-
1
-
-
34548697503
-
Deletion of ultraconserved elements yields viable mice
-
Ahituv N., Zhu Y., Visel A., Holt A., Afzal V., Pennacchio L.A., Rubin E.M. Deletion of ultraconserved elements yields viable mice. PLoS Biol. 2007, 5:e234.
-
(2007)
PLoS Biol.
, vol.5
, pp. e234
-
-
Ahituv, N.1
Zhu, Y.2
Visel, A.3
Holt, A.4
Afzal, V.5
Pennacchio, L.A.6
Rubin, E.M.7
-
2
-
-
0032830639
-
Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2
-
Amir R.E., Van den Veyver I.B., Wan M., Tran C.Q., Francke U., Zoghbi H.Y. Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2. Nat. Genet. 1999, 23:185-188.
-
(1999)
Nat. Genet.
, vol.23
, pp. 185-188
-
-
Amir, R.E.1
Van den Veyver, I.B.2
Wan, M.3
Tran, C.Q.4
Francke, U.5
Zoghbi, H.Y.6
-
3
-
-
0030698872
-
Interneuron migration from basal forebrain to neocortex: dependence on Dlx genes
-
Anderson S.A., Eisenstat D.D., Shi L., Rubenstein J.L. Interneuron migration from basal forebrain to neocortex: dependence on Dlx genes. Science 1997, 278:474-476.
-
(1997)
Science
, vol.278
, pp. 474-476
-
-
Anderson, S.A.1
Eisenstat, D.D.2
Shi, L.3
Rubenstein, J.L.4
-
4
-
-
0030841362
-
Mutations of the homeobox genes Dlx-1 and Dlx-2 disrupt the striatal subventricular zone and differentiation of late born striatal neurons
-
Anderson S.A., Qiu M., Bulfone A., Eisenstat D.D., Meneses J., Pedersen R., Rubenstein J.L. Mutations of the homeobox genes Dlx-1 and Dlx-2 disrupt the striatal subventricular zone and differentiation of late born striatal neurons. Neuron 1997, 19:27-37.
-
(1997)
Neuron
, vol.19
, pp. 27-37
-
-
Anderson, S.A.1
Qiu, M.2
Bulfone, A.3
Eisenstat, D.D.4
Meneses, J.5
Pedersen, R.6
Rubenstein, J.L.7
-
5
-
-
84897459814
-
An atlas of active enhancers across human cell types and tissues
-
FANTOM Consortium
-
Andersson R., Gebhard C., Miguel-Escalada I., Hoof I., Bornholdt J., Boyd M., Chen Y., Zhao X., Schmidl C., Suzuki T., et al. An atlas of active enhancers across human cell types and tissues. Nature 2014, 507:455-461. FANTOM Consortium.
-
(2014)
Nature
, vol.507
, pp. 455-461
-
-
Andersson, R.1
Gebhard, C.2
Miguel-Escalada, I.3
Hoof, I.4
Bornholdt, J.5
Boyd, M.6
Chen, Y.7
Zhao, X.8
Schmidl, C.9
Suzuki, T.10
-
6
-
-
84871117732
-
Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression
-
713-531
-
Ariza-Cosano A., Visel A., Pennacchio L.A., Fraser H.B., Gómez-Skarmeta J.L., Irimia M., Bessa J. Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression. BMC Genomics 2012, 13. 713-531.
-
(2012)
BMC Genomics
, vol.13
-
-
Ariza-Cosano, A.1
Visel, A.2
Pennacchio, L.A.3
Fraser, H.B.4
Gómez-Skarmeta, J.L.5
Irimia, M.6
Bessa, J.7
-
7
-
-
84874381107
-
Genome-wide quantitative enhancer activity maps identified by STARR-seq
-
Arnold C.D., Gerlach D., Stelzer C., Boryń Ł.M., Rath M., Stark A. Genome-wide quantitative enhancer activity maps identified by STARR-seq. Science 2013, 339:1074-1077.
-
(2013)
Science
, vol.339
, pp. 1074-1077
-
-
Arnold, C.D.1
Gerlach, D.2
Stelzer, C.3
BoryńŁ, M.4
Rath, M.5
Stark, A.6
-
8
-
-
84886257610
-
Fine tuning of craniofacial morphology by distant-acting enhancers
-
1241006-1241006
-
Attanasio C., Nord A.S., Zhu Y., Blow M.J., Li Z., Liberton D.K., Morrison H., Plajzer-Frick I., Holt A., Hosseini R., et al. Fine tuning of craniofacial morphology by distant-acting enhancers. Science 2013, 342. 1241006-1241006.
-
(2013)
Science
, vol.342
-
-
Attanasio, C.1
Nord, A.S.2
Zhu, Y.3
Blow, M.J.4
Li, Z.5
Liberton, D.K.6
Morrison, H.7
Plajzer-Frick, I.8
Holt, A.9
Hosseini, R.10
-
9
-
-
70349483913
-
SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development
-
Azim E., Jabaudon D., Fame R.M., Macklis J.D. SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development. Nat. Neurosci. 2009, 12:1238-1247.
-
(2009)
Nat. Neurosci.
, vol.12
, pp. 1238-1247
-
-
Azim, E.1
Jabaudon, D.2
Fame, R.M.3
Macklis, J.D.4
-
10
-
-
84893973335
-
Evolutionarily dynamic alternative splicing of GPR56 regulates regional cerebral cortical patterning
-
Bae B.-I., Tietjen I., Atabay K.D., Evrony G.D., Johnson M.B., Asare E., Wang P.P., Murayama A.Y., Im K., Lisgo S.N., et al. Evolutionarily dynamic alternative splicing of GPR56 regulates regional cerebral cortical patterning. Science 2014, 343:764-768.
-
(2014)
Science
, vol.343
, pp. 764-768
-
-
Bae, B.-I.1
Tietjen, I.2
Atabay, K.D.3
Evrony, G.D.4
Johnson, M.B.5
Asare, E.6
Wang, P.P.7
Murayama, A.Y.8
Im, K.9
Lisgo, S.N.10
-
11
-
-
19344378337
-
REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis
-
Ballas N., Grunseich C., Lu D.D., Speh J.C., Mandel G. REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis. Cell 2005, 121:645-657.
-
(2005)
Cell
, vol.121
, pp. 645-657
-
-
Ballas, N.1
Grunseich, C.2
Lu, D.D.3
Speh, J.C.4
Mandel, G.5
-
13
-
-
68949157053
-
The cell-intrinsic requirement of Sox6 for cortical interneuron development
-
Batista-Brito R., Rossignol E., Hjerling-Leffler J., Denaxa M., Wegner M., Lefebvre V., Pachnis V., Fishell G. The cell-intrinsic requirement of Sox6 for cortical interneuron development. Neuron 2009, 63:466-481.
-
(2009)
Neuron
, vol.63
, pp. 466-481
-
-
Batista-Brito, R.1
Rossignol, E.2
Hjerling-Leffler, J.3
Denaxa, M.4
Wegner, M.5
Lefebvre, V.6
Pachnis, V.7
Fishell, G.8
-
14
-
-
84868342049
-
Invivo genome editing using a high-efficiency TALEN system
-
Bedell V.M., Wang Y., Campbell J.M., Poshusta T.L., Starker C.G., Krug R.G., Tan W., Penheiter S.G., Ma A.C., Leung A.Y.H., et al. Invivo genome editing using a high-efficiency TALEN system. Nature 2012, 491:114-118.
-
(2012)
Nature
, vol.491
, pp. 114-118
-
-
Bedell, V.M.1
Wang, Y.2
Campbell, J.M.3
Poshusta, T.L.4
Starker, C.G.5
Krug, R.G.6
Tan, W.7
Penheiter, S.G.8
Ma, A.C.9
Leung, A.Y.H.10
-
15
-
-
84890314164
-
Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia
-
Bhatia S., Bengani H., Fish M., Brown A., Divizia M.T., de Marco R., Damante G., Grainger R., van Heyningen V., Kleinjan D.A. Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia. Am. J. Hum. Genet. 2013, 93:1126-1134.
-
(2013)
Am. J. Hum. Genet.
, vol.93
, pp. 1126-1134
-
-
Bhatia, S.1
Bengani, H.2
Fish, M.3
Brown, A.4
Divizia, M.T.5
de Marco, R.6
Damante, G.7
Grainger, R.8
van Heyningen, V.9
Kleinjan, D.A.10
-
16
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
ENCODE Project Consortium, NISC Comparative Sequencing ProgramNISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing CenterBaylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing CenterWashington University Genome Sequencing Center, Broad InstituteBroad Institute, Children's Hospital Oakland Research InstituteChildren's Hospital Oakland Research Institute
-
Birney E., Stamatoyannopoulos J.A., Dutta A., Guigó R., Gingeras T.R., Margulies E.H., Weng Z., Snyder M., Dermitzakis E.T., Thurman R.E., et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007, 447:799-816. ENCODE Project Consortium, NISC Comparative Sequencing ProgramNISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing CenterBaylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing CenterWashington University Genome Sequencing Center, Broad InstituteBroad Institute, Children's Hospital Oakland Research InstituteChildren's Hospital Oakland Research Institute.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigó, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
-
17
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
Blow M.J., McCulley D.J., Li Z., Zhang T., Akiyama J.A., Holt A., Plajzer-Frick I., Shoukry M., Wright C., Chen F., et al. ChIP-Seq identification of weakly conserved heart enhancers. Nat. Genet. 2010, 42:806-810.
-
(2010)
Nat. Genet.
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
McCulley, D.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
18
-
-
84867158452
-
Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
-
Bogdanović O., Fernandez-Miñán A., Tena J.J., de la Calle-Mustienes E., Hidalgo C., van Kruysbergen I., van Heeringen S.J., Veenstra G.J., Gómez-Skarmeta J.L. Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis. Genome Res. 2012, 22:2043-2053.
-
(2012)
Genome Res.
, vol.22
, pp. 2043-2053
-
-
Bogdanović, O.1
Fernandez-Miñán, A.2
Tena, J.J.3
de la Calle-Mustienes, E.4
Hidalgo, C.5
van Kruysbergen, I.6
van Heeringen, S.J.7
Veenstra, G.J.8
Gómez-Skarmeta, J.L.9
-
19
-
-
50849093561
-
The requirement of Nkx2-1 in the temporal specification of cortical interneuron subtypes
-
Butt S.J.B., Sousa V.H., Fuccillo M.V., Hjerling-Leffler J., Miyoshi G., Kimura S., Fishell G. The requirement of Nkx2-1 in the temporal specification of cortical interneuron subtypes. Neuron 2008, 59:722-732.
-
(2008)
Neuron
, vol.59
, pp. 722-732
-
-
Butt, S.J.B.1
Sousa, V.H.2
Fuccillo, M.V.3
Hjerling-Leffler, J.4
Miyoshi, G.5
Kimura, S.6
Fishell, G.7
-
21
-
-
78751575464
-
Development: hourglass theory gets molecular approval
-
76-76
-
Casci T. Development: hourglass theory gets molecular approval. Nat. Rev. Genet. 2011, 12. 76-76.
-
(2011)
Nat. Rev. Genet.
, vol.12
-
-
Casci, T.1
-
22
-
-
79955676827
-
A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets
-
Castro D.S., Martynoga B., Parras C., Ramesh V., Pacary E., Johnston C., Drechsel D., Lebel-Potter M., Garcia L.G., Hunt C., et al. A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets. Genes Dev. 2011, 25:930-945.
-
(2011)
Genes Dev.
, vol.25
, pp. 930-945
-
-
Castro, D.S.1
Martynoga, B.2
Parras, C.3
Ramesh, V.4
Pacary, E.5
Johnston, C.6
Drechsel, D.7
Lebel-Potter, M.8
Garcia, L.G.9
Hunt, C.10
-
23
-
-
84891953718
-
Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma
-
Chapuy B., McKeown M.R., Lin C.Y., Monti S., Roemer M.G.M., Qi J., Rahl P.B., Sun H.H., Yeda K.T., Doench J.G., et al. Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma. Cancer Cell 2013, 24:777-790.
-
(2013)
Cancer Cell
, vol.24
, pp. 777-790
-
-
Chapuy, B.1
McKeown, M.R.2
Lin, C.Y.3
Monti, S.4
Roemer, M.G.M.5
Qi, J.6
Rahl, P.B.7
Sun, H.H.8
Yeda, K.T.9
Doench, J.G.10
-
24
-
-
84877078937
-
Use of "MGE enhancers" for labeling and selection of embryonic stem cell-derived medial ganglionic eminence (MGE) progenitors and neurons
-
Chen Y.-J.J., Vogt D., Wang Y., Visel A., Silberberg S.N., Nicholas C.R., Danjo T., Pollack J.L., Pennacchio L.A., Anderson S., et al. Use of "MGE enhancers" for labeling and selection of embryonic stem cell-derived medial ganglionic eminence (MGE) progenitors and neurons. PLoS ONE 2013, 8:e61956.
-
(2013)
PLoS ONE
, vol.8
, pp. e61956
-
-
Chen, Y.-J.J.1
Vogt, D.2
Wang, Y.3
Visel, A.4
Silberberg, S.N.5
Nicholas, C.R.6
Danjo, T.7
Pollack, J.L.8
Pennacchio, L.A.9
Anderson, S.10
-
25
-
-
78951479577
-
Targeting DNA double-strand breaks with TAL effector nucleases
-
Christian M., Cermak T., Doyle E.L., Schmidt C., Zhang F., Hummel A., Bogdanove A.J., Voytas D.F. Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 2010, 186:757-761.
-
(2010)
Genetics
, vol.186
, pp. 757-761
-
-
Christian, M.1
Cermak, T.2
Doyle, E.L.3
Schmidt, C.4
Zhang, F.5
Hummel, A.6
Bogdanove, A.J.7
Voytas, D.F.8
-
26
-
-
34948867658
-
Extrapolating brain development from experimental species to humans
-
Clancy B., Finlay B.L., Darlington R.B., Anand K.J.S. Extrapolating brain development from experimental species to humans. Neurotoxicology 2007, 28:931-937.
-
(2007)
Neurotoxicology
, vol.28
, pp. 931-937
-
-
Clancy, B.1
Finlay, B.L.2
Darlington, R.B.3
Anand, K.J.S.4
-
27
-
-
84870499783
-
Satb1 is an activity-modulated transcription factor required for the terminal differentiation and connectivity of medial ganglionic eminence-derived cortical interneurons
-
Close J., Xu H., De Marco García N., Batista-Brito R., Rossignol E., Rudy B., Fishell G. Satb1 is an activity-modulated transcription factor required for the terminal differentiation and connectivity of medial ganglionic eminence-derived cortical interneurons. J.Neurosci. 2012, 32:17690-17705.
-
(2012)
J.Neurosci.
, vol.32
, pp. 17690-17705
-
-
Close, J.1
Xu, H.2
De Marco García, N.3
Batista-Brito, R.4
Rossignol, E.5
Rudy, B.6
Fishell, G.7
-
28
-
-
23044437148
-
Mice lacking Dlx1 show subtype-specific loss of interneurons, reduced inhibition and epilepsy
-
Cobos I., Calcagnotto M.E., Vilaythong A.J., Thwin M.T., Noebels J.L., Baraban S.C., Rubenstein J.L.R. Mice lacking Dlx1 show subtype-specific loss of interneurons, reduced inhibition and epilepsy. Nat. Neurosci. 2005, 8:1059-1068.
-
(2005)
Nat. Neurosci.
, vol.8
, pp. 1059-1068
-
-
Cobos, I.1
Calcagnotto, M.E.2
Vilaythong, A.J.3
Thwin, M.T.4
Noebels, J.L.5
Baraban, S.C.6
Rubenstein, J.L.R.7
-
29
-
-
34250188057
-
Dlx transcription factors promote migration through repression of axon and dendrite growth
-
Cobos I., Borello U., Rubenstein J.L.R. Dlx transcription factors promote migration through repression of axon and dendrite growth. Neuron 2007, 54:873-888.
-
(2007)
Neuron
, vol.54
, pp. 873-888
-
-
Cobos, I.1
Borello, U.2
Rubenstein, J.L.R.3
-
30
-
-
54849441959
-
Arx is a direct target of Dlx2 and thereby contributes to the tangential migration of GABAergic interneurons
-
Colasante G., Collombat P., Raimondi V., Bonanomi D., Ferrai C., Maira M., Yoshikawa K., Mansouri A., Valtorta F., Rubenstein J.L.R., Broccoli V. Arx is a direct target of Dlx2 and thereby contributes to the tangential migration of GABAergic interneurons. J.Neurosci. 2008, 28:10674-10686.
-
(2008)
J.Neurosci.
, vol.28
, pp. 10674-10686
-
-
Colasante, G.1
Collombat, P.2
Raimondi, V.3
Bonanomi, D.4
Ferrai, C.5
Maira, M.6
Yoshikawa, K.7
Mansouri, A.8
Valtorta, F.9
Rubenstein, J.L.R.10
Broccoli, V.11
-
31
-
-
34247474911
-
Inactivation of Arx, the murine ortholog of the X-linked lissencephaly with ambiguous genitalia gene, leads to severe disorganization of the ventral telencephalon with impaired neuronal migration and differentiation
-
Colombo E., Collombat P., Colasante G., Bianchi M., Long J., Mansouri A., Rubenstein J.L.R., Broccoli V. Inactivation of Arx, the murine ortholog of the X-linked lissencephaly with ambiguous genitalia gene, leads to severe disorganization of the ventral telencephalon with impaired neuronal migration and differentiation. J.Neurosci. 2007, 27:4786-4798.
-
(2007)
J.Neurosci.
, vol.27
, pp. 4786-4798
-
-
Colombo, E.1
Collombat, P.2
Colasante, G.3
Bianchi, M.4
Long, J.5
Mansouri, A.6
Rubenstein, J.L.R.7
Broccoli, V.8
-
32
-
-
22244452677
-
Distribution and intensity of constraint in mammalian genomic sequence
-
NISC Comparative Sequencing Program
-
Cooper G.M., Stone E.A., Asimenos G., Green E.D., Batzoglou S., Sidow A. Distribution and intensity of constraint in mammalian genomic sequence. Genome Res. 2005, 15:901-913. NISC Comparative Sequencing Program.
-
(2005)
Genome Res.
, vol.15
, pp. 901-913
-
-
Cooper, G.M.1
Stone, E.A.2
Asimenos, G.3
Green, E.D.4
Batzoglou, S.5
Sidow, A.6
-
33
-
-
84861911346
-
Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb
-
Cotney J., Leng J., Oh S., DeMare L.E., Reilly S.K., Gerstein M.B., Noonan J.P. Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb. Genome Res. 2012, 22:1069-1080.
-
(2012)
Genome Res.
, vol.22
, pp. 1069-1080
-
-
Cotney, J.1
Leng, J.2
Oh, S.3
DeMare, L.E.4
Reilly, S.K.5
Gerstein, M.B.6
Noonan, J.P.7
-
34
-
-
84879911829
-
The evolution of lineage-specific regulatory activities in the human embryonic limb
-
Cotney J., Leng J., Yin J., Reilly S.K., DeMare L.E., Emera D., Ayoub A.E., Rakic P., Noonan J.P. The evolution of lineage-specific regulatory activities in the human embryonic limb. Cell 2013, 154:185-196.
-
(2013)
Cell
, vol.154
, pp. 185-196
-
-
Cotney, J.1
Leng, J.2
Yin, J.3
Reilly, S.K.4
DeMare, L.E.5
Emera, D.6
Ayoub, A.E.7
Rakic, P.8
Noonan, J.P.9
-
35
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton M.P., Cheng A.W., Welstead G.G., Kooistra T., Carey B.W., Steine E.J., Hanna J., Lodato M.A., Frampton G.M., Sharp P.A., et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 2010, 107:21931-21936.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
36
-
-
60149095014
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
-
Cuddapah S., Jothi R., Schones D.E., Roh T.-Y., Cui K., Zhao K. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res. 2009, 19:24-32.
-
(2009)
Genome Res.
, vol.19
, pp. 24-32
-
-
Cuddapah, S.1
Jothi, R.2
Schones, D.E.3
Roh, T.-Y.4
Cui, K.5
Zhao, K.6
-
37
-
-
84897394513
-
The functional consequences of variation in transcription factor binding
-
Cusanovich D.A., Pavlovic B., Pritchard J.K., Gilad Y. The functional consequences of variation in transcription factor binding. PLoS Genet. 2014, 10:e1004226.
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004226
-
-
Cusanovich, D.A.1
Pavlovic, B.2
Pritchard, J.K.3
Gilad, Y.4
-
38
-
-
84881119091
-
The genomic landscape of cohesin-associated chromatin interactions
-
DeMare L.E., Leng J., Cotney J., Reilly S.K., Yin J., Sarro R., Noonan J.P. The genomic landscape of cohesin-associated chromatin interactions. Genome Res. 2013, 23:1224-1234.
-
(2013)
Genome Res.
, vol.23
, pp. 1224-1234
-
-
DeMare, L.E.1
Leng, J.2
Cotney, J.3
Reilly, S.K.4
Yin, J.5
Sarro, R.6
Noonan, J.P.7
-
39
-
-
84870474577
-
Maturation-promoting activity of SATB1 in MGE-derived cortical interneurons
-
Denaxa M., Kalaitzidou M., Garefalaki A., Achimastou A., Lasrado R., Maes T., Pachnis V. Maturation-promoting activity of SATB1 in MGE-derived cortical interneurons. Cell Reports 2012, 2:1351-1362.
-
(2012)
Cell Reports
, vol.2
, pp. 1351-1362
-
-
Denaxa, M.1
Kalaitzidou, M.2
Garefalaki, A.3
Achimastou, A.4
Lasrado, R.5
Maes, T.6
Pachnis, V.7
-
40
-
-
84899692444
-
Function-based identification of mammalian enhancers using site-specific integration
-
Dickel D.E., Zhu Y., Nord A.S., Wylie J.N., Akiyama J.A., Afzal V., Plajzer-Frick I., Kirkpatrick A., Göttgens B., Bruneau B.G., et al. Function-based identification of mammalian enhancers using site-specific integration. Nat. Methods 2014, 11:566-571.
-
(2014)
Nat. Methods
, vol.11
, pp. 566-571
-
-
Dickel, D.E.1
Zhu, Y.2
Nord, A.S.3
Wylie, J.N.4
Akiyama, J.A.5
Afzal, V.6
Plajzer-Frick, I.7
Kirkpatrick, A.8
Göttgens, B.9
Bruneau, B.G.10
-
41
-
-
78650141540
-
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
-
Domazet-Lošo T., Tautz D. A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. Nature 2010, 468:815-818.
-
(2010)
Nature
, vol.468
, pp. 815-818
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
42
-
-
44449127533
-
NKX2.1 specifies cortical interneuron fate by activating Lhx6
-
Du T., Xu Q., Ocbina P.J., Anderson S.A. NKX2.1 specifies cortical interneuron fate by activating Lhx6. Development 2008, 135:1559-1567.
-
(2008)
Development
, vol.135
, pp. 1559-1567
-
-
Du, T.1
Xu, Q.2
Ocbina, P.J.3
Anderson, S.A.4
-
43
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489:57-74. ENCODE Project Consortium.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
44
-
-
77649123157
-
The progenitor zone of the ventral medial ganglionic eminence requires Nkx2-1 to generate most of the globus pallidus but few neocortical interneurons
-
Flandin P., Kimura S., Rubenstein J.L.R. The progenitor zone of the ventral medial ganglionic eminence requires Nkx2-1 to generate most of the globus pallidus but few neocortical interneurons. J.Neurosci. 2010, 30:2812-2823.
-
(2010)
J.Neurosci.
, vol.30
, pp. 2812-2823
-
-
Flandin, P.1
Kimura, S.2
Rubenstein, J.L.R.3
-
45
-
-
21444432191
-
Loss of forebrain cholinergic neurons and impairment in spatial learning and memory in LHX7-deficient mice
-
Fragkouli A., Hearn C., Errington M., Cooke S., Grigoriou M., Bliss T., Stylianopoulou F., Pachnis V. Loss of forebrain cholinergic neurons and impairment in spatial learning and memory in LHX7-deficient mice. Eur. J. Neurosci. 2005, 21:2923-2938.
-
(2005)
Eur. J. Neurosci.
, vol.21
, pp. 2923-2938
-
-
Fragkouli, A.1
Hearn, C.2
Errington, M.3
Cooke, S.4
Grigoriou, M.5
Bliss, T.6
Stylianopoulou, F.7
Pachnis, V.8
-
46
-
-
70450195439
-
LIM homeodomain transcription factor-dependent specification of bipotential MGE progenitors into cholinergic and GABAergic striatal interneurons
-
Fragkouli A., van Wijk N.V., Lopes R., Kessaris N., Pachnis V. LIM homeodomain transcription factor-dependent specification of bipotential MGE progenitors into cholinergic and GABAergic striatal interneurons. Development 2009, 136:3841-3851.
-
(2009)
Development
, vol.136
, pp. 3841-3851
-
-
Fragkouli, A.1
van Wijk, N.V.2
Lopes, R.3
Kessaris, N.4
Pachnis, V.5
-
47
-
-
3242891068
-
VISTA: computational tools for comparative genomics
-
W273-9
-
Frazer K.A., Pachter L., Poliakov A., Rubin E.M., Dubchak I. VISTA: computational tools for comparative genomics. Nucleic Acids Res. 2004, 32. W273-9.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Frazer, K.A.1
Pachter, L.2
Poliakov, A.3
Rubin, E.M.4
Dubchak, I.5
-
48
-
-
77953376969
-
Mutations in ARX Result in Several Defects Involving GABAergic Neurons
-
Friocourt G., Parnavelas J.G. Mutations in ARX Result in Several Defects Involving GABAergic Neurons. Front. Cell. Neurosci. 2010, 4:4.
-
(2010)
Front. Cell. Neurosci.
, vol.4
, pp. 4
-
-
Friocourt, G.1
Parnavelas, J.G.2
-
49
-
-
66149167455
-
ChIP-based methods for the identification of long-range chromatin interactions
-
Fullwood M.J., Ruan Y. ChIP-based methods for the identification of long-range chromatin interactions. J.Cell. Biochem. 2009, 107:30-39.
-
(2009)
J.Cell. Biochem.
, vol.107
, pp. 30-39
-
-
Fullwood, M.J.1
Ruan, Y.2
-
50
-
-
70449103609
-
An oestrogen-receptor-alpha-bound human chromatin interactome
-
Fullwood M.J., Liu M.H., Pan Y.F., Liu J., Xu H., Mohamed Y.B., Orlov Y.L., Velkov S., Ho A., Mei P.H., et al. An oestrogen-receptor-alpha-bound human chromatin interactome. Nature 2009, 462:58-64.
-
(2009)
Nature
, vol.462
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
Orlov, Y.L.7
Velkov, S.8
Ho, A.9
Mei, P.H.10
-
51
-
-
34248326896
-
Distinct cis-regulatory elements from the Dlx1/Dlx2 locus mark different progenitor cell populations in the ganglionic eminences and different subtypes of adult cortical interneurons
-
Ghanem N., Yu M., Long J., Hatch G., Rubenstein J.L.R., Ekker M. Distinct cis-regulatory elements from the Dlx1/Dlx2 locus mark different progenitor cell populations in the ganglionic eminences and different subtypes of adult cortical interneurons. J.Neurosci. 2007, 27:5012-5022.
-
(2007)
J.Neurosci.
, vol.27
, pp. 5012-5022
-
-
Ghanem, N.1
Yu, M.2
Long, J.3
Hatch, G.4
Rubenstein, J.L.R.5
Ekker, M.6
-
52
-
-
0242401835
-
A gene expression atlas of the central nervous system based on bacterial artificial chromosomes
-
Gong S., Zheng C., Doughty M.L., Losos K., Didkovsky N., Schambra U.B., Nowak N.J., Joyner A., Leblanc G., Hatten M.E., Heintz N. A gene expression atlas of the central nervous system based on bacterial artificial chromosomes. Nature 2003, 425:917-925.
-
(2003)
Nature
, vol.425
, pp. 917-925
-
-
Gong, S.1
Zheng, C.2
Doughty, M.L.3
Losos, K.4
Didkovsky, N.5
Schambra, U.B.6
Nowak, N.J.7
Joyner, A.8
Leblanc, G.9
Hatten, M.E.10
Heintz, N.11
-
53
-
-
77952136530
-
A draft sequence of the Neandertal genome
-
Green R.E., Krause J., Briggs A.W., Maricic T., Stenzel U., Kircher M., Patterson N., Li H., Zhai W., Fritz M.H.-Y., et al. A draft sequence of the Neandertal genome. Science 2010, 328:710-722.
-
(2010)
Science
, vol.328
, pp. 710-722
-
-
Green, R.E.1
Krause, J.2
Briggs, A.W.3
Maricic, T.4
Stenzel, U.5
Kircher, M.6
Patterson, N.7
Li, H.8
Zhai, W.9
Fritz, M.H.-Y.10
-
54
-
-
84856078399
-
Therapeutic strategies in fragile X syndrome: dysregulated mGluR signaling and beyond
-
Gross C., Berry-Kravis E.M., Bassell G.J. Therapeutic strategies in fragile X syndrome: dysregulated mGluR signaling and beyond. Neuropsychopharmacology 2012, 37:178-195.
-
(2012)
Neuropsychopharmacology
, vol.37
, pp. 178-195
-
-
Gross, C.1
Berry-Kravis, E.M.2
Bassell, G.J.3
-
55
-
-
84881193129
-
Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network
-
Consortium on the Genetics of Schizophrenia (COGS), PAARTNERS Study GroupPAARTNERS Study Group
-
Gulsuner S., Walsh T., Watts A.C., Lee M.K., Thornton A.M., Casadei S., Rippey C., Shahin H., Nimgaonkar V.L., Go R.C., et al. Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network. Cell 2013, 154:518-529. Consortium on the Genetics of Schizophrenia (COGS), PAARTNERS Study GroupPAARTNERS Study Group.
-
(2013)
Cell
, vol.154
, pp. 518-529
-
-
Gulsuner, S.1
Walsh, T.2
Watts, A.C.3
Lee, M.K.4
Thornton, A.M.5
Casadei, S.6
Rippey, C.7
Shahin, H.8
Nimgaonkar, V.L.9
Go, R.C.10
-
56
-
-
49949107386
-
The genetics of early telencephalon patterning: some assembly required
-
Hébert J.M., Fishell G. The genetics of early telencephalon patterning: some assembly required. Nat. Rev. Neurosci. 2008, 9:678-685.
-
(2008)
Nat. Rev. Neurosci.
, vol.9
, pp. 678-685
-
-
Hébert, J.M.1
Fishell, G.2
-
57
-
-
77951632193
-
Heterozygous mutations in SIX3 and SHH are associated with schizencephaly and further expand the clinical spectrum of holoprosencephaly
-
Hehr U., Pineda-Alvarez D.E., Uyanik G., Hu P., Zhou N., Hehr A., Schell-Apacik C., Altus C., Daumer-Haas C., Meiner A., et al. Heterozygous mutations in SIX3 and SHH are associated with schizencephaly and further expand the clinical spectrum of holoprosencephaly. Hum. Genet. 2010, 127:555-561.
-
(2010)
Hum. Genet.
, vol.127
, pp. 555-561
-
-
Hehr, U.1
Pineda-Alvarez, D.E.2
Uyanik, G.3
Hu, P.4
Zhou, N.5
Hehr, A.6
Schell-Apacik, C.7
Altus, C.8
Daumer-Haas, C.9
Meiner, A.10
-
58
-
-
0027347251
-
Gene and enhancer trapping: mutagenic strategies for developmental studies
-
Hill D.P., Wurst W. Gene and enhancer trapping: mutagenic strategies for developmental studies. Curr. Top. Dev. Biol. 1993, 28:181-206.
-
(1993)
Curr. Top. Dev. Biol.
, vol.28
, pp. 181-206
-
-
Hill, D.P.1
Wurst, W.2
-
59
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz D., Abraham B.J., Lee T.I., Lau A., Saint-André V., Sigova A.A., Hoke H.A., Young R.A. Super-enhancers in the control of cell identity and disease. Cell 2013, 155:934-947.
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-André, V.5
Sigova, A.A.6
Hoke, H.A.7
Young, R.A.8
-
60
-
-
84891960434
-
Bidirectional homeostatic plasticity induced by interneuron cell death and transplantation invivo
-
Howard M.A., Rubenstein J.L.R., Baraban S.C. Bidirectional homeostatic plasticity induced by interneuron cell death and transplantation invivo. Proc. Natl. Acad. Sci. USA 2014, 111:492-497.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 492-497
-
-
Howard, M.A.1
Rubenstein, J.L.R.2
Baraban, S.C.3
-
61
-
-
84858960113
-
Combinatorial activation and repression by seven transcription factors specify Drosophila odorant receptor expression
-
Jafari S., Alkhori L., Schleiffer A., Brochtrup A., Hummel T., Alenius M. Combinatorial activation and repression by seven transcription factors specify Drosophila odorant receptor expression. PLoS Biol. 2012, 10:e1001280.
-
(2012)
PLoS Biol.
, vol.10
, pp. e1001280
-
-
Jafari, S.1
Alkhori, L.2
Schleiffer, A.3
Brochtrup, A.4
Hummel, T.5
Alenius, M.6
-
62
-
-
84881664021
-
Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing
-
Jiang Y.-H., Yuen R.K.C., Jin X., Wang M., Chen N., Wu X., Ju J., Mei J., Shi Y., He M., et al. Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing. Am. J. Hum. Genet. 2013, 93:249-263.
-
(2013)
Am. J. Hum. Genet.
, vol.93
, pp. 249-263
-
-
Jiang, Y.-H.1
Yuen, R.K.C.2
Jin, X.3
Wang, M.4
Chen, N.5
Wu, X.6
Ju, J.7
Mei, J.8
Shi, Y.9
He, M.10
-
63
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J.A., Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337:816-821.
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
64
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey M.H., Newman J.J., Bilodeau S., Zhan Y., Orlando D.A., van Berkum N.L., Ebmeier C.C., Goossens J., Rahl P.B., Levine S.S., et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 2010, 467:430-435.
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
-
65
-
-
78650120369
-
Gene expression divergence recapitulates the developmental hourglass model
-
Kalinka A.T., Varga K.M., Gerrard D.T., Preibisch S., Corcoran D.L., Jarrells J., Ohler U., Bergman C.M., Tomancak P. Gene expression divergence recapitulates the developmental hourglass model. Nature 2010, 468:811-814.
-
(2010)
Nature
, vol.468
, pp. 811-814
-
-
Kalinka, A.T.1
Varga, K.M.2
Gerrard, D.T.3
Preibisch, S.4
Corcoran, D.L.5
Jarrells, J.6
Ohler, U.7
Bergman, C.M.8
Tomancak, P.9
-
66
-
-
0032895297
-
Distinct cis-essential modules direct the time-space pattern of the Pax6 gene activity
-
Kammandel B., Chowdhury K., Stoykova A., Aparicio S., Brenner S., Gruss P. Distinct cis-essential modules direct the time-space pattern of the Pax6 gene activity. Dev. Biol. 1999, 205:79-97.
-
(1999)
Dev. Biol.
, vol.205
, pp. 79-97
-
-
Kammandel, B.1
Chowdhury, K.2
Stoykova, A.3
Aparicio, S.4
Brenner, S.5
Gruss, P.6
-
67
-
-
50149090751
-
Gene targeting in mouse embryos mediated by RecA and modified single-stranded oligonucleotides
-
Kang J.H., Ahn K.S., Heo S.Y., Won J.Y., Shim H. Gene targeting in mouse embryos mediated by RecA and modified single-stranded oligonucleotides. InVitro Cell. Dev. Biol. Anim. 2008, 44:57-62.
-
(2008)
InVitro Cell. Dev. Biol. Anim.
, vol.44
, pp. 57-62
-
-
Kang, J.H.1
Ahn, K.S.2
Heo, S.Y.3
Won, J.Y.4
Shim, H.5
-
68
-
-
80054993342
-
Spatio-temporal transcriptome of the human brain
-
Kang H.J., Kawasawa Y.I., Cheng F., Zhu Y., Xu X., Li M., Sousa A.M.M., Pletikos M., Meyer K.A., Sedmak G., et al. Spatio-temporal transcriptome of the human brain. Nature 2011, 478:483-489.
-
(2011)
Nature
, vol.478
, pp. 483-489
-
-
Kang, H.J.1
Kawasawa, Y.I.2
Cheng, F.3
Zhu, Y.4
Xu, X.5
Li, M.6
Sousa, A.M.M.7
Pletikos, M.8
Meyer, K.A.9
Sedmak, G.10
-
69
-
-
4444287699
-
Regional patterns of gene expression in human and chimpanzee brains
-
Khaitovich P., Muetzel B., She X., Lachmann M., Hellmann I., Dietzsch J., Steigele S., Do H.-H., Weiss G., Enard W., et al. Regional patterns of gene expression in human and chimpanzee brains. Genome Res. 2004, 14:1462-1473.
-
(2004)
Genome Res.
, vol.14
, pp. 1462-1473
-
-
Khaitovich, P.1
Muetzel, B.2
She, X.3
Lachmann, M.4
Hellmann, I.5
Dietzsch, J.6
Steigele, S.7
Do, H.-H.8
Weiss, G.9
Enard, W.10
-
70
-
-
84877147962
-
Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
-
Kheradpour P., Ernst J., Melnikov A., Rogov P., Wang L., Zhang X., Alston J., Mikkelsen T.S., Kellis M. Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay. Genome Res. 2013, 23:800-811.
-
(2013)
Genome Res.
, vol.23
, pp. 800-811
-
-
Kheradpour, P.1
Ernst, J.2
Melnikov, A.3
Rogov, P.4
Wang, L.5
Zhang, X.6
Alston, J.7
Mikkelsen, T.S.8
Kellis, M.9
-
71
-
-
84894589713
-
Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation
-
Kieffer-Kwon K.-R., Tang Z., Mathe E., Qian J., Sung M.-H., Li G., Resch W., Baek S., Pruett N., Grøntved L., et al. Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation. Cell 2013, 155:1507-1520.
-
(2013)
Cell
, vol.155
, pp. 1507-1520
-
-
Kieffer-Kwon, K.-R.1
Tang, Z.2
Mathe, E.3
Qian, J.4
Sung, M.-H.5
Li, G.6
Resch, W.7
Baek, S.8
Pruett, N.9
Grøntved, L.10
-
72
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King M.C., Wilson A.C. Evolution at two levels in humans and chimpanzees. Science 1975, 188:107-116.
-
(1975)
Science
, vol.188
, pp. 107-116
-
-
King, M.C.1
Wilson, A.C.2
-
73
-
-
0036844387
-
Mutation of ARX causes abnormal development of forebrain and testes in mice and X-linked lissencephaly with abnormal genitalia in humans
-
Kitamura K., Yanazawa M., Sugiyama N., Miura H., Iizuka-Kogo A., Kusaka M., Omichi K., Suzuki R., Kato-Fukui Y., Kamiirisa K., et al. Mutation of ARX causes abnormal development of forebrain and testes in mice and X-linked lissencephaly with abnormal genitalia in humans. Nat. Genet. 2002, 32:359-369.
-
(2002)
Nat. Genet.
, vol.32
, pp. 359-369
-
-
Kitamura, K.1
Yanazawa, M.2
Sugiyama, N.3
Miura, H.4
Iizuka-Kogo, A.5
Kusaka, M.6
Omichi, K.7
Suzuki, R.8
Kato-Fukui, Y.9
Kamiirisa, K.10
-
74
-
-
70350755706
-
Three human ARX mutations cause the lissencephaly-like and mental retardation with epilepsy-like pleiotropic phenotypes in mice
-
Kitamura K., Itou Y., Yanazawa M., Ohsawa M., Suzuki-Migishima R., Umeki Y., Hohjoh H., Yanagawa Y., Shinba T., Itoh M., et al. Three human ARX mutations cause the lissencephaly-like and mental retardation with epilepsy-like pleiotropic phenotypes in mice. Hum. Mol. Genet. 2009, 18:3708-3724.
-
(2009)
Hum. Mol. Genet.
, vol.18
, pp. 3708-3724
-
-
Kitamura, K.1
Itou, Y.2
Yanazawa, M.3
Ohsawa, M.4
Suzuki-Migishima, R.5
Umeki, Y.6
Hohjoh, H.7
Yanagawa, Y.8
Shinba, T.9
Itoh, M.10
-
75
-
-
84888090217
-
Temporal fate specification and neural progenitor competence during development
-
Kohwi M., Doe C.Q. Temporal fate specification and neural progenitor competence during development. Nat. Rev. Neurosci. 2013, 14:823-838.
-
(2013)
Nat. Rev. Neurosci.
, vol.14
, pp. 823-838
-
-
Kohwi, M.1
Doe, C.Q.2
-
76
-
-
70449653431
-
Human-specific transcriptional regulation of CNS development genes by FOXP2
-
Konopka G., Bomar J.M., Winden K., Coppola G., Jonsson Z.O., Gao F., Peng S., Preuss T.M., Wohlschlegel J.A., Geschwind D.H. Human-specific transcriptional regulation of CNS development genes by FOXP2. Nature 2009, 462:213-217.
-
(2009)
Nature
, vol.462
, pp. 213-217
-
-
Konopka, G.1
Bomar, J.M.2
Winden, K.3
Coppola, G.4
Jonsson, Z.O.5
Gao, F.6
Peng, S.7
Preuss, T.M.8
Wohlschlegel, J.A.9
Geschwind, D.H.10
-
77
-
-
0024584093
-
Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice
-
Kothary R., Clapoff S., Darling S., Perry M.D., Moran L.A., Rossant J. Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice. Development 1989, 105:707-714.
-
(1989)
Development
, vol.105
, pp. 707-714
-
-
Kothary, R.1
Clapoff, S.2
Darling, S.3
Perry, M.D.4
Moran, L.A.5
Rossant, J.6
-
78
-
-
84897126113
-
Psychiatric disorders: diagnosis to therapy
-
Krystal J.H., State M.W. Psychiatric disorders: diagnosis to therapy. Cell 2014, 157:201-214.
-
(2014)
Cell
, vol.157
, pp. 201-214
-
-
Krystal, J.H.1
State, M.W.2
-
79
-
-
84871890067
-
Distant activation of transcription: mechanisms of enhancer action
-
Kulaeva O.I., Nizovtseva E.V., Polikanov Y.S., Ulianov S.V., Studitsky V.M. Distant activation of transcription: mechanisms of enhancer action. Mol. Cell. Biol. 2012, 32:4892-4897.
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 4892-4897
-
-
Kulaeva, O.I.1
Nizovtseva, E.V.2
Polikanov, Y.S.3
Ulianov, S.V.4
Studitsky, V.M.5
-
80
-
-
4243198352
-
Regulation of Otx2 expression and its functions in mouse forebrain and midbrain
-
Kurokawa D., Kiyonari H., Nakayama R., Kimura-Yoshida C., Matsuo I., Aizawa S. Regulation of Otx2 expression and its functions in mouse forebrain and midbrain. Development 2004, 131:3319-3331.
-
(2004)
Development
, vol.131
, pp. 3319-3331
-
-
Kurokawa, D.1
Kiyonari, H.2
Nakayama, R.3
Kimura-Yoshida, C.4
Matsuo, I.5
Aizawa, S.6
-
81
-
-
84896710864
-
Otx2 expression in anterior neuroectoderm and forebrain/midbrain is directed by more than six enhancers
-
Kurokawa D., Ohmura T., Sakurai Y., Inoue K., Suda Y., Aizawa S. Otx2 expression in anterior neuroectoderm and forebrain/midbrain is directed by more than six enhancers. Dev. Biol. 2014, 387:203-213.
-
(2014)
Dev. Biol.
, vol.387
, pp. 203-213
-
-
Kurokawa, D.1
Ohmura, T.2
Sakurai, Y.3
Inoue, K.4
Suda, Y.5
Aizawa, S.6
-
82
-
-
84863882671
-
Mechanisms of transcriptional precision in animal development
-
Lagha M., Bothma J.P., Levine M. Mechanisms of transcriptional precision in animal development. Trends Genet. 2012, 28:409-416.
-
(2012)
Trends Genet.
, vol.28
, pp. 409-416
-
-
Lagha, M.1
Bothma, J.P.2
Levine, M.3
-
83
-
-
84902023295
-
BHLH factors in neurogenesis and neuronal subtype specification
-
Elsevier, J.L.R. Rubenstein, P. Rakic (Eds.)
-
Lai H.C., Meredith D.M., Johnson J.E. bHLH factors in neurogenesis and neuronal subtype specification. Patterning and Cell Type Specification in the Developing CNS and PNS 2013, 333-354. Elsevier. J.L.R. Rubenstein, P. Rakic (Eds.).
-
(2013)
Patterning and Cell Type Specification in the Developing CNS and PNS
, pp. 333-354
-
-
Lai, H.C.1
Meredith, D.M.2
Johnson, J.E.3
-
84
-
-
84891828460
-
Pyramidal neurons in prefrontal cortex receive subtype-specific forms of excitation and inhibition
-
Lee A.T., Gee S.M., Vogt D., Patel T., Rubenstein J.L., Sohal V.S. Pyramidal neurons in prefrontal cortex receive subtype-specific forms of excitation and inhibition. Neuron 2014, 81:61-68.
-
(2014)
Neuron
, vol.81
, pp. 61-68
-
-
Lee, A.T.1
Gee, S.M.2
Vogt, D.3
Patel, T.4
Rubenstein, J.L.5
Sohal, V.S.6
-
85
-
-
84858440747
-
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
-
Lenhard B., Sandelin A., Carninci P. Metazoan promoters: emerging characteristics and insights into transcriptional regulation. Nat. Rev. Genet. 2012, 13:233-245.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 233-245
-
-
Lenhard, B.1
Sandelin, A.2
Carninci, P.3
-
86
-
-
0042810698
-
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
-
Lettice L.A., Heaney S.J.H., Purdie L.A., Li L., de Beer P., Oostra B.A., Goode D., Elgar G., Hill R.E., de Graaff E. A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum. Mol. Genet. 2003, 12:1725-1735.
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 1725-1735
-
-
Lettice, L.A.1
Heaney, S.J.H.2
Purdie, L.A.3
Li, L.4
de Beer, P.5
Oostra, B.A.6
Goode, D.7
Elgar, G.8
Hill, R.E.9
de Graaff, E.10
-
87
-
-
81355148487
-
Enhancer-adoption as a mechanism of human developmental disease
-
Lettice L.A., Daniels S., Sweeney E., Venkataraman S., Devenney P.S., Gautier P., Morrison H., Fantes J., Hill R.E., FitzPatrick D.R. Enhancer-adoption as a mechanism of human developmental disease. Hum. Mutat. 2011, 32:1492-1499.
-
(2011)
Hum. Mutat.
, vol.32
, pp. 1492-1499
-
-
Lettice, L.A.1
Daniels, S.2
Sweeney, E.3
Venkataraman, S.4
Devenney, P.S.5
Gautier, P.6
Morrison, H.7
Fantes, J.8
Hill, R.E.9
FitzPatrick, D.R.10
-
88
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E., van Berkum N.L., Williams L., Imakaev M., Ragoczy T., Telling A., Amit I., Lajoie B.R., Sabo P.J., Dorschner M.O., et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009, 326:289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
89
-
-
33947524099
-
Lhx6 activity is required for the normal migration and specification of cortical interneuron subtypes
-
Liodis P., Denaxa M., Grigoriou M., Akufo-Addo C., Yanagawa Y., Pachnis V. Lhx6 activity is required for the normal migration and specification of cortical interneuron subtypes. J.Neurosci. 2007, 27:3078-3089.
-
(2007)
J.Neurosci.
, vol.27
, pp. 3078-3089
-
-
Liodis, P.1
Denaxa, M.2
Grigoriou, M.3
Akufo-Addo, C.4
Yanagawa, Y.5
Pachnis, V.6
-
90
-
-
84879663784
-
Global epigenomic reconfiguration during mammalian brain development
-
1237905-1237905
-
Lister R., Mukamel E.A., Nery J.R., Urich M., Puddifoot C.A., Johnson N.D., Lucero J., Huang Y., Dwork A.J., Schultz M.D., et al. Global epigenomic reconfiguration during mammalian brain development. Science 2013, 341. 1237905-1237905.
-
(2013)
Science
, vol.341
-
-
Lister, R.1
Mukamel, E.A.2
Nery, J.R.3
Urich, M.4
Puddifoot, C.A.5
Johnson, N.D.6
Lucero, J.7
Huang, Y.8
Dwork, A.J.9
Schultz, M.D.10
-
91
-
-
0037439740
-
DLX5 regulates development of peripheral and central components of the olfactory system
-
Long J.E., Garel S., Depew M.J., Tobet S., Rubenstein J.L.R. DLX5 regulates development of peripheral and central components of the olfactory system. J.Neurosci. 2003, 23:568-578.
-
(2003)
J.Neurosci.
, vol.23
, pp. 568-578
-
-
Long, J.E.1
Garel, S.2
Depew, M.J.3
Tobet, S.4
Rubenstein, J.L.R.5
-
92
-
-
33947542776
-
Dlx-dependent and -independent regulation of olfactory bulb interneuron differentiation
-
Long J.E., Garel S., Alvarez-Dolado M., Yoshikawa K., Osumi N., Alvarez-Buylla A., Rubenstein J.L.R. Dlx-dependent and -independent regulation of olfactory bulb interneuron differentiation. J.Neurosci. 2007, 27:3230-3243.
-
(2007)
J.Neurosci.
, vol.27
, pp. 3230-3243
-
-
Long, J.E.1
Garel, S.2
Alvarez-Dolado, M.3
Yoshikawa, K.4
Osumi, N.5
Alvarez-Buylla, A.6
Rubenstein, J.L.R.7
-
93
-
-
69449104014
-
Dlx1&2 and Mash1 transcription factors control MGE and CGE patterning and differentiation through parallel and overlapping pathways
-
Long J.E., Cobos I., Potter G.B., Rubenstein J.L.R. Dlx1&2 and Mash1 transcription factors control MGE and CGE patterning and differentiation through parallel and overlapping pathways. Cereb. Cortex 2009, 19(Suppl 1):i96-i106.
-
(2009)
Cereb. Cortex
, vol.19
, pp. i96-i106
-
-
Long, J.E.1
Cobos, I.2
Potter, G.B.3
Rubenstein, J.L.R.4
-
94
-
-
59049084200
-
Dlx1&2 and Mash1 transcription factors control striatal patterning and differentiation through parallel and overlapping pathways
-
Long J.E., Swan C., Liang W.S., Cobos I., Potter G.B., Rubenstein J.L.R. Dlx1&2 and Mash1 transcription factors control striatal patterning and differentiation through parallel and overlapping pathways. J.Comp. Neurol. 2009, 512:556-572.
-
(2009)
J.Comp. Neurol.
, vol.512
, pp. 556-572
-
-
Long, J.E.1
Swan, C.2
Liang, W.S.3
Cobos, I.4
Potter, G.B.5
Rubenstein, J.L.R.6
-
95
-
-
84888426187
-
Specification of cortical projection neurons
-
Elsevier, J.L.R. Rubenstein, P. Rakic (Eds.)
-
MacDonald J.L., Fame R.M., Azim E., Shnider S.J., Molyneaux B.J., Arlotta P., Macklis J.D. Specification of cortical projection neurons. Patterning and Cell Type Specification in the Developing CNS and PNS 2013, 475-502. Elsevier. J.L.R. Rubenstein, P. Rakic (Eds.).
-
(2013)
Patterning and Cell Type Specification in the Developing CNS and PNS
, pp. 475-502
-
-
MacDonald, J.L.1
Fame, R.M.2
Azim, E.3
Shnider, S.J.4
Molyneaux, B.J.5
Arlotta, P.6
Macklis, J.D.7
-
96
-
-
0037135262
-
Forebrain-specific promoter/enhancer D6 derived from the mouse Dach1 gene controls expression in neural stem cells
-
Machon O., van den Bout C.J., Backman M., Røsok Ø., Caubit X., Fromm S.H., Geronimo B., Krauss S. Forebrain-specific promoter/enhancer D6 derived from the mouse Dach1 gene controls expression in neural stem cells. Neuroscience 2002, 112:951-966.
-
(2002)
Neuroscience
, vol.112
, pp. 951-966
-
-
Machon, O.1
van den Bout, C.J.2
Backman, M.3
Røsok, Ø.4
Caubit, X.5
Fromm, S.H.6
Geronimo, B.7
Krauss, S.8
-
97
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
Mali P., Yang L., Esvelt K.M., Aach J., Guell M., DiCarlo J.E., Norville J.E., Church G.M. RNA-guided human genome engineering via Cas9. Science 2013, 339:823-826.
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
DiCarlo, J.E.6
Norville, J.E.7
Church, G.M.8
-
98
-
-
77949375239
-
Reduced conditioned fear response in mice that lack Dlx1 and show subtype-specific loss of interneurons
-
Mao R., Page D.T., Merzlyak I., Kim C., Tecott L.H., Janak P.H., Rubenstein J.L.R., Sur M. Reduced conditioned fear response in mice that lack Dlx1 and show subtype-specific loss of interneurons. J Neurodev Disord 2009, 1:224-236.
-
(2009)
J Neurodev Disord
, vol.1
, pp. 224-236
-
-
Mao, R.1
Page, D.T.2
Merzlyak, I.3
Kim, C.4
Tecott, L.H.5
Janak, P.H.6
Rubenstein, J.L.R.7
Sur, M.8
-
99
-
-
84864936356
-
Emx2 is a dose-dependent negative regulator of Sox2 telencephalic enhancers
-
Mariani J., Favaro R., Lancini C., Vaccari G., Ferri A.L., Bertolini J., Tonoli D., Latorre E., Caccia R., Ronchi A., et al. Emx2 is a dose-dependent negative regulator of Sox2 telencephalic enhancers. Nucleic Acids Res. 2012, 40:6461-6476.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 6461-6476
-
-
Mariani, J.1
Favaro, R.2
Lancini, C.3
Vaccari, G.4
Ferri, A.L.5
Bertolini, J.6
Tonoli, D.7
Latorre, E.8
Caccia, R.9
Ronchi, A.10
-
100
-
-
67649391197
-
Targeted loss ofArx results in a developmental epilepsy mouse model and recapitulates the human phenotype in heterozygous females
-
Marsh E., Fulp C., Gomez E., Nasrallah I., Minarcik J., Sudi J., Christian S.L., Mancini G., Labosky P., Dobyns W., et al. Targeted loss ofArx results in a developmental epilepsy mouse model and recapitulates the human phenotype in heterozygous females. Brain 2009, 132:1563-1576.
-
(2009)
Brain
, vol.132
, pp. 1563-1576
-
-
Marsh, E.1
Fulp, C.2
Gomez, E.3
Nasrallah, I.4
Minarcik, J.5
Sudi, J.6
Christian, S.L.7
Mancini, G.8
Labosky, P.9
Dobyns, W.10
-
101
-
-
84886999278
-
Progress in the genetics of polygenic brain disorders: significant new challenges for neurobiology
-
McCarroll S.A., Hyman S.E. Progress in the genetics of polygenic brain disorders: significant new challenges for neurobiology. Neuron 2013, 80:578-587.
-
(2013)
Neuron
, vol.80
, pp. 578-587
-
-
McCarroll, S.A.1
Hyman, S.E.2
-
102
-
-
77951702343
-
Genetic heterogeneity in human disease
-
McClellan J., King M.-C. Genetic heterogeneity in human disease. Cell 2010, 141:210-217.
-
(2010)
Cell
, vol.141
, pp. 210-217
-
-
McClellan, J.1
King, M.-C.2
-
103
-
-
84872193366
-
Dlx1&2-dependent expression of Zfhx1b (Sip1, Zeb2) regulates the fate switch between cortical and striatal interneurons
-
McKinsey G.L., Lindtner S., Trzcinski B., Visel A., Pennacchio L.A., Huylebroeck D., Higashi Y., Rubenstein J.L.R. Dlx1&2-dependent expression of Zfhx1b (Sip1, Zeb2) regulates the fate switch between cortical and striatal interneurons. Neuron 2013, 77:83-98.
-
(2013)
Neuron
, vol.77
, pp. 83-98
-
-
McKinsey, G.L.1
Lindtner, S.2
Trzcinski, B.3
Visel, A.4
Pennacchio, L.A.5
Huylebroeck, D.6
Higashi, Y.7
Rubenstein, J.L.R.8
-
104
-
-
79952386187
-
Human-specific loss of regulatory DNA and the evolution of human-specific traits
-
McLean C.Y., Reno P.L., Pollen A.A., Bassan A.I., Capellini T.D., Guenther C., Indjeian V.B., Lim X., Menke D.B., Schaar B.T., et al. Human-specific loss of regulatory DNA and the evolution of human-specific traits. Nature 2011, 471:216-219.
-
(2011)
Nature
, vol.471
, pp. 216-219
-
-
McLean, C.Y.1
Reno, P.L.2
Pollen, A.A.3
Bassan, A.I.4
Capellini, T.D.5
Guenther, C.6
Indjeian, V.B.7
Lim, X.8
Menke, D.B.9
Schaar, B.T.10
-
105
-
-
84886084801
-
Locus-specific editing of histone modifications at endogenous enhancers
-
Mendenhall E.M., Williamson K.E., Reyon D., Zou J.Y., Ram O., Joung J.K., Bernstein B.E. Locus-specific editing of histone modifications at endogenous enhancers. Nat. Biotechnol. 2013, 31:1133-1136.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1133-1136
-
-
Mendenhall, E.M.1
Williamson, K.E.2
Reyon, D.3
Zou, J.Y.4
Ram, O.5
Joung, J.K.6
Bernstein, B.E.7
-
106
-
-
84900303453
-
Transcriptional landscape of the prenatal human brain
-
Miller J.A., Ding S.-L., Sunkin S.M., Smith K.A., Ng L., Szafer A., Ebbert A., Riley Z.L., Royall J.J., Aiona K., et al. Transcriptional landscape of the prenatal human brain. Nature 2014, 508:199-206.
-
(2014)
Nature
, vol.508
, pp. 199-206
-
-
Miller, J.A.1
Ding, S.-L.2
Sunkin, S.M.3
Smith, K.A.4
Ng, L.5
Szafer, A.6
Ebbert, A.7
Riley, Z.L.8
Royall, J.J.9
Aiona, K.10
-
107
-
-
34249084013
-
Neuronal subtype specification in the cerebral cortex
-
Molyneaux B.J., Arlotta P., Menezes J.R.L., Macklis J.D. Neuronal subtype specification in the cerebral cortex. Nat. Rev. Neurosci. 2007, 8:427-437.
-
(2007)
Nat. Rev. Neurosci.
, vol.8
, pp. 427-437
-
-
Molyneaux, B.J.1
Arlotta, P.2
Menezes, J.R.L.3
Macklis, J.D.4
-
108
-
-
81855227640
-
A regulatory archipelago controls Hox genes transcription in digits
-
Montavon T., Soshnikova N., Mascrez B., Joye E., Thevenet L., Splinter E., de Laat W., Spitz F., Duboule D. A regulatory archipelago controls Hox genes transcription in digits. Cell 2011, 147:1132-1145.
-
(2011)
Cell
, vol.147
, pp. 1132-1145
-
-
Montavon, T.1
Soshnikova, N.2
Mascrez, B.3
Joye, E.4
Thevenet, L.5
Splinter, E.6
de Laat, W.7
Spitz, F.8
Duboule, D.9
-
109
-
-
84899670369
-
FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells
-
Murtha M., Tokcaer-Keskin Z., Tang Z., Strino F., Chen X., Wang Y., Xi X., Basilico C., Brown S., Bonneau R., et al. FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells. Nat. Methods 2014, 11:559-565.
-
(2014)
Nat. Methods
, vol.11
, pp. 559-565
-
-
Murtha, M.1
Tokcaer-Keskin, Z.2
Tang, Z.3
Strino, F.4
Chen, X.5
Wang, Y.6
Xi, X.7
Basilico, C.8
Brown, S.9
Bonneau, R.10
-
110
-
-
84866361701
-
Circuitry and dynamics of human transcription factor regulatory networks
-
Neph S., Stergachis A.B., Reynolds A., Sandstrom R., Borenstein E., Stamatoyannopoulos J.A. Circuitry and dynamics of human transcription factor regulatory networks. Cell 2012, 150:1274-1286.
-
(2012)
Cell
, vol.150
, pp. 1274-1286
-
-
Neph, S.1
Stergachis, A.B.2
Reynolds, A.3
Sandstrom, R.4
Borenstein, E.5
Stamatoyannopoulos, J.A.6
-
112
-
-
50849121011
-
Postmitotic Nkx2-1 controls the migration of telencephalic interneurons by direct repression of guidance receptors
-
Nóbrega-Pereira S., Kessaris N., Du T., Kimura S., Anderson S.A., Marín O. Postmitotic Nkx2-1 controls the migration of telencephalic interneurons by direct repression of guidance receptors. Neuron 2008, 59:733-745.
-
(2008)
Neuron
, vol.59
, pp. 733-745
-
-
Nóbrega-Pereira, S.1
Kessaris, N.2
Du, T.3
Kimura, S.4
Anderson, S.A.5
Marín, O.6
-
113
-
-
84894598129
-
Rapid and pervasive changes in genome-wide enhancer usage during mammalian development
-
Nord A.S., Blow M.J., Attanasio C., Akiyama J.A., Holt A., Hosseini R., Phouanenavong S., Plajzer-Frick I., Shoukry M., Afzal V., et al. Rapid and pervasive changes in genome-wide enhancer usage during mammalian development. Cell 2013, 155:1521-1531.
-
(2013)
Cell
, vol.155
, pp. 1521-1531
-
-
Nord, A.S.1
Blow, M.J.2
Attanasio, C.3
Akiyama, J.A.4
Holt, A.5
Hosseini, R.6
Phouanenavong, S.7
Plajzer-Frick, I.8
Shoukry, M.9
Afzal, V.10
-
114
-
-
76049088399
-
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain
-
Nowick K., Gernat T., Almaas E., Stubbs L. Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proc. Natl. Acad. Sci. USA 2009, 106:22358-22363.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 22358-22363
-
-
Nowick, K.1
Gernat, T.2
Almaas, E.3
Stubbs, L.4
-
115
-
-
84902018340
-
Area patterning of the mammalian cortex
-
Elsevier, J.L.R. Rubenstein, P. Rakic (Eds.)
-
O'Leary D.D.M., Stocker A.M., Zembrzycki A. Area patterning of the mammalian cortex. Patterning and Cell Type Specification in the Developing CNS and PNS 2013, 61-85. Elsevier. J.L.R. Rubenstein, P. Rakic (Eds.).
-
(2013)
Patterning and Cell Type Specification in the Developing CNS and PNS
, pp. 61-85
-
-
O'Leary, D.D.M.1
Stocker, A.M.2
Zembrzycki, A.3
-
116
-
-
79957589237
-
Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations
-
O'Roak B.J., Deriziotis P., Lee C., Vives L., Schwartz J.J., Girirajan S., Karakoc E., Mackenzie A.P., Ng S.B., Baker C., et al. Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations. Nat. Genet. 2011, 43:585-589.
-
(2011)
Nat. Genet.
, vol.43
, pp. 585-589
-
-
O'Roak, B.J.1
Deriziotis, P.2
Lee, C.3
Vives, L.4
Schwartz, J.J.5
Girirajan, S.6
Karakoc, E.7
Mackenzie, A.P.8
Ng, S.B.9
Baker, C.10
-
117
-
-
84871448593
-
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders
-
O'Roak B.J., Vives L., Fu W., Egertson J.D., Stanaway I.B., Phelps I.G., Carvill G., Kumar A., Lee C., Ankenman K., et al. Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders. Science 2012, 338:1619-1622.
-
(2012)
Science
, vol.338
, pp. 1619-1622
-
-
O'Roak, B.J.1
Vives, L.2
Fu, W.3
Egertson, J.D.4
Stanaway, I.B.5
Phelps, I.G.6
Carvill, G.7
Kumar, A.8
Lee, C.9
Ankenman, K.10
-
118
-
-
84860741138
-
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
-
O'Roak B.J., Vives L., Girirajan S., Karakoc E., Krumm N., Coe B.P., Levy R., Ko A., Lee C., Smith J.D., et al. Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations. Nature 2012, 485:246-250.
-
(2012)
Nature
, vol.485
, pp. 246-250
-
-
O'Roak, B.J.1
Vives, L.2
Girirajan, S.3
Karakoc, E.4
Krumm, N.5
Coe, B.P.6
Levy, R.7
Ko, A.8
Lee, C.9
Smith, J.D.10
-
119
-
-
34249818182
-
Tissue-specific transcriptional regulation has diverged significantly between human and mouse
-
Odom D.T., Dowell R.D., Jacobsen E.S., Gordon W., Danford T.W., MacIsaac K.D., Rolfe P.A., Conboy C.M., Gifford D.K., Fraenkel E. Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat. Genet. 2007, 39:730-732.
-
(2007)
Nat. Genet.
, vol.39
, pp. 730-732
-
-
Odom, D.T.1
Dowell, R.D.2
Jacobsen, E.S.3
Gordon, W.4
Danford, T.W.5
MacIsaac, K.D.6
Rolfe, P.A.7
Conboy, C.M.8
Gifford, D.K.9
Fraenkel, E.10
-
120
-
-
84898684536
-
A mesoscale connectome of the mouse brain
-
Oh S.W., Harris J.A., Ng L., Winslow B., Cain N., Mihalas S., Wang Q., Lau C., Kuan L., Henry A.M., et al. A mesoscale connectome of the mouse brain. Nature 2014, 508:207-214.
-
(2014)
Nature
, vol.508
, pp. 207-214
-
-
Oh, S.W.1
Harris, J.A.2
Ng, L.3
Winslow, B.4
Cain, N.5
Mihalas, S.6
Wang, Q.7
Lau, C.8
Kuan, L.9
Henry, A.M.10
-
121
-
-
84873506311
-
Function and regulation of AUTS2, a gene implicated in autism and human evolution
-
Oksenberg N., Stevison L., Wall J.D., Ahituv N. Function and regulation of AUTS2, a gene implicated in autism and human evolution. PLoS Genet. 2013, 9:e1003221.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003221
-
-
Oksenberg, N.1
Stevison, L.2
Wall, J.D.3
Ahituv, N.4
-
122
-
-
84868203852
-
Interneuron, interrupted: molecular pathogenesis of ARX mutations and X-linked infantile spasms
-
Olivetti P.R., Noebels J.L. Interneuron, interrupted: molecular pathogenesis of ARX mutations and X-linked infantile spasms. Curr. Opin. Neurobiol. 2012, 22:859-865.
-
(2012)
Curr. Opin. Neurobiol.
, vol.22
, pp. 859-865
-
-
Olivetti, P.R.1
Noebels, J.L.2
-
123
-
-
3242878193
-
ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes
-
W280-6
-
Ovcharenko I., Nobrega M.A., Loots G.G., Stubbs L. ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes. Nucleic Acids Res. 2004, 32. W280-6.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Ovcharenko, I.1
Nobrega, M.A.2
Loots, G.G.3
Stubbs, L.4
-
124
-
-
84889561601
-
Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism
-
Parikshak N.N., Luo R., Zhang A., Won H., Lowe J.K., Chandran V., Horvath S., Geschwind D.H. Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism. Cell 2013, 155:1008-1021.
-
(2013)
Cell
, vol.155
, pp. 1008-1021
-
-
Parikshak, N.N.1
Luo, R.2
Zhang, A.3
Won, H.4
Lowe, J.K.5
Chandran, V.6
Horvath, S.7
Geschwind, D.H.8
-
125
-
-
84887072795
-
Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
-
NISC Comparative Sequencing Program, National Institutes of Health Intramural Sequencing Center Comparative Sequencing Program AuthorsNational Institutes of Health Intramural Sequencing Center Comparative Sequencing Program Authors, NISC Comparative Sequencing Program AuthorsNISC Comparative Sequencing Program Authors
-
Parker S.C.J., Stitzel M.L., Taylor D.L., Orozco J.M., Erdos M.R., Akiyama J.A., van Bueren K.L., Chines P.S., Narisu N., Black B.L., et al. Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants. Proc. Natl. Acad. Sci. USA 2013, 110:17921-17926. NISC Comparative Sequencing Program, National Institutes of Health Intramural Sequencing Center Comparative Sequencing Program AuthorsNational Institutes of Health Intramural Sequencing Center Comparative Sequencing Program Authors, NISC Comparative Sequencing Program AuthorsNISC Comparative Sequencing Program Authors.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 17921-17926
-
-
Parker, S.C.J.1
Stitzel, M.L.2
Taylor, D.L.3
Orozco, J.M.4
Erdos, M.R.5
Akiyama, J.A.6
van Bueren, K.L.7
Chines, P.S.8
Narisu, N.9
Black, B.L.10
-
126
-
-
84901843699
-
Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex
-
Pattabiraman K., Golonzhka O., Lindtner S., Nord A.S., Taher L., Hoch R., Silberberg S.N., Zhang D., Chen B., Zeng H., et al. Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex. Neuron 2014, 82:989-1003.
-
(2014)
Neuron
, vol.82
, pp. 989-1003
-
-
Pattabiraman, K.1
Golonzhka, O.2
Lindtner, S.3
Nord, A.S.4
Taher, L.5
Hoch, R.6
Silberberg, S.N.7
Zhang, D.8
Chen, B.9
Zeng, H.10
-
127
-
-
84863230316
-
Massively parallel functional dissection of mammalian enhancers invivo
-
Patwardhan R.P., Hiatt J.B., Witten D.M., Kim M.J., Smith R.P., May D., Lee C., Andrie J.M., Lee S.-I., Cooper G.M., et al. Massively parallel functional dissection of mammalian enhancers invivo. Nat. Biotechnol. 2012, 30:265-270.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 265-270
-
-
Patwardhan, R.P.1
Hiatt, J.B.2
Witten, D.M.3
Kim, M.J.4
Smith, R.P.5
May, D.6
Lee, C.7
Andrie, J.M.8
Lee, S.-I.9
Cooper, G.M.10
-
128
-
-
33751316959
-
Invivo enhancer analysis of human conserved non-coding sequences
-
Pennacchio L.A., Ahituv N., Moses A.M., Prabhakar S., Nobrega M.A., Shoukry M., Minovitsky S., Dubchak I., Holt A., Lewis K.D., et al. Invivo enhancer analysis of human conserved non-coding sequences. Nature 2006, 444:499-502.
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
-
129
-
-
34547210748
-
Dlx1 and Dlx2 control neuronal versus oligodendroglial cell fate acquisition in the developing forebrain
-
Petryniak M.A., Potter G.B., Rowitch D.H., Rubenstein J.L.R. Dlx1 and Dlx2 control neuronal versus oligodendroglial cell fate acquisition in the developing forebrain. Neuron 2007, 55:417-433.
-
(2007)
Neuron
, vol.55
, pp. 417-433
-
-
Petryniak, M.A.1
Potter, G.B.2
Rowitch, D.H.3
Rubenstein, J.L.R.4
-
130
-
-
84892772773
-
Temporal specification and bilaterality of human neocortical topographic gene expression
-
Pletikos M., Sousa A.M.M., Sedmak G., Meyer K.A., Zhu Y., Cheng F., Li M., Kawasawa Y.I., Sestan N. Temporal specification and bilaterality of human neocortical topographic gene expression. Neuron 2014, 81:321-332.
-
(2014)
Neuron
, vol.81
, pp. 321-332
-
-
Pletikos, M.1
Sousa, A.M.M.2
Sedmak, G.3
Meyer, K.A.4
Zhu, Y.5
Cheng, F.6
Li, M.7
Kawasawa, Y.I.8
Sestan, N.9
-
131
-
-
77956601621
-
An SNP in an ultraconserved regulatory element affects Dlx5/Dlx6 regulation in the forebrain
-
Poitras L., Yu M., Lesage-Pelletier C., Macdonald R.B., Gagné J.-P., Hatch G., Kelly I., Hamilton S.P., Rubenstein J.L.R., Poirier G.G., Ekker M. An SNP in an ultraconserved regulatory element affects Dlx5/Dlx6 regulation in the forebrain. Development 2010, 137:3089-3097.
-
(2010)
Development
, vol.137
, pp. 3089-3097
-
-
Poitras, L.1
Yu, M.2
Lesage-Pelletier, C.3
Macdonald, R.B.4
Gagné, J.-P.5
Hatch, G.6
Kelly, I.7
Hamilton, S.P.8
Rubenstein, J.L.R.9
Poirier, G.G.10
Ekker, M.11
-
132
-
-
33750428182
-
Forces shaping the fastest evolving regions in the human genome
-
Pollard K.S., Salama S.R., King B., Kern A.D., Dreszer T., Katzman S., Siepel A., Pedersen J.S., Bejerano G., Baertsch R., et al. Forces shaping the fastest evolving regions in the human genome. PLoS Genet. 2006, 2:e168.
-
(2006)
PLoS Genet.
, vol.2
, pp. e168
-
-
Pollard, K.S.1
Salama, S.R.2
King, B.3
Kern, A.D.4
Dreszer, T.5
Katzman, S.6
Siepel, A.7
Pedersen, J.S.8
Bejerano, G.9
Baertsch, R.10
-
133
-
-
59049084993
-
Generation of Cre-transgenic mice using Dlx1/Dlx2 enhancers and their characterization in GABAergic interneurons
-
Potter G.B., Petryniak M.A., Shevchenko E., McKinsey G.L., Ekker M., Rubenstein J.L.R. Generation of Cre-transgenic mice using Dlx1/Dlx2 enhancers and their characterization in GABAergic interneurons. Mol. Cell. Neurosci. 2009, 40:167-186.
-
(2009)
Mol. Cell. Neurosci.
, vol.40
, pp. 167-186
-
-
Potter, G.B.1
Petryniak, M.A.2
Shevchenko, E.3
McKinsey, G.L.4
Ekker, M.5
Rubenstein, J.L.R.6
-
134
-
-
33750737061
-
Accelerated evolution of conserved noncoding sequences in humans
-
786-786
-
Prabhakar S., Noonan J.P., Pääbo S., Rubin E.M. Accelerated evolution of conserved noncoding sequences in humans. Science 2006, 314. 786-786.
-
(2006)
Science
, vol.314
-
-
Prabhakar, S.1
Noonan, J.P.2
Pääbo, S.3
Rubin, E.M.4
-
135
-
-
33745628791
-
Close sequence comparisons are sufficient to identify human cis-regulatory elements
-
Prabhakar S., Poulin F., Shoukry M., Afzal V., Rubin E.M., Couronne O., Pennacchio L.A. Close sequence comparisons are sufficient to identify human cis-regulatory elements. Genome Res. 2006, 16:855-863.
-
(2006)
Genome Res.
, vol.16
, pp. 855-863
-
-
Prabhakar, S.1
Poulin, F.2
Shoukry, M.3
Afzal, V.4
Rubin, E.M.5
Couronne, O.6
Pennacchio, L.A.7
-
136
-
-
51149097366
-
Human-specific gain of function in a developmental enhancer
-
Prabhakar S., Visel A., Akiyama J.A., Shoukry M., Lewis K.D., Holt A., Plajzer-Frick I., Morrison H., Fitzpatrick D.R., Afzal V., et al. Human-specific gain of function in a developmental enhancer. Science 2008, 321:1346-1350.
-
(2008)
Science
, vol.321
, pp. 1346-1350
-
-
Prabhakar, S.1
Visel, A.2
Akiyama, J.A.3
Shoukry, M.4
Lewis, K.D.5
Holt, A.6
Plajzer-Frick, I.7
Morrison, H.8
Fitzpatrick, D.R.9
Afzal, V.10
-
137
-
-
0028808204
-
Null mutation of Dlx-2 results in abnormal morphogenesis of proximal first and second branchial arch derivatives and abnormal differentiation in the forebrain
-
Qiu M., Bulfone A., Martinez S., Meneses J.J., Shimamura K., Pedersen R.A., Rubenstein J.L. Null mutation of Dlx-2 results in abnormal morphogenesis of proximal first and second branchial arch derivatives and abnormal differentiation in the forebrain. Genes Dev. 1995, 9:2523-2538.
-
(1995)
Genes Dev.
, vol.9
, pp. 2523-2538
-
-
Qiu, M.1
Bulfone, A.2
Martinez, S.3
Meneses, J.J.4
Shimamura, K.5
Pedersen, R.A.6
Rubenstein, J.L.7
-
138
-
-
84867068639
-
A transcriptomic hourglass in plant embryogenesis
-
Quint M., Drost H.-G., Gabel A., Ullrich K.K., Bönn M., Grosse I. A transcriptomic hourglass in plant embryogenesis. Nature 2012, 490:98-101.
-
(2012)
Nature
, vol.490
, pp. 98-101
-
-
Quint, M.1
Drost, H.-G.2
Gabel, A.3
Ullrich, K.K.4
Bönn, M.5
Grosse, I.6
-
139
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias A., Bajpai R., Swigut T., Brugmann S.A., Flynn R.A., Wysocka J. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 2011, 470:279-283.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
140
-
-
0023785808
-
Specification of cerebral cortical areas
-
Rakic P. Specification of cerebral cortical areas. Science 1988, 241:170-176.
-
(1988)
Science
, vol.241
, pp. 170-176
-
-
Rakic, P.1
-
141
-
-
77649299348
-
An atlas of combinatorial transcriptional regulation in mouse and man
-
Ravasi T., Suzuki H., Cannistraci C.V., Katayama S., Bajic V.B., Tan K., Akalin A., Schmeier S., Kanamori-Katayama M., Bertin N., et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell 2010, 140:744-752.
-
(2010)
Cell
, vol.140
, pp. 744-752
-
-
Ravasi, T.1
Suzuki, H.2
Cannistraci, C.V.3
Katayama, S.4
Bajic, V.B.5
Tan, K.6
Akalin, A.7
Schmeier, S.8
Kanamori-Katayama, M.9
Bertin, N.10
-
142
-
-
84885020424
-
Genome-wide association analysis identifies 13 new risk loci for schizophrenia
-
Multicenter Genetic Studies of Schizophrenia Consortium, Psychosis Endophenotypes International ConsortiumPsychosis Endophenotypes International Consortium, Wellcome Trust Case Control Consortium 2Wellcome Trust Case Control Consortium 2
-
Ripke S., O'Dushlaine C., Chambert K., Moran J.L., Kähler A.K., Akterin S., Bergen S.E., Collins A.L., Crowley J.J., Fromer M., et al. Genome-wide association analysis identifies 13 new risk loci for schizophrenia. Nat. Genet. 2013, 45:1150-1159. Multicenter Genetic Studies of Schizophrenia Consortium, Psychosis Endophenotypes International ConsortiumPsychosis Endophenotypes International Consortium, Wellcome Trust Case Control Consortium 2Wellcome Trust Case Control Consortium 2.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1150-1159
-
-
Ripke, S.1
O'Dushlaine, C.2
Chambert, K.3
Moran, J.L.4
Kähler, A.K.5
Akterin, S.6
Bergen, S.E.7
Collins, A.L.8
Crowley, J.J.9
Fromer, M.10
-
143
-
-
84876686460
-
From neural development to cognition: unexpected roles for chromatin
-
Ronan J.L., Wu W., Crabtree G.R. From neural development to cognition: unexpected roles for chromatin. Nat. Rev. Genet. 2013, 14:347-359.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 347-359
-
-
Ronan, J.L.1
Wu, W.2
Crabtree, G.R.3
-
144
-
-
84858638769
-
Identification and analysis of conserved cis-regulatory regions of the MEIS1 gene
-
Royo J.L., Bessa J., Hidalgo C., Fernández-Miñán A., Tena J.J., Roncero Y., Gómez-Skarmeta J.L., Casares F. Identification and analysis of conserved cis-regulatory regions of the MEIS1 gene. PLoS ONE 2012, 7:e33617.
-
(2012)
PLoS ONE
, vol.7
, pp. e33617
-
-
Royo, J.L.1
Bessa, J.2
Hidalgo, C.3
Fernández-Miñán, A.4
Tena, J.J.5
Roncero, Y.6
Gómez-Skarmeta, J.L.7
Casares, F.8
-
147
-
-
77953062527
-
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
-
Schmidt D., Wilson M.D., Ballester B., Schwalie P.C., Brown G.D., Marshall A., Kutter C., Watt S., Martinez-Jimenez C.P., Mackay S., et al. Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science 2010, 328:1036-1040.
-
(2010)
Science
, vol.328
, pp. 1036-1040
-
-
Schmidt, D.1
Wilson, M.D.2
Ballester, B.3
Schwalie, P.C.4
Brown, G.D.5
Marshall, A.6
Kutter, C.7
Watt, S.8
Martinez-Jimenez, C.P.9
Mackay, S.10
-
148
-
-
0032727374
-
Building the heart piece by piece: modularity of cis-elements regulating Nkx2-5 transcription
-
Schwartz R.J., Olson E.N. Building the heart piece by piece: modularity of cis-elements regulating Nkx2-5 transcription. Development 1999, 126:4187-4192.
-
(1999)
Development
, vol.126
, pp. 4187-4192
-
-
Schwartz, R.J.1
Olson, E.N.2
-
149
-
-
0034020416
-
PipMaker-a web server for aligning two genomic DNA sequences
-
Schwartz S., Zhang Z., Frazer K.A., Smit A., Riemer C., Bouck J., Gibbs R., Hardison R., Miller W. PipMaker-a web server for aligning two genomic DNA sequences. Genome Res. 2000, 10:577-586.
-
(2000)
Genome Res.
, vol.10
, pp. 577-586
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.A.3
Smit, A.4
Riemer, C.5
Bouck, J.6
Gibbs, R.7
Hardison, R.8
Miller, W.9
-
150
-
-
84865291407
-
Chronic reduction in inhibition reduces receptive field size in mouse auditory cortex
-
Seybold B.A., Stanco A., Cho K.K.A., Potter G.B., Kim C., Sohal V.S., Rubenstein J.L.R., Schreiner C.E. Chronic reduction in inhibition reduces receptive field size in mouse auditory cortex. Proc. Natl. Acad. Sci. USA 2012, 109:13829-13834.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 13829-13834
-
-
Seybold, B.A.1
Stanco, A.2
Cho, K.K.A.3
Potter, G.B.4
Kim, C.5
Sohal, V.S.6
Rubenstein, J.L.R.7
Schreiner, C.E.8
-
151
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y., Yue F., McCleary D.F., Ye Z., Edsall L., Kuan S., Wagner U., Dixon J., Lee L., Lobanenkov V.V., Ren B. A map of the cis-regulatory sequences in the mouse genome. Nature 2012, 488:116-120.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
152
-
-
84861932338
-
Cis-regulatory control of corticospinal system development and evolution
-
Shim S., Kwan K.Y., Li M., Lefebvre V., Sestan N. cis-regulatory control of corticospinal system development and evolution. Nature 2012, 486:74-79.
-
(2012)
Nature
, vol.486
, pp. 74-79
-
-
Shim, S.1
Kwan, K.Y.2
Li, M.3
Lefebvre, V.4
Sestan, N.5
-
153
-
-
84899450857
-
Transcriptional enhancers: from properties to genome-wide predictions
-
Shlyueva D., Stampfel G., Stark A. Transcriptional enhancers: from properties to genome-wide predictions. Nat. Rev. Genet. 2014, 15:272-286.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 272-286
-
-
Shlyueva, D.1
Stampfel, G.2
Stark, A.3
-
154
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A., Bejerano G., Pedersen J.S., Hinrichs A.S., Hou M., Rosenbloom K., Clawson H., Spieth J., Hillier L.W., Richards S., et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 2005, 15:1034-1050.
-
(2005)
Genome Res.
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
155
-
-
84893518867
-
Olig1 function is required to repress dlx1/2 and interneuron production in Mammalian brain
-
Silbereis J.C., Nobuta H., Tsai H.-H., Heine V.M., McKinsey G.L., Meijer D.H., Howard M.A., Petryniak M.A., Potter G.B., Alberta J.A., et al. Olig1 function is required to repress dlx1/2 and interneuron production in Mammalian brain. Neuron 2014, 81:574-587.
-
(2014)
Neuron
, vol.81
, pp. 574-587
-
-
Silbereis, J.C.1
Nobuta, H.2
Tsai, H.-H.3
Heine, V.M.4
McKinsey, G.L.5
Meijer, D.H.6
Howard, M.A.7
Petryniak, M.A.8
Potter, G.B.9
Alberta, J.A.10
-
156
-
-
84883457107
-
Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model
-
Smith R.P., Taher L., Patwardhan R.P., Kim M.J., Inoue F., Shendure J., Ovcharenko I., Ahituv N. Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model. Nat. Genet. 2013, 45:1021-1028.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1021-1028
-
-
Smith, R.P.1
Taher, L.2
Patwardhan, R.P.3
Kim, M.J.4
Inoue, F.5
Shendure, J.6
Ovcharenko, I.7
Ahituv, N.8
-
157
-
-
13844318521
-
Control of globin gene expression during development and erythroid differentiation
-
Stamatoyannopoulos G. Control of globin gene expression during development and erythroid differentiation. Exp. Hematol. 2005, 33:259-271.
-
(2005)
Exp. Hematol.
, vol.33
, pp. 259-271
-
-
Stamatoyannopoulos, G.1
-
158
-
-
84865121188
-
An encyclopedia of mouse DNA elements (Mouse ENCODE)
-
Mouse ENCODE Consortium
-
Stamatoyannopoulos J.A., Snyder M., Hardison R., Ren B., Gingeras T., Gilbert D.M., Groudine M., Bender M., Kaul R., Canfield T., et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol. 2012, 13:418. Mouse ENCODE Consortium.
-
(2012)
Genome Biol.
, vol.13
, pp. 418
-
-
Stamatoyannopoulos, J.A.1
Snyder, M.2
Hardison, R.3
Ren, B.4
Gingeras, T.5
Gilbert, D.M.6
Groudine, M.7
Bender, M.8
Kaul, R.9
Canfield, T.10
-
159
-
-
84919458532
-
NPAS1 represses the generation of specific subtypes of cortical interneurons
-
Stanco A., Pla R., Vogt D., Chen Y., Mandal S., Walker J., Hunt R.F., Lindtner S., Erdman C., Pieper A.A., et al. NPAS1 represses the generation of specific subtypes of cortical interneurons. Neuron 2014, 84:940-943.
-
(2014)
Neuron
, vol.84
, pp. 940-943
-
-
Stanco, A.1
Pla, R.2
Vogt, D.3
Chen, Y.4
Mandal, S.5
Walker, J.6
Hunt, R.F.7
Lindtner, S.8
Erdman, C.9
Pieper, A.A.10
-
160
-
-
84881141882
-
Cooperativity and rapid evolution of cobound transcription factors in closely related mammals
-
Stefflova K., Thybert D., Wilson M.D., Streeter I., Aleksic J., Karagianni P., Brazma A., Adams D.J., Talianidis I., Marioni J.C., et al. Cooperativity and rapid evolution of cobound transcription factors in closely related mammals. Cell 2013, 154:530-540.
-
(2013)
Cell
, vol.154
, pp. 530-540
-
-
Stefflova, K.1
Thybert, D.2
Wilson, M.D.3
Streeter, I.4
Aleksic, J.5
Karagianni, P.6
Brazma, A.7
Adams, D.J.8
Talianidis, I.9
Marioni, J.C.10
-
161
-
-
84882766972
-
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes
-
Stergachis A.B., Neph S., Reynolds A., Humbert R., Miller B., Paige S.L., Vernot B., Cheng J.B., Thurman R.E., Sandstrom R., et al. Developmental fate and cellular maturity encoded in human regulatory DNA landscapes. Cell 2013, 154:888-903.
-
(2013)
Cell
, vol.154
, pp. 888-903
-
-
Stergachis, A.B.1
Neph, S.2
Reynolds, A.3
Humbert, R.4
Miller, B.5
Paige, S.L.6
Vernot, B.7
Cheng, J.B.8
Thurman, R.E.9
Sandstrom, R.10
-
162
-
-
77956193793
-
The same enhancer regulates the earliest Emx2 expression in caudal forebrain primordium, subsequent expression in dorsal telencephalon and later expression in the cortical ventricular zone
-
Suda Y., Kokura K., Kimura J., Kajikawa E., Inoue F., Aizawa S. The same enhancer regulates the earliest Emx2 expression in caudal forebrain primordium, subsequent expression in dorsal telencephalon and later expression in the cortical ventricular zone. Development 2010, 137:2939-2949.
-
(2010)
Development
, vol.137
, pp. 2939-2949
-
-
Suda, Y.1
Kokura, K.2
Kimura, J.3
Kajikawa, E.4
Inoue, F.5
Aizawa, S.6
-
163
-
-
0032841612
-
Loss of Nkx2.1 homeobox gene function results in a ventral to dorsal molecular respecification within the basal telencephalon: evidence for a transformation of the pallidum into the striatum
-
Sussel L., Marin O., Kimura S., Rubenstein J.L. Loss of Nkx2.1 homeobox gene function results in a ventral to dorsal molecular respecification within the basal telencephalon: evidence for a transformation of the pallidum into the striatum. Development 1999, 126:3359-3370.
-
(1999)
Development
, vol.126
, pp. 3359-3370
-
-
Sussel, L.1
Marin, O.2
Kimura, S.3
Rubenstein, J.L.4
-
164
-
-
84895794723
-
Discover context-specific combinatorial transcription factor interactions by integrating diverse ChIP-Seq data sets
-
e24-e24
-
Teng L., He B., Gao P., Gao L., Tan K. Discover context-specific combinatorial transcription factor interactions by integrating diverse ChIP-Seq data sets. Nucleic Acids Res. 2014, 42. e24-e24.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
Teng, L.1
He, B.2
Gao, P.3
Gao, L.4
Tan, K.5
-
165
-
-
0036333793
-
Wnt and Bmp signalling cooperatively regulate graded Emx2 expression in the dorsal telencephalon
-
Theil T., Aydin S., Koch S., Grotewold L., Rüther U. Wnt and Bmp signalling cooperatively regulate graded Emx2 expression in the dorsal telencephalon. Development 2002, 129:3045-3054.
-
(2002)
Development
, vol.129
, pp. 3045-3054
-
-
Theil, T.1
Aydin, S.2
Koch, S.3
Grotewold, L.4
Rüther, U.5
-
166
-
-
84904385099
-
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain
-
Thompson C.L., Ng L., Menon V., Martinez S., Lee C.-K., Glattfelder K., Sunkin S.M., Henry A., Lau C., Dang C., et al. A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron 2014, 83:309-323.
-
(2014)
Neuron
, vol.83
, pp. 309-323
-
-
Thompson, C.L.1
Ng, L.2
Menon, V.3
Martinez, S.4
Lee, C.-K.5
Glattfelder, K.6
Sunkin, S.M.7
Henry, A.8
Lau, C.9
Dang, C.10
-
167
-
-
79953057217
-
Duplications of the neuropeptide receptor gene VIPR2 confer significant risk for schizophrenia
-
Vacic V., McCarthy S., Malhotra D., Murray F., Chou H.-H., Peoples A., Makarov V., Yoon S., Bhandari A., Corominas R., et al. Duplications of the neuropeptide receptor gene VIPR2 confer significant risk for schizophrenia. Nature 2011, 471:499-503.
-
(2011)
Nature
, vol.471
, pp. 499-503
-
-
Vacic, V.1
McCarthy, S.2
Malhotra, D.3
Murray, F.4
Chou, H.-H.5
Peoples, A.6
Makarov, V.7
Yoon, S.8
Bhandari, A.9
Corominas, R.10
-
168
-
-
84872193597
-
Directed migration of cortical interneurons depends on the cell-autonomous action of Sip1
-
van den Berghe V., Stappers E., Vandesande B., Dimidschstein J., Kroes R., Francis A., Conidi A., Lesage F., Dries R., Cazzola S., et al. Directed migration of cortical interneurons depends on the cell-autonomous action of Sip1. Neuron 2013, 77:70-82.
-
(2013)
Neuron
, vol.77
, pp. 70-82
-
-
van den Berghe, V.1
Stappers, E.2
Vandesande, B.3
Dimidschstein, J.4
Kroes, R.5
Francis, A.6
Conidi, A.7
Lesage, F.8
Dries, R.9
Cazzola, S.10
-
170
-
-
0025905795
-
Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome
-
Verkerk A.J., Pieretti M., Sutcliffe J.S., Fu Y.H., Kuhl D.P., Pizzuti A., Reiner O., Richards S., Victoria M.F., Zhang F.P., et al. Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome. Cell 1991, 65:905-914.
-
(1991)
Cell
, vol.65
, pp. 905-914
-
-
Verkerk, A.J.1
Pieretti, M.2
Sutcliffe, J.S.3
Fu, Y.H.4
Kuhl, D.P.5
Pizzuti, A.6
Reiner, O.7
Richards, S.8
Victoria, M.F.9
Zhang, F.P.10
-
171
-
-
84899453734
-
Evolution of transcription factor binding in metazoans - mechanisms and functional implications
-
Villar D., Flicek P., Odom D.T. Evolution of transcription factor binding in metazoans - mechanisms and functional implications. Nat. Rev. Genet. 2014, 15:221-233.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 221-233
-
-
Villar, D.1
Flicek, P.2
Odom, D.T.3
-
172
-
-
33846112470
-
VISTA Enhancer Browser-a database of tissue-specific human enhancers
-
Visel A., Minovitsky S., Dubchak I., Pennacchio L.A. VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Res. 2007, 35:D88-D92.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D88-D92
-
-
Visel, A.1
Minovitsky, S.2
Dubchak, I.3
Pennacchio, L.A.4
-
173
-
-
67349255443
-
Functional autonomy of distant-acting human enhancers
-
Visel A., Akiyama J.A., Shoukry M., Afzal V., Rubin E.M., Pennacchio L.A. Functional autonomy of distant-acting human enhancers. Genomics 2009, 93:509-513.
-
(2009)
Genomics
, vol.93
, pp. 509-513
-
-
Visel, A.1
Akiyama, J.A.2
Shoukry, M.3
Afzal, V.4
Rubin, E.M.5
Pennacchio, L.A.6
-
174
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel A., Blow M.J., Li Z., Zhang T., Akiyama J.A., Holt A., Plajzer-Frick I., Shoukry M., Wright C., Chen F., et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 2009, 457:854-858.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
175
-
-
84874118170
-
A high-resolution enhancer atlas of the developing telencephalon
-
Visel A., Taher L., Girgis H., May D., Golonzhka O., Hoch R.V., McKinsey G.L., Pattabiraman K., Silberberg S.N., Blow M.J., et al. A high-resolution enhancer atlas of the developing telencephalon. Cell 2013, 152:895-908.
-
(2013)
Cell
, vol.152
, pp. 895-908
-
-
Visel, A.1
Taher, L.2
Girgis, H.3
May, D.4
Golonzhka, O.5
Hoch, R.V.6
McKinsey, G.L.7
Pattabiraman, K.8
Silberberg, S.N.9
Blow, M.J.10
-
176
-
-
84898678765
-
Lhx6 directly regulates Arx and CXCR7 to determine cortical interneuron fate and laminar position
-
Vogt D., Hunt R.F., Mandal S., Sandberg M., Silberberg S.N., Nagasawa T., Yang Z., Baraban S.C., Rubenstein J.L.R. Lhx6 directly regulates Arx and CXCR7 to determine cortical interneuron fate and laminar position. Neuron 2014, 82:350-364.
-
(2014)
Neuron
, vol.82
, pp. 350-364
-
-
Vogt, D.1
Hunt, R.F.2
Mandal, S.3
Sandberg, M.4
Silberberg, S.N.5
Nagasawa, T.6
Yang, Z.7
Baraban, S.C.8
Rubenstein, J.L.R.9
-
177
-
-
79959262465
-
Transcriptomic analysis of autistic brain reveals convergent molecular pathology
-
Voineagu I., Wang X., Johnston P., Lowe J.K., Tian Y., Horvath S., Mill J., Cantor R.M., Blencowe B.J., Geschwind D.H. Transcriptomic analysis of autistic brain reveals convergent molecular pathology. Nature 2011, 474:380-384.
-
(2011)
Nature
, vol.474
, pp. 380-384
-
-
Voineagu, I.1
Wang, X.2
Johnston, P.3
Lowe, J.K.4
Tian, Y.5
Horvath, S.6
Mill, J.7
Cantor, R.M.8
Blencowe, B.J.9
Geschwind, D.H.10
-
178
-
-
32344447255
-
The zinc finger transcription factor Sp8 regulates the generation and diversity of olfactory bulb interneurons
-
Waclaw R.R., Allen Z.J., Bell S.M., Erdélyi F., Szabó G., Potter S.S., Campbell K. The zinc finger transcription factor Sp8 regulates the generation and diversity of olfactory bulb interneurons. Neuron 2006, 49:503-516.
-
(2006)
Neuron
, vol.49
, pp. 503-516
-
-
Waclaw, R.R.1
Allen, Z.J.2
Bell, S.M.3
Erdélyi, F.4
Szabó, G.5
Potter, S.S.6
Campbell, K.7
-
179
-
-
77952589663
-
Developmental origin of the neuronal subtypes that comprise the amygdalar fear circuit in the mouse
-
Waclaw R.R., Ehrman L.A., Pierani A., Campbell K. Developmental origin of the neuronal subtypes that comprise the amygdalar fear circuit in the mouse. J.Neurosci. 2010, 30:6944-6953.
-
(2010)
J.Neurosci.
, vol.30
, pp. 6944-6953
-
-
Waclaw, R.R.1
Ehrman, L.A.2
Pierani, A.3
Campbell, K.4
-
180
-
-
77950989444
-
Dlx5 and Dlx6 regulate the development of parvalbumin-expressing cortical interneurons
-
Wang Y., Dye C.A., Sohal V., Long J.E., Estrada R.C., Roztocil T., Lufkin T., Deisseroth K., Baraban S.C., Rubenstein J.L.R. Dlx5 and Dlx6 regulate the development of parvalbumin-expressing cortical interneurons. J.Neurosci. 2010, 30:5334-5345.
-
(2010)
J.Neurosci.
, vol.30
, pp. 5334-5345
-
-
Wang, Y.1
Dye, C.A.2
Sohal, V.3
Long, J.E.4
Estrada, R.C.5
Roztocil, T.6
Lufkin, T.7
Deisseroth, K.8
Baraban, S.C.9
Rubenstein, J.L.R.10
-
181
-
-
79959767018
-
Dlx6 regulates molecular properties of the striatum and central nucleus of the amygdala
-
Wang B., Lufkin T., Rubenstein J.L.R. Dlx6 regulates molecular properties of the striatum and central nucleus of the amygdala. J.Comp. Neurol. 2011, 519:2320-2334.
-
(2011)
J.Comp. Neurol.
, vol.519
, pp. 2320-2334
-
-
Wang, B.1
Lufkin, T.2
Rubenstein, J.L.R.3
-
182
-
-
84875302751
-
Loss of Gsx1 and Gsx2 function rescues distinct phenotypes in Dlx1/2 mutants
-
Wang B., Long J.E., Flandin P., Pla R., Waclaw R.R., Campbell K., Rubenstein J.L.R. Loss of Gsx1 and Gsx2 function rescues distinct phenotypes in Dlx1/2 mutants. J.Comp. Neurol. 2013, 521:1561-1584.
-
(2013)
J.Comp. Neurol.
, vol.521
, pp. 1561-1584
-
-
Wang, B.1
Long, J.E.2
Flandin, P.3
Pla, R.4
Waclaw, R.R.5
Campbell, K.6
Rubenstein, J.L.R.7
-
183
-
-
84880362638
-
Massively parallel invivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks
-
White M.A., Myers C.A., Corbo J.C., Cohen B.A. Massively parallel invivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks. Proc. Natl. Acad. Sci. USA 2013, 110:11952-11957.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 11952-11957
-
-
White, M.A.1
Myers, C.A.2
Corbo, J.C.3
Cohen, B.A.4
-
184
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte W.A., Orlando D.A., Hnisz D., Abraham B.J., Lin C.Y., Kagey M.H., Rahl P.B., Lee T.I., Young R.A. Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 2013, 153:307-319.
-
(2013)
Cell
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
-
185
-
-
84889583293
-
Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism
-
Willsey A.J., Sanders S.J., Li M., Dong S., Tebbenkamp A.T., Muhle R.A., Reilly S.K., Lin L., Fertuzinhos S., Miller J.A., et al. Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell 2013, 155:997-1007.
-
(2013)
Cell
, vol.155
, pp. 997-1007
-
-
Willsey, A.J.1
Sanders, S.J.2
Li, M.3
Dong, S.4
Tebbenkamp, A.T.5
Muhle, R.A.6
Reilly, S.K.7
Lin, L.8
Fertuzinhos, S.9
Miller, J.A.10
-
186
-
-
0036827008
-
Modulation of the notch signaling by Mash1 and Dlx1/2 regulates sequential specification and differentiation of progenitor cell types in the subcortical telencephalon
-
Yun K., Fischman S., Johnson J., Hrabě de Angelis M., Weinmaster G., Rubenstein J.L.R. Modulation of the notch signaling by Mash1 and Dlx1/2 regulates sequential specification and differentiation of progenitor cell types in the subcortical telencephalon. Development 2002, 129:5029-5040.
-
(2002)
Development
, vol.129
, pp. 5029-5040
-
-
Yun, K.1
Fischman, S.2
Johnson, J.3
Hrabě de Angelis, M.4
Weinmaster, G.5
Rubenstein, J.L.R.6
-
187
-
-
0342635450
-
A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain
-
Zerucha T., Stühmer T., Hatch G., Park B.K., Long Q., Yu G., Gambarotta A., Schultz J.R., Rubenstein J.L., Ekker M. A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain. J.Neurosci. 2000, 20:709-721.
-
(2000)
J.Neurosci.
, vol.20
, pp. 709-721
-
-
Zerucha, T.1
Stühmer, T.2
Hatch, G.3
Park, B.K.4
Long, Q.5
Yu, G.6
Gambarotta, A.7
Schultz, J.R.8
Rubenstein, J.L.9
Ekker, M.10
-
188
-
-
84890432056
-
Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations
-
Zhang Y., Wong C.-H., Birnbaum R.Y., Li G., Favaro R., Ngan C.Y., Lim J., Tai E., Poh H.M., Wong E., et al. Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations. Nature 2013, 504:306-310.
-
(2013)
Nature
, vol.504
, pp. 306-310
-
-
Zhang, Y.1
Wong, C.-H.2
Birnbaum, R.Y.3
Li, G.4
Favaro, R.5
Ngan, C.Y.6
Lim, J.7
Tai, E.8
Poh, H.M.9
Wong, E.10
-
189
-
-
0042808472
-
The LIM-homeobox gene Lhx8 is required for the development of many cholinergic neurons in the mouse forebrain
-
Zhao Y., Marín O., Hermesz E., Powell A., Flames N., Palkovits M., Rubenstein J.L.R., Westphal H. The LIM-homeobox gene Lhx8 is required for the development of many cholinergic neurons in the mouse forebrain. Proc. Natl. Acad. Sci. USA 2003, 100:9005-9010.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9005-9010
-
-
Zhao, Y.1
Marín, O.2
Hermesz, E.3
Powell, A.4
Flames, N.5
Palkovits, M.6
Rubenstein, J.L.R.7
Westphal, H.8
-
190
-
-
50349091132
-
Distinct molecular pathways for development of telencephalic interneuron subtypes revealed through analysis of Lhx6 mutants
-
Zhao Y., Flandin P., Long J.E., Cuesta M.D., Westphal H., Rubenstein J.L.R. Distinct molecular pathways for development of telencephalic interneuron subtypes revealed through analysis of Lhx6 mutants. J.Comp. Neurol. 2008, 510:79-99.
-
(2008)
J.Comp. Neurol.
, vol.510
, pp. 79-99
-
-
Zhao, Y.1
Flandin, P.2
Long, J.E.3
Cuesta, M.D.4
Westphal, H.5
Rubenstein, J.L.R.6
-
191
-
-
84888308260
-
Ldb1 is essential for development of Nkx2.1 lineage derived GABAergic and cholinergic neurons in the telencephalon
-
Zhao Y., Flandin P., Vogt D., Blood A., Hermesz E., Westphal H., Rubenstein J.L.R. Ldb1 is essential for development of Nkx2.1 lineage derived GABAergic and cholinergic neurons in the telencephalon. Dev. Biol. 2014, 385:94-106.
-
(2014)
Dev. Biol.
, vol.385
, pp. 94-106
-
-
Zhao, Y.1
Flandin, P.2
Vogt, D.3
Blood, A.4
Hermesz, E.5
Westphal, H.6
Rubenstein, J.L.R.7
-
192
-
-
2342631844
-
Identification of a direct Dlx homeodomain target in the developing mouse forebrain and retina by optimization of chromatin immunoprecipitation
-
Zhou Q.-P., Le T.N., Qiu X., Spencer V., de Melo J., Du G., Plews M., Fonseca M., Sun J.M., Davie J.R., Eisenstat D.D. Identification of a direct Dlx homeodomain target in the developing mouse forebrain and retina by optimization of chromatin immunoprecipitation. Nucleic Acids Res. 2004, 32:884-892.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 884-892
-
-
Zhou, Q.-P.1
Le, T.N.2
Qiu, X.3
Spencer, V.4
de Melo, J.5
Du, G.6
Plews, M.7
Fonseca, M.8
Sun, J.M.9
Davie, J.R.10
Eisenstat, D.D.11
-
193
-
-
84873310426
-
Genome-wide chromatin state transitions associated with developmental and environmental cues
-
Zhu J., Adli M., Zou J.Y., Verstappen G., Coyne M., Zhang X., Durham T., Miri M., Deshpande V., De Jager P.L., et al. Genome-wide chromatin state transitions associated with developmental and environmental cues. Cell 2013, 152:642-654.
-
(2013)
Cell
, vol.152
, pp. 642-654
-
-
Zhu, J.1
Adli, M.2
Zou, J.Y.3
Verstappen, G.4
Coyne, M.5
Zhang, X.6
Durham, T.7
Miri, M.8
Deshpande, V.9
De Jager, P.L.10
|