-
1
-
-
79551655285
-
Functional and mechanistic diversity of distal transcription enhancers
-
Bulger, M. & Groudine, M. Functional and mechanistic diversity of distal transcription enhancers. Cell 144, 327-339 (2011
-
(2011)
Cell
, vol.144
, pp. 327-339
-
-
Bulger, M.1
Groudine, M.2
-
2
-
-
70249088327
-
Genomic views of distant-Acting enhancers
-
Visel, A., Rubin, E.M. & Pennacchio, L.A. Genomic views of distant-Acting enhancers. Nature 461, 199-205 (2009
-
(2009)
Nature
, vol.461
, pp. 199-205
-
-
Visel, A.1
Rubin, E.M.2
Pennacchio, L.A.3
-
4
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-Type-specific gene expression
-
Heintzman, N.D. et al. Histone modifications at human enhancers reflect global cell-Type-specific gene expression. Nature 459, 108-112 (2009
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
-
5
-
-
38649099445
-
High-resolution mapping and characterization of open chromatin across the genome
-
Boyle, A.P. et al. High-resolution mapping and characterization of open chromatin across the genome. Cell 132, 311-322 (2008
-
(2008)
Cell
, vol.132
, pp. 311-322
-
-
Boyle, A.P.1
-
6
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst, J. et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473, 43-49 (2011
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
-
7
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Encode Project Consortium
-
Encode Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
8
-
-
84865822182
-
Systematic localization of common disease-Associated variation in regulatory DNA
-
Maurano, M.T. et al. Systematic localization of common disease-Associated variation in regulatory DNA. Science 337, 1190-1195 (2012
-
(2012)
Science
, vol.337
, pp. 1190-1195
-
-
Maurano, M.T.1
-
9
-
-
84876836223
-
Modification of enhancer chromatin: What, how, and why?
-
Calo, E. & Wysocka, J. Modification of enhancer chromatin: What, how, and why? Mol. Cell 49, 825-837 (2013
-
(2013)
Mol. Cell
, vol.49
, pp. 825-837
-
-
Calo, E.1
Wysocka, J.2
-
10
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler, M.B. et al. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480, 490-495 (2011
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
-
11
-
-
84873707124
-
In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures
-
Ng, J-H. et al. In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures. Dev. Cell 24, 324-333 (2013
-
(2013)
Dev. Cell
, vol.24
, pp. 324-333
-
-
Ng, J.-H.1
-
12
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M.P. et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 107, 21931-21936 (2010
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
-
13
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias, A. et al. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470, 279-283 (2011
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
-
14
-
-
11144332565
-
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
-
Shi, Y. et al. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119, 941-953 (2004
-
(2004)
Cell
, vol.119
, pp. 941-953
-
-
Shi, Y.1
-
15
-
-
72149110399
-
Breaking the code of DNA binding specificity of TAL-Type III effectors
-
Boch, J. et al. Breaking the code of DNA binding specificity of TAL-Type III effectors. Science 326, 1509-1512 (2009
-
(2009)
Science
, vol.326
, pp. 1509-1512
-
-
Boch, J.1
-
16
-
-
72149090954
-
A simple cipher governs DNA recognition by TAL effectors
-
Moscou, M.J. & Bogdanove, A.J. A simple cipher governs DNA recognition by TAL effectors. Science 326, 1501 (2009
-
(2009)
Science
, vol.326
, pp. 1501
-
-
Moscou, M.J.1
Bogdanove, A.J.2
-
17
-
-
84865513069
-
TALE nucleases: Tailored genome engineering made easy
-
Mussolino, C. & Cathomen, T. TALE nucleases: Tailored genome engineering made easy. Curr. Opin. Biotechnol. 23, 644-650 (2012
-
(2012)
Curr. Opin. Biotechnol
, vol.23
, pp. 644-650
-
-
Mussolino, C.1
Cathomen, T.2
-
18
-
-
84871519181
-
Talens: A widely applicable technology for targeted genome editing
-
Joung, J.K. & Sander, J.D. TALENs: A widely applicable technology for targeted genome editing. Nat. Rev. Mol. Cell Biol. 14, 49-55 (2013
-
(2013)
Nat. Rev. Mol. Cell Biol
, vol.14
, pp. 49-55
-
-
Joung, J.K.1
Sander, J.D.2
-
19
-
-
77949402393
-
Genomic approaches uncover increasing complexities in the regulatory landscape at the human SCL (TAL1) locus
-
Dhami, P. et al. Genomic approaches uncover increasing complexities in the regulatory landscape at the human SCL (TAL1) locus. PLoS ONE 5, e9059 (2010
-
(2010)
PLoS ONE
, vol.5
-
-
Dhami, P.1
-
20
-
-
79751487297
-
Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription
-
Zhang, F. et al. Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nat. Biotechnol. 29, 149-153 (2011
-
(2011)
Nat. Biotechnol
, vol.29
, pp. 149-153
-
-
Zhang, F.1
-
21
-
-
33747808580
-
Functional interplay between histone demethylase and deacetylase enzymes
-
Lee, M.G. et al. Functional interplay between histone demethylase and deacetylase enzymes. Mol. Cell. Biol. 26, 6395-6402 (2006
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 6395-6402
-
-
Lee, M.G.1
-
22
-
-
25144519737
-
An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation
-
10.1038/nature04021
-
Lee, M.G., Wynder, C., Cooch, N. & Shiekhattar, R. An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation. Nature 10.1038/nature04021 (2005
-
(2005)
Nature
-
-
Lee, M.G.1
Wynder, C.2
Cooch, N.3
Shiekhattar, R.4
-
23
-
-
84856962477
-
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
-
Whyte, W.A. et al. Enhancer decommissioning by LSD1 during embryonic stem cell differentiation. Nature 482, 221-225 (2012
-
(2012)
Nature
, vol.482
, pp. 221-225
-
-
Whyte, W.A.1
-
24
-
-
84860747716
-
FLASH assembly of TALENs for high-Throughput genome editing
-
Reyon, D. et al. FLASH assembly of TALENs for high-Throughput genome editing. Nat. Biotechnol. 30, 460-465 (2012
-
(2012)
Nat. Biotechnol
, vol.30
, pp. 460-465
-
-
Reyon, D.1
-
25
-
-
77952727403
-
Noncanonical transcript forms in yeast and their regulation during environmental stress
-
Yoon, O.K. & Brem, R.B. Noncanonical transcript forms in yeast and their regulation during environmental stress. RNA 16, 1256-1267 (2010
-
(2010)
RNA
, vol.16
, pp. 1256-1267
-
-
Yoon, O.K.1
Brem, R.B.2
-
26
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
27
-
-
84882976110
-
Optical control of mammalian endogenous transcription and epigenetic states
-
Konermann, S. et al. Optical control of mammalian endogenous transcription and epigenetic states. Nature 500, 472-476 (2013
-
(2013)
Nature
, vol.500
, pp. 472-476
-
-
Konermann, S.1
-
28
-
-
84874627289
-
Robust, synergistic regulation of human gene expression using TALE activators
-
Maeder, M.L. et al. Robust, synergistic regulation of human gene expression using TALE activators. Nat. Methods 10, 243-245 (2013
-
(2013)
Nat. Methods
, vol.10
, pp. 243-245
-
-
Maeder, M.L.1
-
29
-
-
55449105221
-
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
-
Ku, M. et al. Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet. 4, e1000242 (2008
-
(2008)
PLoS Genet
, vol.4
-
-
Ku, M.1
-
30
-
-
79960398002
-
False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions
-
Pickrell, J.K., Gaffney, D.J., Gilad, Y. & Pritchard, J.K. False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions. Bioinformatics 27, 2144-2146 (2011
-
(2011)
Bioinformatics
, vol.27
, pp. 2144-2146
-
-
Pickrell, J.K.1
Gaffney, D.J.2
Gilad, Y.3
Pritchard, J.K.4
-
31
-
-
84455200582
-
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
-
Ram, O. et al. Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell 147, 1628-1639 (2011
-
(2011)
Cell
, vol.147
, pp. 1628-1639
-
-
Ram, O.1
|