-
1
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
M.J. Blow, D.J. McCulley, Z. Li, T. Zhang, J.A. Akiyama, A. Holt, I. Plajzer-Frick, M. Shoukry, C. Wright, and F. Chen ChIP-Seq identification of weakly conserved heart enhancers Nat. Genet. 42 2010 806 810
-
(2010)
Nat. Genet.
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
McCulley, D.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
2
-
-
0035478854
-
Random Forests
-
L. Breiman Random Forests Mach. Learn. 45 2001 5 32
-
(2001)
Mach. Learn.
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
3
-
-
38549096565
-
JASPAR, the open access database of transcription factor-binding profiles: New content and tools in the 2008 update
-
J.C. Bryne, E. Valen, M.H. Tang, T. Marstrand, O. Winther, I. da Piedade, A. Krogh, B. Lenhard, and A. Sandelin JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update Nucleic Acids Res. 36 Database issue 2008 D102 D106
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.DATABASE ISSUE
-
-
Bryne, J.C.1
Valen, E.2
Tang, M.H.3
Marstrand, T.4
Winther, O.5
Da Piedade, I.6
Krogh, A.7
Lenhard, B.8
Sandelin, A.9
-
4
-
-
12744259874
-
Identifying SNPs predictive of phenotype using random forests
-
A. Bureau, J. Dupuis, K. Falls, K.L. Lunetta, B. Hayward, T.P. Keith, and P. Van Eerdewegh Identifying SNPs predictive of phenotype using random forests Genet. Epidemiol. 28 2005 171 182
-
(2005)
Genet. Epidemiol.
, vol.28
, pp. 171-182
-
-
Bureau, A.1
Dupuis, J.2
Falls, K.3
Lunetta, K.L.4
Hayward, B.5
Keith, T.P.6
Van Eerdewegh, P.7
-
5
-
-
79955676827
-
A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets
-
D.S. Castro, B. Martynoga, C. Parras, V. Ramesh, E. Pacary, C. Johnston, D. Drechsel, M. Lebel-Potter, L.G. Garcia, and C. Hunt A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets Genes Dev. 25 2011 930 945
-
(2011)
Genes Dev.
, vol.25
, pp. 930-945
-
-
Castro, D.S.1
Martynoga, B.2
Parras, C.3
Ramesh, V.4
Pacary, E.5
Johnston, C.6
Drechsel, D.7
Lebel-Potter, M.8
Garcia, L.G.9
Hunt, C.10
-
7
-
-
54849441959
-
Arx is a direct target of Dlx2 and thereby contributes to the tangential migration of GABAergic interneurons
-
G. Colasante, P. Collombat, V. Raimondi, D. Bonanomi, C. Ferrai, M. Maira, K. Yoshikawa, A. Mansouri, F. Valtorta, J.L. Rubenstein, and V. Broccoli Arx is a direct target of Dlx2 and thereby contributes to the tangential migration of GABAergic interneurons J. Neurosci. 28 2008 10674 10686
-
(2008)
J. Neurosci.
, vol.28
, pp. 10674-10686
-
-
Colasante, G.1
Collombat, P.2
Raimondi, V.3
Bonanomi, D.4
Ferrai, C.5
Maira, M.6
Yoshikawa, K.7
Mansouri, A.8
Valtorta, F.9
Rubenstein, J.L.10
Broccoli, V.11
-
8
-
-
80052260252
-
A copy number variation morbidity map of developmental delay
-
G.M. Cooper, B.P. Coe, S. Girirajan, J.A. Rosenfeld, T.H. Vu, C. Baker, C. Williams, H. Stalker, R. Hamid, and V. Hannig A copy number variation morbidity map of developmental delay Nat. Genet. 43 2011 838 846
-
(2011)
Nat. Genet.
, vol.43
, pp. 838-846
-
-
Cooper, G.M.1
Coe, B.P.2
Girirajan, S.3
Rosenfeld, J.A.4
Vu, T.H.5
Baker, C.6
Williams, C.7
Stalker, H.8
Hamid, R.9
Hannig, V.10
-
9
-
-
13244262710
-
Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis
-
M.P. Cummings, and M.R. Segal Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis BMC Bioinformatics 5 2004 137
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 137
-
-
Cummings, M.P.1
Segal, M.R.2
-
10
-
-
79851473886
-
A high-resolution anatomical atlas of the transcriptome in the mouse embryo
-
G. Diez-Roux, S. Banfi, M. Sultan, L. Geffers, S. Anand, D. Rozado, A. Magen, E. Canidio, M. Pagani, and I. Peluso A high-resolution anatomical atlas of the transcriptome in the mouse embryo PLoS Biol. 9 2011 e1000582
-
(2011)
PLoS Biol.
, vol.9
, pp. 1000582
-
-
Diez-Roux, G.1
Banfi, S.2
Sultan, M.3
Geffers, L.4
Anand, S.5
Rozado, D.6
Magen, A.7
Canidio, E.8
Pagani, M.9
Peluso, I.10
-
11
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
1000 Genomes Project Consortium
-
R.M. Durbin, G.R. Abecasis, D.L. Altshuler, A. Auton, L.D. Brooks, R.A. Gibbs, M.E. Hurles, G.A. McVean 1000 Genomes Project Consortium A map of human genome variation from population-scale sequencing Nature 467 2010 1061 1073
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
Durbin, R.M.1
Abecasis, G.R.2
Altshuler, D.L.3
Auton, A.4
Brooks, L.D.5
Gibbs, R.A.6
Hurles, M.E.7
McVean, G.A.8
-
12
-
-
0034051923
-
Generation of neurons by transient expression of neural bHLH proteins in mammalian cells
-
M.H. Farah, J.M. Olson, H.B. Sucic, R.I. Hume, S.J. Tapscott, and D.L. Turner Generation of neurons by transient expression of neural bHLH proteins in mammalian cells Development 127 2000 693 702
-
(2000)
Development
, vol.127
, pp. 693-702
-
-
Farah, M.H.1
Olson, J.M.2
Sucic, H.B.3
Hume, R.I.4
Tapscott, S.J.5
Turner, D.L.6
-
13
-
-
0031589555
-
Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains
-
R. Feil, J. Wagner, D. Metzger, and P. Chambon Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains Biochem. Biophys. Res. Commun. 237 1997 752 757
-
(1997)
Biochem. Biophys. Res. Commun.
, vol.237
, pp. 752-757
-
-
Feil, R.1
Wagner, J.2
Metzger, D.3
Chambon, P.4
-
14
-
-
64149099583
-
DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources
-
H.V. Firth, S.M. Richards, A.P. Bevan, S. Clayton, M. Corpas, D. Rajan, S. Van Vooren, Y. Moreau, R.M. Pettett, and N.P. Carter DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources Am. J. Hum. Genet. 84 2009 524 533
-
(2009)
Am. J. Hum. Genet.
, vol.84
, pp. 524-533
-
-
Firth, H.V.1
Richards, S.M.2
Bevan, A.P.3
Clayton, S.4
Corpas, M.5
Rajan, D.6
Van Vooren, S.7
Moreau, Y.8
Pettett, R.M.9
Carter, N.P.10
-
15
-
-
77954960062
-
Phenotypic robustness conferred by apparently redundant transcriptional enhancers
-
N. Frankel, G.K. Davis, D. Vargas, S. Wang, F. Payre, and D.L. Stern Phenotypic robustness conferred by apparently redundant transcriptional enhancers Nature 466 2010 490 493
-
(2010)
Nature
, vol.466
, pp. 490-493
-
-
Frankel, N.1
Davis, G.K.2
Vargas, D.3
Wang, S.4
Payre, F.5
Stern, D.L.6
-
16
-
-
0242401835
-
A gene expression atlas of the central nervous system based on bacterial artificial chromosomes
-
S. Gong, C. Zheng, M.L. Doughty, K. Losos, N. Didkovsky, U.B. Schambra, N.J. Nowak, A. Joyner, G. Leblanc, M.E. Hatten, and N. Heintz A gene expression atlas of the central nervous system based on bacterial artificial chromosomes Nature 425 2003 917 925
-
(2003)
Nature
, vol.425
, pp. 917-925
-
-
Gong, S.1
Zheng, C.2
Doughty, M.L.3
Losos, K.4
Didkovsky, N.5
Schambra, U.B.6
Nowak, N.J.7
Joyner, A.8
Leblanc, G.9
Hatten, M.E.10
Heintz, N.11
-
17
-
-
19944401504
-
Mouse brain organization revealed through direct genome-scale TF expression analysis
-
P.A. Gray, H. Fu, P. Luo, Q. Zhao, J. Yu, A. Ferrari, T. Tenzen, D.I. Yuk, E.F. Tsung, and Z. Cai Mouse brain organization revealed through direct genome-scale TF expression analysis Science 306 2004 2255 2257
-
(2004)
Science
, vol.306
, pp. 2255-2257
-
-
Gray, P.A.1
Fu, H.2
Luo, P.3
Zhao, Q.4
Yu, J.5
Ferrari, A.6
Tenzen, T.7
Yuk, D.I.8
Tsung, E.F.9
Cai, Z.10
-
18
-
-
49949107386
-
The genetics of early telencephalon patterning: Some assembly required
-
J.M. Hébert, and G. Fishell The genetics of early telencephalon patterning: some assembly required Nat. Rev. Neurosci. 9 2008 678 685
-
(2008)
Nat. Rev. Neurosci.
, vol.9
, pp. 678-685
-
-
Hébert, J.M.1
Fishell, G.2
-
19
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
L.A. Hindorff, P. Sethupathy, H.A. Junkins, E.M. Ramos, J.P. Mehta, F.S. Collins, and T.A. Manolio Potential etiologic and functional implications of genome-wide association loci for human diseases and traits Proc. Natl. Acad. Sci. USA 106 2009 9362 9367
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
Collins, F.S.6
Manolio, T.A.7
-
20
-
-
51149097760
-
Shadow enhancers as a source of evolutionary novelty
-
J.W. Hong, D.A. Hendrix, and M.S. Levine Shadow enhancers as a source of evolutionary novelty Science 321 2008 1314
-
(2008)
Science
, vol.321
, pp. 1314
-
-
Hong, J.W.1
Hendrix, D.A.2
Levine, M.S.3
-
21
-
-
0033571243
-
Temporally-controlled site-specific mutagenesis in the basal layer of the epidermis: Comparison of the recombinase activity of the tamoxifen-inducible Cre-ER(T) and Cre-ER(T2) recombinases
-
A.K. Indra, X. Warot, J. Brocard, J.M. Bornert, J.H. Xiao, P. Chambon, and D. Metzger Temporally-controlled site-specific mutagenesis in the basal layer of the epidermis: comparison of the recombinase activity of the tamoxifen-inducible Cre-ER(T) and Cre-ER(T2) recombinases Nucleic Acids Res. 27 1999 4324 4327
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4324-4327
-
-
Indra, A.K.1
Warot, X.2
Brocard, J.3
Bornert, J.M.4
Xiao, J.H.5
Chambon, P.6
Metzger, D.7
-
22
-
-
51649107017
-
Rare chromosomal deletions and duplications increase risk of schizophrenia
-
International Schizophrenia Consortium
-
International Schizophrenia Consortium Rare chromosomal deletions and duplications increase risk of schizophrenia Nature 455 2008 237 241
-
(2008)
Nature
, vol.455
, pp. 237-241
-
-
-
23
-
-
0023747623
-
A transgene containing lacZ inserted into the dystonia locus is expressed in neural tube
-
R. Kothary, S. Clapoff, A. Brown, R. Campbell, A. Peterson, and J. Rossant A transgene containing lacZ inserted into the dystonia locus is expressed in neural tube Nature 335 1988 435 437
-
(1988)
Nature
, vol.335
, pp. 435-437
-
-
Kothary, R.1
Clapoff, S.2
Brown, A.3
Campbell, R.4
Peterson, A.5
Rossant, J.6
-
24
-
-
4243146358
-
Regulation of Otx2 expression and its functions in mouse epiblast and anterior neuroectoderm
-
D. Kurokawa, N. Takasaki, H. Kiyonari, R. Nakayama, C. Kimura-Yoshida, I. Matsuo, and S. Aizawa Regulation of Otx2 expression and its functions in mouse epiblast and anterior neuroectoderm Development 131 2004 3307 3317
-
(2004)
Development
, vol.131
, pp. 3307-3317
-
-
Kurokawa, D.1
Takasaki, N.2
Kiyonari, H.3
Nakayama, R.4
Kimura-Yoshida, C.5
Matsuo, I.6
Aizawa, S.7
-
25
-
-
33846252240
-
Genome-wide atlas of gene expression in the adult mouse brain
-
E.S. Lein, M.J. Hawrylycz, N. Ao, M. Ayres, A. Bensinger, A. Bernard, A.F. Boe, M.S. Boguski, K.S. Brockway, and E.J. Byrnes Genome-wide atlas of gene expression in the adult mouse brain Nature 445 2007 168 176
-
(2007)
Nature
, vol.445
, pp. 168-176
-
-
Lein, E.S.1
Hawrylycz, M.J.2
Ao, N.3
Ayres, M.4
Bensinger, A.5
Bernard, A.6
Boe, A.F.7
Boguski, M.S.8
Brockway, K.S.9
Byrnes, E.J.10
-
26
-
-
0042810698
-
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
-
L.A. Lettice, S.J. Heaney, L.A. Purdie, L. Li, P. de Beer, B.A. Oostra, D. Goode, G. Elgar, R.E. Hill, and E. de Graaff A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly Hum. Mol. Genet. 12 2003 1725 1735
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 1725-1735
-
-
Lettice, L.A.1
Heaney, S.J.2
Purdie, L.A.3
Li, L.4
De Beer, P.5
Oostra, B.A.6
Goode, D.7
Elgar, G.8
Hill, R.E.9
De Graaff, E.10
-
27
-
-
65249107131
-
Schizophrenia from a neural circuitry perspective: Advancing toward rational pharmacological therapies
-
D.A. Lewis, and R.A. Sweet Schizophrenia from a neural circuitry perspective: advancing toward rational pharmacological therapies J. Clin. Invest. 119 2009 706 716
-
(2009)
J. Clin. Invest.
, vol.119
, pp. 706-716
-
-
Lewis, D.A.1
Sweet, R.A.2
-
28
-
-
59049084200
-
Dlx1&2 and Mash1 transcription factors control striatal patterning and differentiation through parallel and overlapping pathways
-
J.E. Long, C. Swan, W.S. Liang, I. Cobos, G.B. Potter, and J.L. Rubenstein Dlx1&2 and Mash1 transcription factors control striatal patterning and differentiation through parallel and overlapping pathways J. Comp. Neurol. 512 2009 556 572
-
(2009)
J. Comp. Neurol.
, vol.512
, pp. 556-572
-
-
Long, J.E.1
Swan, C.2
Liang, W.S.3
Cobos, I.4
Potter, G.B.5
Rubenstein, J.L.6
-
29
-
-
25444453244
-
Screening large-scale association study data: Exploiting interactions using random forests
-
K.L. Lunetta, L.B. Hayward, J. Segal, and P. Van Eerdewegh Screening large-scale association study data: exploiting interactions using random forests BMC Genet. 5 2004 32
-
(2004)
BMC Genet.
, vol.5
, pp. 32
-
-
Lunetta, K.L.1
Hayward, L.B.2
Segal, J.3
Van Eerdewegh, P.4
-
30
-
-
84155191408
-
High frequencies of de novo CNVs in bipolar disorder and schizophrenia
-
D. Malhotra, S. McCarthy, J.J. Michaelson, V. Vacic, K.E. Burdick, S. Yoon, S. Cichon, A. Corvin, S. Gary, and E.S. Gershon High frequencies of de novo CNVs in bipolar disorder and schizophrenia Neuron 72 2011 951 963
-
(2011)
Neuron
, vol.72
, pp. 951-963
-
-
Malhotra, D.1
McCarthy, S.2
Michaelson, J.J.3
Vacic, V.4
Burdick, K.E.5
Yoon, S.6
Cichon, S.7
Corvin, A.8
Gary, S.9
Gershon, E.S.10
-
31
-
-
40749089626
-
Structural variation of chromosomes in autism spectrum disorder
-
C.R. Marshall, A. Noor, J.B. Vincent, A.C. Lionel, L. Feuk, J. Skaug, M. Shago, R. Moessner, D. Pinto, and Y. Ren Structural variation of chromosomes in autism spectrum disorder Am. J. Hum. Genet. 82 2008 477 488
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 477-488
-
-
Marshall, C.R.1
Noor, A.2
Vincent, J.B.3
Lionel, A.C.4
Feuk, L.5
Skaug, J.6
Shago, M.7
Moessner, R.8
Pinto, D.9
Ren, Y.10
-
32
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
-
V. Matys, O.V. Kel-Margoulis, E. Fricke, I. Liebich, S. Land, A. Barre-Dirrie, I. Reuter, D. Chekmenev, M. Krull, and K. Hornischer TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes Nucleic Acids Res. 34 Database issue 2006 D108 D110
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.DATABASE ISSUE
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
Barre-Dirrie, A.6
Reuter, I.7
Chekmenev, D.8
Krull, M.9
Hornischer, K.10
-
33
-
-
84865822182
-
Systematic localization of common disease-associated variation in regulatory DNA
-
M.T. Maurano, R. Humbert, E. Rynes, R.E. Thurman, E. Haugen, H. Wang, A.P. Reynolds, R. Sandstrom, H. Qu, and J. Brody Systematic localization of common disease-associated variation in regulatory DNA Science 337 2012 1190 1195
-
(2012)
Science
, vol.337
, pp. 1190-1195
-
-
Maurano, M.T.1
Humbert, R.2
Rynes, E.3
Thurman, R.E.4
Haugen, E.5
Wang, H.6
Reynolds, A.P.7
Sandstrom, R.8
Qu, H.9
Brody, J.10
-
34
-
-
84655164920
-
Large-scale discovery of enhancers from human heart tissue
-
D. May, M.J. Blow, T. Kaplan, D.J. McCulley, B.C. Jensen, J.A. Akiyama, A. Holt, I. Plajzer-Frick, M. Shoukry, and C. Wright Large-scale discovery of enhancers from human heart tissue Nat. Genet. 44 2011 89 93
-
(2011)
Nat. Genet.
, vol.44
, pp. 89-93
-
-
May, D.1
Blow, M.J.2
Kaplan, T.3
McCulley, D.J.4
Jensen, B.C.5
Akiyama, J.A.6
Holt, A.7
Plajzer-Frick, I.8
Shoukry, M.9
Wright, C.10
-
35
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
C.Y. McLean, D. Bristor, M. Hiller, S.L. Clarke, B.T. Schaar, C.B. Lowe, A.M. Wenger, and G. Bejerano GREAT improves functional interpretation of cis-regulatory regions Nat. Biotechnol. 28 2010 495 501
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
37
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
L.A. Pennacchio, N. Ahituv, A.M. Moses, S. Prabhakar, M.A. Nobrega, M. Shoukry, S. Minovitsky, I. Dubchak, A. Holt, and K.D. Lewis In vivo enhancer analysis of human conserved non-coding sequences Nature 444 2006 499 502
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
-
38
-
-
77956601621
-
An SNP in an ultraconserved regulatory element affects Dlx5/Dlx6 regulation in the forebrain
-
L. Poitras, M. Yu, C. Lesage-Pelletier, R.B. Macdonald, J.P. Gagné, G. Hatch, I. Kelly, S.P. Hamilton, J.L. Rubenstein, G.G. Poirier, and M. Ekker An SNP in an ultraconserved regulatory element affects Dlx5/Dlx6 regulation in the forebrain Development 137 2010 3089 3097
-
(2010)
Development
, vol.137
, pp. 3089-3097
-
-
Poitras, L.1
Yu, M.2
Lesage-Pelletier, C.3
MacDonald, R.B.4
Gagné, J.P.5
Hatch, G.6
Kelly, I.7
Hamilton, S.P.8
Rubenstein, J.L.9
Poirier, G.G.10
Ekker, M.11
-
39
-
-
78049259570
-
A regulatory toolbox of MiniPromoters to drive selective expression in the brain
-
E. Portales-Casamar, D.J. Swanson, L. Liu, C.N. de Leeuw, K.G. Banks, S.J. Ho Sui, D.L. Fulton, J. Ali, M. Amirabbasi, and D.J. Arenillas A regulatory toolbox of MiniPromoters to drive selective expression in the brain Proc. Natl. Acad. Sci. USA 107 2010 16589 16594
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 16589-16594
-
-
Portales-Casamar, E.1
Swanson, D.J.2
Liu, L.3
De Leeuw, C.N.4
Banks, K.G.5
Ho Sui, S.J.6
Fulton, D.L.7
Ali, J.8
Amirabbasi, M.9
Arenillas, D.J.10
-
40
-
-
77953062527
-
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
-
D. Schmidt, M.D. Wilson, B. Ballester, P.C. Schwalie, G.D. Brown, A. Marshall, C. Kutter, S. Watt, C.P. Martinez-Jimenez, and S. Mackay Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding Science 328 2010 1036 1040
-
(2010)
Science
, vol.328
, pp. 1036-1040
-
-
Schmidt, D.1
Wilson, M.D.2
Ballester, B.3
Schwalie, P.C.4
Brown, G.D.5
Marshall, A.6
Kutter, C.7
Watt, S.8
Martinez-Jimenez, C.P.9
MacKay, S.10
-
41
-
-
34247481814
-
Strong association of de novo copy number mutations with autism
-
J. Sebat, B. Lakshmi, D. Malhotra, J. Troge, C. Lese-Martin, T. Walsh, B. Yamrom, S. Yoon, A. Krasnitz, and J. Kendall Strong association of de novo copy number mutations with autism Science 316 2007 445 449
-
(2007)
Science
, vol.316
, pp. 445-449
-
-
Sebat, J.1
Lakshmi, B.2
Malhotra, D.3
Troge, J.4
Lese-Martin, C.5
Walsh, T.6
Yamrom, B.7
Yoon, S.8
Krasnitz, A.9
Kendall, J.10
-
42
-
-
84861932338
-
Cis-regulatory control of corticospinal system development and evolution
-
S. Shim, K.Y. Kwan, M. Li, V. Lefebvre, and N. Sestan Cis-regulatory control of corticospinal system development and evolution Nature 486 2012 74 79
-
(2012)
Nature
, vol.486
, pp. 74-79
-
-
Shim, S.1
Kwan, K.Y.2
Li, M.3
Lefebvre, V.4
Sestan, N.5
-
43
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
A. Siepel, G. Bejerano, J.S. Pedersen, A.S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L.W. Hillier, and S. Richards Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes Genome Res. 15 2005 1034 1050
-
(2005)
Genome Res.
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
44
-
-
0032923739
-
Generalized lacZ expression with the ROSA26 Cre reporter strain
-
P. Soriano Generalized lacZ expression with the ROSA26 Cre reporter strain Nat. Genet. 21 1999 70 71
-
(1999)
Nat. Genet.
, vol.21
, pp. 70-71
-
-
Soriano, P.1
-
45
-
-
33847327313
-
Mapping autism risk loci using genetic linkage and chromosomal rearrangements
-
Autism Genome Project Consortium
-
P. Szatmari, A.D. Paterson, L. Zwaigenbaum, W. Roberts, J. Brian, X.Q. Liu, J.B. Vincent, J.L. Skaug, A.P. Thompson, L. Senman Autism Genome Project Consortium Mapping autism risk loci using genetic linkage and chromosomal rearrangements Nat. Genet. 39 2007 319 328
-
(2007)
Nat. Genet.
, vol.39
, pp. 319-328
-
-
Szatmari, P.1
Paterson, A.D.2
Zwaigenbaum, L.3
Roberts, W.4
Brian, J.5
Liu, X.Q.6
Vincent, J.B.7
Skaug, J.L.8
Thompson, A.P.9
Senman, L.10
-
46
-
-
79953057217
-
Duplications of the neuropeptide receptor gene VIPR2 confer significant risk for schizophrenia
-
V. Vacic, S. McCarthy, D. Malhotra, F. Murray, H.H. Chou, A. Peoples, V. Makarov, S. Yoon, A. Bhandari, and R. Corominas Duplications of the neuropeptide receptor gene VIPR2 confer significant risk for schizophrenia Nature 471 2011 499 503
-
(2011)
Nature
, vol.471
, pp. 499-503
-
-
Vacic, V.1
McCarthy, S.2
Malhotra, D.3
Murray, F.4
Chou, H.H.5
Peoples, A.6
Makarov, V.7
Yoon, S.8
Bhandari, A.9
Corominas, R.10
-
47
-
-
0346494761
-
GenePaint.org: An atlas of gene expression patterns in the mouse embryo
-
A. Visel, C. Thaller, and G. Eichele GenePaint.org: an atlas of gene expression patterns in the mouse embryo Nucleic Acids Res. 32 Database issue 2004 D552 D556
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.DATABASE ISSUE
-
-
Visel, A.1
Thaller, C.2
Eichele, G.3
-
48
-
-
33846112470
-
VISTA Enhancer Browser - A database of tissue-specific human enhancers
-
A. Visel, S. Minovitsky, I. Dubchak, and L.A. Pennacchio VISTA Enhancer Browser - a database of tissue-specific human enhancers Nucleic Acids Res. 35 Database issue 2007 D88 D92
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.DATABASE ISSUE
-
-
Visel, A.1
Minovitsky, S.2
Dubchak, I.3
Pennacchio, L.A.4
-
49
-
-
38649123306
-
Ultraconservation identifies a small subset of extremely constrained developmental enhancers
-
A. Visel, S. Prabhakar, J.A. Akiyama, M. Shoukry, K.D. Lewis, A. Holt, I. Plajzer-Frick, V. Afzal, E.M. Rubin, and L.A. Pennacchio Ultraconservation identifies a small subset of extremely constrained developmental enhancers Nat. Genet. 40 2008 158 160
-
(2008)
Nat. Genet.
, vol.40
, pp. 158-160
-
-
Visel, A.1
Prabhakar, S.2
Akiyama, J.A.3
Shoukry, M.4
Lewis, K.D.5
Holt, A.6
Plajzer-Frick, I.7
Afzal, V.8
Rubin, E.M.9
Pennacchio, L.A.10
-
50
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
A. Visel, M.J. Blow, Z. Li, T. Zhang, J.A. Akiyama, A. Holt, I. Plajzer-Frick, M. Shoukry, C. Wright, and F. Chen ChIP-seq accurately predicts tissue-specific activity of enhancers Nature 457 2009 854 858
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
51
-
-
70249088327
-
Genomic views of distant-acting enhancers
-
A. Visel, E.M. Rubin, and L.A. Pennacchio Genomic views of distant-acting enhancers Nature 461 2009 199 205
-
(2009)
Nature
, vol.461
, pp. 199-205
-
-
Visel, A.1
Rubin, E.M.2
Pennacchio, L.A.3
-
53
-
-
42349088634
-
Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia
-
T. Walsh, J.M. McClellan, S.E. McCarthy, A.M. Addington, S.B. Pierce, G.M. Cooper, A.S. Nord, M. Kusenda, D. Malhotra, and A. Bhandari Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia Science 320 2008 539 543
-
(2008)
Science
, vol.320
, pp. 539-543
-
-
Walsh, T.1
McClellan, J.M.2
McCarthy, S.E.3
Addington, A.M.4
Pierce, S.B.5
Cooper, G.M.6
Nord, A.S.7
Kusenda, M.8
Malhotra, D.9
Bhandari, A.10
-
54
-
-
0034520025
-
Induction and dorsoventral patterning of the telencephalon
-
S.W. Wilson, and J.L. Rubenstein Induction and dorsoventral patterning of the telencephalon Neuron 28 2000 641 651
-
(2000)
Neuron
, vol.28
, pp. 641-651
-
-
Wilson, S.W.1
Rubenstein, J.L.2
-
55
-
-
84859744583
-
Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures
-
H. Zeng, E.H. Shen, J.G. Hohmann, S.W. Oh, A. Bernard, J.J. Royall, K.J. Glattfelder, S.M. Sunkin, J.A. Morris, and A.L. Guillozet-Bongaarts Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures Cell 149 2012 483 496
-
(2012)
Cell
, vol.149
, pp. 483-496
-
-
Zeng, H.1
Shen, E.H.2
Hohmann, J.G.3
Oh, S.W.4
Bernard, A.5
Royall, J.J.6
Glattfelder, K.J.7
Sunkin, S.M.8
Morris, J.A.9
Guillozet-Bongaarts, A.L.10
-
56
-
-
0031008399
-
A natural classification of the basic helix-loop-helix class of transcription factors
-
W.R. Atchley, and W.M. Fitch A natural classification of the basic helix-loop-helix class of transcription factors Proc. Natl. Acad. Sci. USA 94 1997 5172 5176
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 5172-5176
-
-
Atchley, W.R.1
Fitch, W.M.2
-
57
-
-
0031901903
-
Methods and statistics for combining motif match scores
-
T.L. Bailey, and M. Gribskov Methods and statistics for combining motif match scores J. Comput. Biol. 5 1998 211 221
-
(1998)
J. Comput. Biol.
, vol.5
, pp. 211-221
-
-
Bailey, T.L.1
Gribskov, M.2
-
58
-
-
45449115390
-
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
-
M.F. Berger, G. Badis, A.R. Gehrke, S. Talukder, A.A. Philippakis, L. Peña-Castillo, T.M. Alleyne, S. Mnaimneh, O.B. Botvinnik, and E.T. Chan Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences Cell 133 2008 1266 1276
-
(2008)
Cell
, vol.133
, pp. 1266-1276
-
-
Berger, M.F.1
Badis, G.2
Gehrke, A.R.3
Talukder, S.4
Philippakis, A.A.5
Peña-Castillo, L.6
Alleyne, T.M.7
Mnaimneh, S.8
Botvinnik, O.B.9
Chan, E.T.10
-
59
-
-
54849410425
-
NeuroD1 and Mash1 temporally regulate GnRH receptor gene expression in immortalized mouse gonadotrope cells
-
B.D. Cherrington, J.S. Bailey, A.L. Diaz, and P.L. Mellon NeuroD1 and Mash1 temporally regulate GnRH receptor gene expression in immortalized mouse gonadotrope cells Mol. Cell. Endocrinol. 295 2008 106 114
-
(2008)
Mol. Cell. Endocrinol.
, vol.295
, pp. 106-114
-
-
Cherrington, B.D.1
Bailey, J.S.2
Diaz, A.L.3
Mellon, P.L.4
-
60
-
-
53349129583
-
Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs
-
J. Jeong, X. Li, R.J. McEvilly, M.G. Rosenfeld, T. Lufkin, and J.L. Rubenstein Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs Development 135 2008 2905 2916
-
(2008)
Development
, vol.135
, pp. 2905-2916
-
-
Jeong, J.1
Li, X.2
McEvilly, R.J.3
Rosenfeld, M.G.4
Lufkin, T.5
Rubenstein, J.L.6
-
61
-
-
65649112466
-
Functional and evolutionary insights into human brain development through global transcriptome analysis
-
M.B. Johnson, Y.I. Kawasawa, C.E. Mason, Z. Krsnik, G. Coppola, D. Bogdanović, D.H. Geschwind, S.M. Mane, M.W. State, and N. Sestan Functional and evolutionary insights into human brain development through global transcriptome analysis Neuron 62 2009 494 509
-
(2009)
Neuron
, vol.62
, pp. 494-509
-
-
Johnson, M.B.1
Kawasawa, Y.I.2
Mason, C.E.3
Krsnik, Z.4
Coppola, G.5
Bogdanović, D.6
Geschwind, D.H.7
Mane, S.M.8
State, M.W.9
Sestan, N.10
-
62
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
63
-
-
0345040873
-
Classification and Regression by randomForest
-
A. Liaw, and M. Wiener Classification and Regression by randomForest R News 2 2002 18 22
-
(2002)
R News
, vol.2
, pp. 18-22
-
-
Liaw, A.1
Wiener, M.2
-
64
-
-
77649259719
-
Genome-wide discovery of human heart enhancers
-
L. Narlikar, N.J. Sakabe, A.A. Blanski, F.E. Arimura, J.M. Westlund, M.A. Nobrega, and I. Ovcharenko Genome-wide discovery of human heart enhancers Genome Res. 20 2010 381 392
-
(2010)
Genome Res.
, vol.20
, pp. 381-392
-
-
Narlikar, L.1
Sakabe, N.J.2
Blanski, A.A.3
Arimura, F.E.4
Westlund, J.M.5
Nobrega, M.A.6
Ovcharenko, I.7
-
65
-
-
77952857912
-
A signal-noise model for significance analysis of ChIP-seq with negative control
-
H. Xu, L. Handoko, X. Wei, C. Ye, J. Sheng, C.L. Wei, F. Lin, and W.K. Sung A signal-noise model for significance analysis of ChIP-seq with negative control Bioinformatics 26 2010 1199 1204
-
(2010)
Bioinformatics
, vol.26
, pp. 1199-1204
-
-
Xu, H.1
Handoko, L.2
Wei, X.3
Ye, C.4
Sheng, J.5
Wei, C.L.6
Lin, F.7
Sung, W.K.8
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