-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba T., Ara T., Hasegawa M., Takai Y., Okumura Y., Baba M., Datsenko K.A., Tomita M., Wanner B.L., Mori H. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2006, 2:2006.0008.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
2
-
-
84863322344
-
Contextualizing context for synthetic biology-identifying causes of failure of synthetic biological systems
-
Cardinale S., Arkin A.P. Contextualizing context for synthetic biology-identifying causes of failure of synthetic biological systems. Biotechnol. J. 2012, 7:856-866.
-
(2012)
Biotechnol. J.
, vol.7
, pp. 856-866
-
-
Cardinale, S.1
Arkin, A.P.2
-
3
-
-
79959936732
-
Empirical model and invivo characterization of the bacterial response to synthetic gene expression show that ribosome allocation limits growth rate
-
Carrera J., Rodrigo G., Singh V., Kirov B., Jaramillo A. Empirical model and invivo characterization of the bacterial response to synthetic gene expression show that ribosome allocation limits growth rate. Biotechnol. J. 2011, 6:773-783.
-
(2011)
Biotechnol. J.
, vol.6
, pp. 773-783
-
-
Carrera, J.1
Rodrigo, G.2
Singh, V.3
Kirov, B.4
Jaramillo, A.5
-
4
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong L., Ran F.A., Cox D., Lin S., Barretto R., Habib N., Hsu P.D., Wu X., Jiang W., Marraffini L.A., Zhang F. Multiplex genome engineering using CRISPR/Cas systems. Science 2013, 339:819-823.
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
Habib, N.6
Hsu, P.D.7
Wu, X.8
Jiang, W.9
Marraffini, L.A.10
Zhang, F.11
-
5
-
-
84868625270
-
Queueing up for enzymatic processing: correlated signaling through coupled degradation
-
Cookson N.A., Mather W.H., Danino T., Mondragón-Palomino O., Williams R.J., Tsimring L.S., Hasty J. Queueing up for enzymatic processing: correlated signaling through coupled degradation. Mol. Syst. Biol. 2011, 7:561.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 561
-
-
Cookson, N.A.1
Mather, W.H.2
Danino, T.3
Mondragón-Palomino, O.4
Williams, R.J.5
Tsimring, L.S.6
Hasty, J.7
-
6
-
-
77954688643
-
A synthetic three-color scaffold for monitoring genetic regulation and noise
-
Cox R.S., Dunlop M.J., Elowitz M.B. A synthetic three-color scaffold for monitoring genetic regulation and noise. J.Biol. Eng. 2010, 4:10.
-
(2010)
J.Biol. Eng.
, vol.4
, pp. 10
-
-
Cox, R.S.1
Dunlop, M.J.2
Elowitz, M.B.3
-
7
-
-
81755163097
-
Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions
-
Deutschbauer A., Price M.N., Wetmore K.M., Shao W., Baumohl J.K., Xu Z., Nguyen M., Tamse R., Davis R.W., Arkin A.P. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. PLoS Genet. 2011, 7:e1002385.
-
(2011)
PLoS Genet.
, vol.7
-
-
Deutschbauer, A.1
Price, M.N.2
Wetmore, K.M.3
Shao, W.4
Baumohl, J.K.5
Xu, Z.6
Nguyen, M.7
Tamse, R.8
Davis, R.W.9
Arkin, A.P.10
-
9
-
-
84864507798
-
Large mutational target size for rapid emergence of bacterial persistence
-
Girgis H.S., Harris K., Tavazoie S. Large mutational target size for rapid emergence of bacterial persistence. Proc. Natl. Acad. Sci. USA 2012, 109:12740-12745.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 12740-12745
-
-
Girgis, H.S.1
Harris, K.2
Tavazoie, S.3
-
10
-
-
31544438578
-
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
-
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., et al. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2006, 2:2006.0007.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Hayashi, K.1
Morooka, N.2
Yamamoto, Y.3
Fujita, K.4
Isono, K.5
Choi, S.6
Ohtsubo, E.7
Baba, T.8
Wanner, B.L.9
Mori, H.10
-
11
-
-
33845269743
-
Metabolic analysis of adaptive evolution for insilico-designed lactate-producing strains
-
Hua Q., Joyce A.R., Fong S.S., Palsson B.O. Metabolic analysis of adaptive evolution for insilico-designed lactate-producing strains. Biotechnol. Bioeng. 2006, 95:992-1002.
-
(2006)
Biotechnol. Bioeng.
, vol.95
, pp. 992-1002
-
-
Hua, Q.1
Joyce, A.R.2
Fong, S.S.3
Palsson, B.O.4
-
12
-
-
33745013345
-
A genome-based approach to create a minimally mutated Corynebacterium glutamicum strain for efficient L-lysine production
-
Ikeda M., Ohnishi J., Hayashi M., Mitsuhashi S. A genome-based approach to create a minimally mutated Corynebacterium glutamicum strain for efficient L-lysine production. J.Ind. Microbiol. Biotechnol. 2006, 33:610-615.
-
(2006)
J.Ind. Microbiol. Biotechnol.
, vol.33
, pp. 610-615
-
-
Ikeda, M.1
Ohnishi, J.2
Hayashi, M.3
Mitsuhashi, S.4
-
13
-
-
70350686881
-
Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)
-
Jeong H., Barbe V., Lee C.H., Vallenet D., Yu D.S., Choi S.H., Couloux A., Lee S.W., Yoon S.H., Cattolico L., et al. Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). J.Mol. Biol. 2009, 394:644-652.
-
(2009)
J.Mol. Biol.
, vol.394
, pp. 644-652
-
-
Jeong, H.1
Barbe, V.2
Lee, C.H.3
Vallenet, D.4
Yu, D.S.5
Choi, S.H.6
Couloux, A.7
Lee, S.W.8
Yoon, S.H.9
Cattolico, L.10
-
14
-
-
72249097352
-
Growth rate-dependent global effects on gene expression in bacteria
-
Klumpp S., Zhang Z., Hwa T. Growth rate-dependent global effects on gene expression in bacteria. Cell 2009, 139:1366-1375.
-
(2009)
Cell
, vol.139
, pp. 1366-1375
-
-
Klumpp, S.1
Zhang, Z.2
Hwa, T.3
-
16
-
-
33646822101
-
Global transcriptional analysis of metabolic burden due to plasmid maintenance in Escherichia coli DH5 alpha during batch fermentation
-
Ow D.S.W., Nissom P.M., Philp R., Oh S.K.W., Yap M.G.S. Global transcriptional analysis of metabolic burden due to plasmid maintenance in Escherichia coli DH5 alpha during batch fermentation. Enzyme Microb. Technol. 2006, 39:391-398.
-
(2006)
Enzyme Microb. Technol.
, vol.39
, pp. 391-398
-
-
Ow, D.S.W.1
Nissom, P.M.2
Philp, R.3
Oh, S.K.W.4
Yap, M.G.S.5
-
17
-
-
84876566095
-
Indirect and suboptimal control of gene expression is widespread in bacteria
-
Price M.N., Deutschbauer A.M., Skerker J.M., Wetmore K.M., Ruths T., Mar J.S., Kuehl J.V., Shao W., Arkin A.P. Indirect and suboptimal control of gene expression is widespread in bacteria. Mol. Syst. Biol. 2013, 9:660.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 660
-
-
Price, M.N.1
Deutschbauer, A.M.2
Skerker, J.M.3
Wetmore, K.M.4
Ruths, T.5
Mar, J.S.6
Kuehl, J.V.7
Shao, W.8
Arkin, A.P.9
-
18
-
-
66249088017
-
The second wave of synthetic biology: from modules to systems
-
Purnick P.E., Weiss R. The second wave of synthetic biology: from modules to systems. Nat. Rev. Mol. Cell Biol. 2009, 10:410-422.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 410-422
-
-
Purnick, P.E.1
Weiss, R.2
-
19
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi L.S., Larson M.H., Gilbert L.A., Doudna J.A., Weissman J.S., Arkin A.P., Lim W.A. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 2013, 152:1173-1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
20
-
-
78449268845
-
Interdependence of cell growth and gene expression: origins and consequences
-
Scott M., Gunderson C.W., Mateescu E.M., Zhang Z., Hwa T. Interdependence of cell growth and gene expression: origins and consequences. Science 2010, 330:1099-1102.
-
(2010)
Science
, vol.330
, pp. 1099-1102
-
-
Scott, M.1
Gunderson, C.W.2
Mateescu, E.M.3
Zhang, Z.4
Hwa, T.5
-
21
-
-
16544366784
-
Metabolic flux analysis based on 13C-labeling experiments and integration of the information with gene and protein expression patterns
-
Shimizu K. Metabolic flux analysis based on 13C-labeling experiments and integration of the information with gene and protein expression patterns. Adv. Biochem. Eng. Biotechnol. 2004, 91:1-49.
-
(2004)
Adv. Biochem. Eng. Biotechnol.
, vol.91
, pp. 1-49
-
-
Shimizu, K.1
-
22
-
-
0033956060
-
The COG database: a tool for genome-scale analysis of protein functions and evolution
-
Tatusov R.L., Galperin M.Y., Natale D.A., Koonin E.V. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 2000, 28:33-36.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
23
-
-
34447342528
-
Evolved orthogonal ribosomes enhance the efficiency of synthetic genetic code expansion
-
Wang K., Neumann H., Peak-Chew S.Y., Chin J.W. Evolved orthogonal ribosomes enhance the efficiency of synthetic genetic code expansion. Nat. Biotechnol. 2007, 25:770-777.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 770-777
-
-
Wang, K.1
Neumann, H.2
Peak-Chew, S.Y.3
Chin, J.W.4
-
24
-
-
80055035853
-
Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology
-
Wang B., Kitney R.I., Joly N., Buck M. Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology. Nat. Commun. 2011, 2:508.
-
(2011)
Nat. Commun.
, vol.2
, pp. 508
-
-
Wang, B.1
Kitney, R.I.2
Joly, N.3
Buck, M.4
-
25
-
-
77955459156
-
Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides
-
Warner J.R., Reeder P.J., Karimpour-Fard A., Woodruff L.B., Gill R.T. Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides. Nat. Biotechnol. 2010, 28:856-862.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 856-862
-
-
Warner, J.R.1
Reeder, P.J.2
Karimpour-Fard, A.3
Woodruff, L.B.4
Gill, R.T.5
-
26
-
-
84861398402
-
Comparative multi-omics systems analysis of Escherichia coli strains B and K-12
-
Yoon S.H., Han M.J., Jeong H., Lee C.H., Xia X.X., Lee D.H., Shim J.H., Lee S.Y., Oh T.K., Kim J.F. Comparative multi-omics systems analysis of Escherichia coli strains B and K-12. Genome Biol. 2012, 13:R37.
-
(2012)
Genome Biol.
, vol.13
-
-
Yoon, S.H.1
Han, M.J.2
Jeong, H.3
Lee, C.H.4
Xia, X.X.5
Lee, D.H.6
Shim, J.H.7
Lee, S.Y.8
Oh, T.K.9
Kim, J.F.10
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