-
1
-
-
33845311536
-
Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping
-
Walhout, A.J. (2006) Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping. Genome Res., 16, 1445-1454.
-
(2006)
Genome Res.
, vol.16
, pp. 1445-1454
-
-
Walhout, A.J.1
-
2
-
-
0030030902
-
The eve stripe 2 enhancer employs multiple modes of transcriptional synergy
-
Arnosti, D.N., Barolo, S., Levine, M. and Small, S. (1996) The eve stripe 2 enhancer employs multiple modes of transcriptional synergy. Development, 122, 205-214.
-
(1996)
Development
, vol.122
, pp. 205-214
-
-
Arnosti, D.N.1
Barolo, S.2
Levine, M.3
Small, S.4
-
3
-
-
0035094449
-
Cis-regulatory logic in the endo16 gene: Switching from a specification to a differentiation mode of control
-
Yuh, C.H., Bolouri, H. and Davidson, E.H. (2001) Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control. Development, 128, 617-629.
-
(2001)
Development
, vol.128
, pp. 617-629
-
-
Yuh, C.H.1
Bolouri, H.2
Davidson, E.H.3
-
4
-
-
0041534427
-
Analysis of a key regulatory region upstream of the Myf5 gene reveals multiple phases of myogenesis, orchestrated at each site by a combination of elements dispersed throughout the locus
-
Hadchouel, J., Carvajal, J.J., Daubas, P., Bajard, L., Chang, T., Rocancourt, D., Cox, D., Summerbell, D., Tajbakhsh, S., Rigby, P.W. et al. (2003) Analysis of a key regulatory region upstream of the Myf5 gene reveals multiple phases of myogenesis, orchestrated at each site by a combination of elements dispersed throughout the locus. Development, 130, 3415-3426.
-
(2003)
Development
, vol.130
, pp. 3415-3426
-
-
Hadchouel, J.1
Carvajal, J.J.2
Daubas, P.3
Bajard, L.4
Chang, T.5
Rocancourt, D.6
Cox, D.7
Summerbell, D.8
Tajbakhsh, S.9
Rigby, P.W.10
-
5
-
-
34250017968
-
An atomic model of the interferon-beta enhanceosome
-
Panne, D., Maniatis, T. and Harrison, S.C. (2007) An atomic model of the interferon-beta enhanceosome. Cell, 129, 1111-1123.
-
(2007)
Cell
, vol.129
, pp. 1111-1123
-
-
Panne, D.1
Maniatis, T.2
Harrison, S.C.3
-
6
-
-
84871688165
-
Characterization of enhancer function from genome-wide analyses
-
Maston, G.A., Landt, S.G., Snyder, M. and Green, M.R. (2012) Characterization of enhancer function from genome-wide analyses. Annu. Rev. Genomics. Hum. Genet., 13, 29-57.
-
(2012)
Annu. Rev. Genomics. Hum. Genet.
, vol.13
, pp. 29-57
-
-
Maston, G.A.1
Landt, S.G.2
Snyder, M.3
Green, M.R.4
-
7
-
-
79952681078
-
Evolution of gene regulatory networks controlling body plan development
-
Peter, I.S. and Davidson, E.H. (2011) Evolution of gene regulatory networks controlling body plan development. Cell, 144, 970-985.
-
(2011)
Cell
, vol.144
, pp. 970-985
-
-
Peter, I.S.1
Davidson, E.H.2
-
8
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
Chen, X., Xu, H., Yuan, P., Fang, F., Huss, M., Vega, V.B., Wong, E., Orlov, Y.L., Zhang, W., Jiang, J. et al. (2008) Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell, 133, 1106-1117.
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
-
9
-
-
77957348625
-
Combinatorial transcriptional control in blood stem/progenitor cells: Genome-wide analysis of ten major transcriptional regulators
-
Wilson, N.K., Foster, S.D., Wang, X., Knezevic, K., Schutte, J., Kaimakis, P., Chilarska, P.M., Kinston, S., Ouwehand, W.H., Dzierzak, E. et al. (2010) Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. Cell Stem Cell, 7, 532-544.
-
(2010)
Cell Stem Cell
, vol.7
, pp. 532-544
-
-
Wilson, N.K.1
Foster, S.D.2
Wang, X.3
Knezevic, K.4
Schutte, J.5
Kaimakis, P.6
Chilarska, P.M.7
Kinston, S.8
Ouwehand, W.H.9
Dzierzak, E.10
-
10
-
-
76149089221
-
The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation
-
Soler, E., Andrieu-Soler, C., de Boer, E., Bryne, J.C., Thongjuea, S., Stadhouders, R., Palstra, R.J., Stevens, M., Kockx, C., van Ijcken, W. et al. (2010) The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation. Genes Dev., 24, 277-289.
-
(2010)
Genes Dev.
, vol.24
, pp. 277-289
-
-
Soler, E.1
Andrieu-Soler, C.2
De Boer, E.3
Bryne, J.C.4
Thongjuea, S.5
Stadhouders, R.6
Palstra, R.J.7
Stevens, M.8
Kockx, C.9
Van Ijcken, W.10
-
11
-
-
79953046943
-
A cis-regulatory map of the Drosophila genome
-
Negre, N., Brown, C.D., Ma, L., Bristow, C.A., Miller, S.W., Wagner, U., Kheradpour, P., Eaton, M.L., Loriaux, P., Sealfon, R. et al. (2011) A cis-regulatory map of the Drosophila genome. Nature, 471, 527-531.
-
(2011)
Nature
, vol.471
, pp. 527-531
-
-
Negre, N.1
Brown, C.D.2
Ma, L.3
Bristow, C.A.4
Miller, S.W.5
Wagner, U.6
Kheradpour, P.7
Eaton, M.L.8
Loriaux, P.9
Sealfon, R.10
-
12
-
-
78650410139
-
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
-
Gerstein, M.B., Lu, Z.J., Van Nostrand, E.L., Cheng, C., Arshinoff, B.I., Liu, T., Yip, K.Y., Robilotto, R., Rechtsteiner, A., Ikegami, K. et al. (2010) Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science, 330, 1775-1787.
-
(2010)
Science
, vol.330
, pp. 1775-1787
-
-
Gerstein, M.B.1
Lu, Z.J.2
Van Nostrand, E.L.3
Cheng, C.4
Arshinoff, B.I.5
Liu, T.6
Yip, K.Y.7
Robilotto, R.8
Rechtsteiner, A.9
Ikegami, K.10
-
13
-
-
77649299348
-
An atlas of combinatorial transcriptional regulation in mouse and man
-
Ravasi, T., Suzuki, H., Cannistraci, C.V., Katayama, S., Bajic, V.B., Tan, K., Akalin, A., Schmeier, S., Kanamori-Katayama, M., Bertin, N. et al. (2010) An atlas of combinatorial transcriptional regulation in mouse and man. Cell, 140, 744-752.
-
(2010)
Cell
, vol.140
, pp. 744-752
-
-
Ravasi, T.1
Suzuki, H.2
Cannistraci, C.V.3
Katayama, S.4
Bajic, V.B.5
Tan, K.6
Akalin, A.7
Schmeier, S.8
Kanamori-Katayama, M.9
Bertin, N.10
-
14
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman, N.D., Stuart, R.K., Hon, G., Fu, Y., Ching, C.W., Hawkins, R.D., Barrera, L.O., Van Calcar, S., Qu, C., Ching, K.A. et al. (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet., 39, 311-318.
-
(2007)
Nat. Genet.
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
-
15
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim, T.K., Hemberg, M., Gray, J.M., Costa, A.M., Bear, D.M., Wu, J., Harmin, D.A., Laptewicz, M., Barbara-Haley, K., Kuersten, S. et al. (2010) Widespread transcription at neuronal activity-regulated enhancers. Nature, 465, 182-187.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
-
16
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias, A., Bajpai, R., Swigut, T., Brugmann, S.A., Flynn, R.A. and Wysocka, J. (2010) A unique chromatin signature uncovers early developmental enhancers in humans. Nature, 470, 279-283.
-
(2010)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
17
-
-
0027621699
-
Mining association rules between sets of items in large datasets
-
Agrawal, R., Imielinski, T. and Swami, A. (1993) Mining association rules between sets of items in large datasets. In Proc. of ACM SIGMOD Conference on Management of Data, Washington, DC, pp. 207-216.
-
(1993)
Proc. of ACM SIGMOD Conference on Management of Data, Washington, DC
, pp. 207-216
-
-
Agrawal, R.1
Imielinski, T.2
Swami, A.3
-
18
-
-
77954204584
-
Discover regulatory DNA elements using chromatin signatures and artificial neural network
-
Firpi, H.A., Ucar, D. and Tan, K. (2010) Discover regulatory DNA elements using chromatin signatures and artificial neural network. Bioinformatics, 26, 1579-1586.
-
(2010)
Bioinformatics
, vol.26
, pp. 1579-1586
-
-
Firpi, H.A.1
Ucar, D.2
Tan, K.3
-
19
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y., Liu, T., Meyer, C.A., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nussbaum, C., Myers, R.M., Brown, M., Li, W. et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol., 9, R137.
-
(2008)
Genome Biol.
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nussbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
20
-
-
70350697587
-
Probabilistic frequent itemset mining in uncertain Databases
-
Bernecker, T., Kriegel, H., Renz, M. and Verhein, F. (2009) Probabilistic frequent itemset mining in uncertain Databases. In Proc. of ACM SIGKDD Conference on Knowledge Discovery and Data Mining, Paris, France, pp. 119-128.
-
(2009)
Proc. of ACM SIGKDD Conference on Knowledge Discovery and Data Mining, Paris, France
, pp. 119-128
-
-
Bernecker, T.1
Kriegel, H.2
Renz, M.3
Verhein, F.4
-
21
-
-
25144439604
-
-
Addison Wesley, Boston, MA
-
Tan, P., Steinbach, M. and Kumar, V. (2005) Introduction to Data Mining, 1st edn. Addison Wesley, Boston, MA.
-
(2005)
Introduction to Data Mining, 1st Edn
-
-
Tan, P.1
Steinbach, M.2
Kumar, V.3
-
22
-
-
38549158519
-
Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
-
Morgan, X.C., Ni, S., Miranker, D.P. and Iyer, V.R. (2007) Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining. BMC bioinformatics, 8, 445.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 445
-
-
Morgan, X.C.1
Ni, S.2
Miranker, D.P.3
Iyer, V.R.4
-
23
-
-
84863194378
-
Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection
-
Sun, H., Guns, T., Fierro, A.C., Thorrez, L., Nijssen, S. and Marchal, K. (2012) Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection. Nucleic Acids Res., 40, e90.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Sun, H.1
Guns, T.2
Fierro, A.C.3
Thorrez, L.4
Nijssen, S.5
Marchal, K.6
-
24
-
-
0023710206
-
Comparing the areas under two or more correlated receiver operating characteristic curves: A nonparametric approach
-
DeLong, E.R., DeLong, D.M. and Clarke-Pearson, D.L. (1988) Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. Biometrics, 44, 837-845.
-
(1988)
Biometrics
, vol.44
, pp. 837-845
-
-
Delong, E.R.1
Delong, D.M.2
Clarke-Pearson, D.L.3
-
25
-
-
84871688165
-
Characterization of enhancer function from genome-wide analyses
-
Maston, G.A., Landt, S.G., Snyder, M. and Green, M.R. (2012) Characterization of enhancer function from genome-wide analyses. Ann. Rev. Genomics Hum. Genet., 13, 29-57.
-
(2012)
Ann. Rev. Genomics Hum. Genet.
, vol.13
, pp. 29-57
-
-
Maston, G.A.1
Landt, S.G.2
Snyder, M.3
Green, M.R.4
-
26
-
-
0029617947
-
Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome
-
Thanos, D. and Maniatis, T. (1995) Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome. Cell, 83, 1091-1100.
-
(1995)
Cell
, vol.83
, pp. 1091-1100
-
-
Thanos, D.1
Maniatis, T.2
-
28
-
-
0347765651
-
Information display by transcriptional enhancers
-
Kulkarni, M.M. and Arnosti, D.N. (2003) Information display by transcriptional enhancers. Development, 130, 6569-6575.
-
(2003)
Development
, vol.130
, pp. 6569-6575
-
-
Kulkarni, M.M.1
Arnosti, D.N.2
-
29
-
-
77956495708
-
Transcriptional enhancers in animal development and evolution
-
Levine, M. (2010) Transcriptional enhancers in animal development and evolution. Curr. Biol., 20, R754-R763.
-
(2010)
Curr. Biol.
, vol.20
-
-
Levine, M.1
-
30
-
-
80055092183
-
Inferring transcription factor complexes from ChIP-seq data
-
Whitington, T., Frith, M.C., Johnson, J. and Bailey, T.L. (2011) Inferring transcription factor complexes from ChIP-seq data. Nucleic Acids Res., 39, e98.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Whitington, T.1
Frith, M.C.2
Johnson, J.3
Bailey, T.L.4
-
31
-
-
33646928347
-
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
-
Bejerano, G., Lowe, C.B., Ahituv, N., King, B., Siepel, A., Salama, S.R., Rubin, E.M., Kent, W.J. and Haussler, D. (2006) A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature, 441, 87-90.
-
(2006)
Nature
, vol.441
, pp. 87-90
-
-
Bejerano, G.1
Lowe, C.B.2
Ahituv, N.3
King, B.4
Siepel, A.5
Salama, S.R.6
Rubin, E.M.7
Kent, W.J.8
Haussler, D.9
-
32
-
-
35948981635
-
Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene
-
Santangelo, A.M., de Souza, F.S., Franchini, L.F., Bumaschny, V.F., Low, M.J. and Rubinstein, M. (2007) Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene. PLoS Genet., 3, 1813-1826.
-
(2007)
PLoS Genet.
, vol.3
, pp. 1813-1826
-
-
Santangelo, A.M.1
De Souza, F.S.2
Franchini, L.F.3
Bumaschny, V.F.4
Low, M.J.5
Rubinstein, M.6
-
33
-
-
80053067142
-
Convergent evolution of two mammalian neuronal enhancers by sequential exaptation of unrelated retroposons
-
Franchini, L.F., Lopez-Leal, R., Nasif, S., Beati, P., Gelman, D.M., Low, M.J., de Souza, F.J. and Rubinstein, M. (2011) Convergent evolution of two mammalian neuronal enhancers by sequential exaptation of unrelated retroposons. Proc. Natl Acad. Sci. USA, 108, 15270-15275.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 15270-15275
-
-
Franchini, L.F.1
Lopez-Leal, R.2
Nasif, S.3
Beati, P.4
Gelman, D.M.5
Low, M.J.6
De Souza, F.J.7
Rubinstein, M.8
-
34
-
-
77955627648
-
Long-range function of an intergenic retrotransposon
-
Pi, W., Zhu, X., Wu, M., Wang, Y., Fulzele, S., Eroglu, A., Ling, J. and Tuan, D. (2010) Long-range function of an intergenic retrotransposon. Proc. Natl Acad. Sci. USA, 107, 12992-12997.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 12992-12997
-
-
Pi, W.1
Zhu, X.2
Wu, M.3
Wang, Y.4
Fulzele, S.5
Eroglu, A.6
Ling, J.7
Tuan, D.8
-
35
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M.P., Cheng, A.W., Welstead, G.G., Kooistra, T., Carey, B.W., Steine, E.J., Hanna, J., Lodato, M.A., Frampton, G.M., Sharp, P.A. et al. (2010) Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl Acad. Sci. USA, 107, 21931-21936.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
36
-
-
77954100084
-
Transposable elements have rewired the core regulatory network of human embryonic stem cells
-
Kunarso, G., Chia, N.Y., Jeyakani, J., Hwang, C., Lu, X., Chan, Y.S., Ng, H.H. and Bourque, G. (2010) Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat. Genet., 42, 631-634.
-
(2010)
Nat. Genet.
, vol.42
, pp. 631-634
-
-
Kunarso, G.1
Chia, N.Y.2
Jeyakani, J.3
Hwang, C.4
Lu, X.5
Chan, Y.S.6
Ng, H.H.7
Bourque, G.8
-
37
-
-
80055010534
-
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
-
Lynch, V.J., Leclerc, R.D., May, G. and Wagner, G.P. (2011) Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Nat. Genet., 43, 1154-1159.
-
(2011)
Nat. Genet.
, vol.43
, pp. 1154-1159
-
-
Lynch, V.J.1
Leclerc, R.D.2
May, G.3
Wagner, G.P.4
-
38
-
-
84874663519
-
Endogenous retroviruses function as species-specific enhancer elements in the placenta
-
Chuong, E.B., Rumi, M.A., Soares, M.J. and Baker, J.C. (2013) Endogenous retroviruses function as species-specific enhancer elements in the placenta. Nat. Genet., 45, 325-329.
-
(2013)
Nat. Genet.
, vol.45
, pp. 325-329
-
-
Chuong, E.B.1
Rumi, M.A.2
Soares, M.J.3
Baker, J.C.4
-
39
-
-
0032528255
-
Chromosome methylation patterns during mammalian preimplantation development
-
Rougier, N., Bourc'his, D., Gomes, D.M., Niveleau, A., Plachot, M., Paldi, A. and Viegas-Pequignot, E. (1998) Chromosome methylation patterns during mammalian preimplantation development. Genes Dev., 12, 2108-2113.
-
(1998)
Genes Dev.
, vol.12
, pp. 2108-2113
-
-
Rougier, N.1
Bourc'His, D.2
Gomes, D.M.3
Niveleau, A.4
Plachot, M.5
Paldi, A.6
Viegas-Pequignot, E.7
-
40
-
-
33745865934
-
Chromatin in pluripotent embryonic stem cells and differentiation
-
Meshorer, E. and Misteli, T. (2006) Chromatin in pluripotent embryonic stem cells and differentiation. Nat. Rev. Mol. Cell Biol., 7, 540-546.
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 540-546
-
-
Meshorer, E.1
Misteli, T.2
-
41
-
-
84858429240
-
Endogenous viruses: Insights into viral evolution and impact on host biology
-
Feschotte, C. and Gilbert, C. (2012) Endogenous viruses: insights into viral evolution and impact on host biology. Nat. Rev. Genet., 13, 283-296.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 283-296
-
-
Feschotte, C.1
Gilbert, C.2
-
42
-
-
84863458292
-
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
-
Macfarlan, T.S., Gifford, W.D., Driscoll, S., Lettieri, K., Rowe, H.M., Bonanomi, D., Firth, A., Singer, O., Trono, D. and Pfaff, S.L. (2012) Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature, 487, 57-63.
-
(2012)
Nature
, vol.487
, pp. 57-63
-
-
Macfarlan, T.S.1
Gifford, W.D.2
Driscoll, S.3
Lettieri, K.4
Rowe, H.M.5
Bonanomi, D.6
Firth, A.7
Singer, O.8
Trono, D.9
Pfaff, S.L.10
-
43
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney, E., Stamatoyannopoulos, J.A., Dutta, A., Guigo, R., Gingeras, T.R., Margulies, E.H., Weng, Z., Snyder, M., Dermitzakis, E.T., Thurman, R.E. et al. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447, 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
-
44
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst, J., Kheradpour, P., Mikkelsen, T.S., Shoresh, N., Ward, L.D., Epstein, C.B., Zhang, X., Wang, L., Issner, R., Coyne, M. et al. (2011) Mapping and analysis of chromatin state dynamics in nine human cell types. Nature, 473, 43-49.
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
-
45
-
-
79959898376
-
Prioritizing candidate disease genes by network-based boosting of genome-wide association data
-
Lee, I., Blom, U.M., Wang, P.I., Shim, J.E. and Marcotte, E.M. (2011) Prioritizing candidate disease genes by network-based boosting of genome-wide association data. Genome Res., 21, 1109-1121.
-
(2011)
Genome Res.
, vol.21
, pp. 1109-1121
-
-
Lee, I.1
Blom, U.M.2
Wang, P.I.3
Shim, J.E.4
Marcotte, E.M.5
-
46
-
-
54949127160
-
IRefIndex: A consolidated protein interaction database with provenance
-
Razick, S., Magklaras, G. and Donaldson, I.M. (2008) iRefIndex: a consolidated protein interaction database with provenance. BMC Bioinformatics, 9, 405.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 405
-
-
Razick, S.1
Magklaras, G.2
Donaldson, I.M.3
-
47
-
-
84876515907
-
STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
-
Franceschini, A., Szklarczyk, D., Frankild, S., Kuhn, M., Simonovic, M., Roth, A., Lin, J., Minguez, P., Bork, P., von Mering, C. et al. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res., 41, D808-D815.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
Lin, J.7
Minguez, P.8
Bork, P.9
Von Mering, C.10
-
48
-
-
75549083247
-
JASPAR 2010: The greatly expanded open-access database of transcription factor binding profiles
-
Portales-Casamar, E., Thongjuea, S., Kwon, A.T., Arenillas, D., Zhao, X., Valen, E., Yusuf, D., Lenhard, B., Wasserman, W.W. and Sandelin, A. (2010) JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Res., 38, D105-D110.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Portales-Casamar, E.1
Thongjuea, S.2
Kwon, A.T.3
Arenillas, D.4
Zhao, X.5
Valen, E.6
Yusuf, D.7
Lenhard, B.8
Wasserman, W.W.9
Sandelin, A.10
-
49
-
-
0029960055
-
TRANSFAC: A database on transcription factors and their DNA binding sites
-
Wingender, E., Dietze, P., Karas, H. and Knuppel, R. (1996) TRANSFAC: a database on transcription factors and their DNA binding sites. Nucleic Acids Res., 24, 238-241.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 238-241
-
-
Wingender, E.1
Dietze, P.2
Karas, H.3
Knuppel, R.4
-
50
-
-
58149200952
-
UniPROBE: An online database of protein binding microarray data on protein-DNA interactions
-
Newburger, D.E. and Bulyk, M.L. (2009) UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic Acids Res., 37, D77-D82.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Newburger, D.E.1
Bulyk, M.L.2
|