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Volumn 152, Issue 4, 2013, Pages 895-908

A high-resolution enhancer atlas of the developing telencephalon

(25)  Visel, Axel a,b   Taher, Leila c   Girgis, Hani c   May, Dalit a   Golonzhka, Olga d   Hoch, Renee V d   McKinsey, Gabriel L d   Pattabiraman, Kartik d   Silberberg, Shanni N d   Blow, Matthew J b   Hansen, David V d,e   Nord, Alex S a   Akiyama, Jennifer A a   Holt, Amy a   Hosseini, Roya a   Phouanenavong, Sengthavy a   Plajzer Frick, Ingrid a   Shoukry, Malak a   Afzal, Veena a   Kaplan, Tommy f,g   more..


Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL TISSUE; ARTICLE; ATLAS; BRAIN CORTEX; BRAIN DEVELOPMENT; BRAIN REGION; BRAIN TISSUE; EMBRYO; ENHANCER REGION; GENE CONTROL; GENE EXPRESSION; HISTOLOGY; HUMAN; HUMAN TISSUE; IN VIVO STUDY; MOUSE; NONHUMAN; PRIORITY JOURNAL; TELENCEPHALON;

EID: 84874118170     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2012.12.041     Document Type: Article
Times cited : (198)

References (65)
  • 2
    • 0035478854 scopus 로고    scopus 로고
    • Random Forests
    • L. Breiman Random Forests Mach. Learn. 45 2001 5 32
    • (2001) Mach. Learn. , vol.45 , pp. 5-32
    • Breiman, L.1
  • 6
    • 34948867658 scopus 로고    scopus 로고
    • Extrapolating brain development from experimental species to humans
    • B. Clancy, B.L. Finlay, R.B. Darlington, and K.J. Anand Extrapolating brain development from experimental species to humans Neurotoxicology 28 2007 931 937
    • (2007) Neurotoxicology , vol.28 , pp. 931-937
    • Clancy, B.1    Finlay, B.L.2    Darlington, R.B.3    Anand, K.J.4
  • 9
    • 13244262710 scopus 로고    scopus 로고
    • Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis
    • M.P. Cummings, and M.R. Segal Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis BMC Bioinformatics 5 2004 137
    • (2004) BMC Bioinformatics , vol.5 , pp. 137
    • Cummings, M.P.1    Segal, M.R.2
  • 12
    • 0034051923 scopus 로고    scopus 로고
    • Generation of neurons by transient expression of neural bHLH proteins in mammalian cells
    • M.H. Farah, J.M. Olson, H.B. Sucic, R.I. Hume, S.J. Tapscott, and D.L. Turner Generation of neurons by transient expression of neural bHLH proteins in mammalian cells Development 127 2000 693 702
    • (2000) Development , vol.127 , pp. 693-702
    • Farah, M.H.1    Olson, J.M.2    Sucic, H.B.3    Hume, R.I.4    Tapscott, S.J.5    Turner, D.L.6
  • 13
    • 0031589555 scopus 로고    scopus 로고
    • Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains
    • R. Feil, J. Wagner, D. Metzger, and P. Chambon Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains Biochem. Biophys. Res. Commun. 237 1997 752 757
    • (1997) Biochem. Biophys. Res. Commun. , vol.237 , pp. 752-757
    • Feil, R.1    Wagner, J.2    Metzger, D.3    Chambon, P.4
  • 15
    • 77954960062 scopus 로고    scopus 로고
    • Phenotypic robustness conferred by apparently redundant transcriptional enhancers
    • N. Frankel, G.K. Davis, D. Vargas, S. Wang, F. Payre, and D.L. Stern Phenotypic robustness conferred by apparently redundant transcriptional enhancers Nature 466 2010 490 493
    • (2010) Nature , vol.466 , pp. 490-493
    • Frankel, N.1    Davis, G.K.2    Vargas, D.3    Wang, S.4    Payre, F.5    Stern, D.L.6
  • 18
    • 49949107386 scopus 로고    scopus 로고
    • The genetics of early telencephalon patterning: Some assembly required
    • J.M. Hébert, and G. Fishell The genetics of early telencephalon patterning: some assembly required Nat. Rev. Neurosci. 9 2008 678 685
    • (2008) Nat. Rev. Neurosci. , vol.9 , pp. 678-685
    • Hébert, J.M.1    Fishell, G.2
  • 20
    • 51149097760 scopus 로고    scopus 로고
    • Shadow enhancers as a source of evolutionary novelty
    • J.W. Hong, D.A. Hendrix, and M.S. Levine Shadow enhancers as a source of evolutionary novelty Science 321 2008 1314
    • (2008) Science , vol.321 , pp. 1314
    • Hong, J.W.1    Hendrix, D.A.2    Levine, M.S.3
  • 21
    • 0033571243 scopus 로고    scopus 로고
    • Temporally-controlled site-specific mutagenesis in the basal layer of the epidermis: Comparison of the recombinase activity of the tamoxifen-inducible Cre-ER(T) and Cre-ER(T2) recombinases
    • A.K. Indra, X. Warot, J. Brocard, J.M. Bornert, J.H. Xiao, P. Chambon, and D. Metzger Temporally-controlled site-specific mutagenesis in the basal layer of the epidermis: comparison of the recombinase activity of the tamoxifen-inducible Cre-ER(T) and Cre-ER(T2) recombinases Nucleic Acids Res. 27 1999 4324 4327
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4324-4327
    • Indra, A.K.1    Warot, X.2    Brocard, J.3    Bornert, J.M.4    Xiao, J.H.5    Chambon, P.6    Metzger, D.7
  • 22
    • 51649107017 scopus 로고    scopus 로고
    • Rare chromosomal deletions and duplications increase risk of schizophrenia
    • International Schizophrenia Consortium
    • International Schizophrenia Consortium Rare chromosomal deletions and duplications increase risk of schizophrenia Nature 455 2008 237 241
    • (2008) Nature , vol.455 , pp. 237-241
  • 23
    • 0023747623 scopus 로고
    • A transgene containing lacZ inserted into the dystonia locus is expressed in neural tube
    • R. Kothary, S. Clapoff, A. Brown, R. Campbell, A. Peterson, and J. Rossant A transgene containing lacZ inserted into the dystonia locus is expressed in neural tube Nature 335 1988 435 437
    • (1988) Nature , vol.335 , pp. 435-437
    • Kothary, R.1    Clapoff, S.2    Brown, A.3    Campbell, R.4    Peterson, A.5    Rossant, J.6
  • 27
    • 65249107131 scopus 로고    scopus 로고
    • Schizophrenia from a neural circuitry perspective: Advancing toward rational pharmacological therapies
    • D.A. Lewis, and R.A. Sweet Schizophrenia from a neural circuitry perspective: advancing toward rational pharmacological therapies J. Clin. Invest. 119 2009 706 716
    • (2009) J. Clin. Invest. , vol.119 , pp. 706-716
    • Lewis, D.A.1    Sweet, R.A.2
  • 28
    • 59049084200 scopus 로고    scopus 로고
    • Dlx1&2 and Mash1 transcription factors control striatal patterning and differentiation through parallel and overlapping pathways
    • J.E. Long, C. Swan, W.S. Liang, I. Cobos, G.B. Potter, and J.L. Rubenstein Dlx1&2 and Mash1 transcription factors control striatal patterning and differentiation through parallel and overlapping pathways J. Comp. Neurol. 512 2009 556 572
    • (2009) J. Comp. Neurol. , vol.512 , pp. 556-572
    • Long, J.E.1    Swan, C.2    Liang, W.S.3    Cobos, I.4    Potter, G.B.5    Rubenstein, J.L.6
  • 29
    • 25444453244 scopus 로고    scopus 로고
    • Screening large-scale association study data: Exploiting interactions using random forests
    • K.L. Lunetta, L.B. Hayward, J. Segal, and P. Van Eerdewegh Screening large-scale association study data: exploiting interactions using random forests BMC Genet. 5 2004 32
    • (2004) BMC Genet. , vol.5 , pp. 32
    • Lunetta, K.L.1    Hayward, L.B.2    Segal, J.3    Van Eerdewegh, P.4
  • 36
    • 0142084743 scopus 로고    scopus 로고
    • Scanning human gene deserts for long-range enhancers
    • M.A. Nobrega, I. Ovcharenko, V. Afzal, and E.M. Rubin Scanning human gene deserts for long-range enhancers Science 302 2003 413
    • (2003) Science , vol.302 , pp. 413
    • Nobrega, M.A.1    Ovcharenko, I.2    Afzal, V.3    Rubin, E.M.4
  • 42
    • 84861932338 scopus 로고    scopus 로고
    • Cis-regulatory control of corticospinal system development and evolution
    • S. Shim, K.Y. Kwan, M. Li, V. Lefebvre, and N. Sestan Cis-regulatory control of corticospinal system development and evolution Nature 486 2012 74 79
    • (2012) Nature , vol.486 , pp. 74-79
    • Shim, S.1    Kwan, K.Y.2    Li, M.3    Lefebvre, V.4    Sestan, N.5
  • 44
    • 0032923739 scopus 로고    scopus 로고
    • Generalized lacZ expression with the ROSA26 Cre reporter strain
    • P. Soriano Generalized lacZ expression with the ROSA26 Cre reporter strain Nat. Genet. 21 1999 70 71
    • (1999) Nat. Genet. , vol.21 , pp. 70-71
    • Soriano, P.1
  • 47
    • 0346494761 scopus 로고    scopus 로고
    • GenePaint.org: An atlas of gene expression patterns in the mouse embryo
    • A. Visel, C. Thaller, and G. Eichele GenePaint.org: an atlas of gene expression patterns in the mouse embryo Nucleic Acids Res. 32 Database issue 2004 D552 D556
    • (2004) Nucleic Acids Res. , vol.32 , Issue.DATABASE ISSUE
    • Visel, A.1    Thaller, C.2    Eichele, G.3
  • 48
    • 33846112470 scopus 로고    scopus 로고
    • VISTA Enhancer Browser - A database of tissue-specific human enhancers
    • A. Visel, S. Minovitsky, I. Dubchak, and L.A. Pennacchio VISTA Enhancer Browser - a database of tissue-specific human enhancers Nucleic Acids Res. 35 Database issue 2007 D88 D92
    • (2007) Nucleic Acids Res. , vol.35 , Issue.DATABASE ISSUE
    • Visel, A.1    Minovitsky, S.2    Dubchak, I.3    Pennacchio, L.A.4
  • 51
    • 70249088327 scopus 로고    scopus 로고
    • Genomic views of distant-acting enhancers
    • A. Visel, E.M. Rubin, and L.A. Pennacchio Genomic views of distant-acting enhancers Nature 461 2009 199 205
    • (2009) Nature , vol.461 , pp. 199-205
    • Visel, A.1    Rubin, E.M.2    Pennacchio, L.A.3
  • 54
    • 0034520025 scopus 로고    scopus 로고
    • Induction and dorsoventral patterning of the telencephalon
    • S.W. Wilson, and J.L. Rubenstein Induction and dorsoventral patterning of the telencephalon Neuron 28 2000 641 651
    • (2000) Neuron , vol.28 , pp. 641-651
    • Wilson, S.W.1    Rubenstein, J.L.2
  • 56
    • 0031008399 scopus 로고    scopus 로고
    • A natural classification of the basic helix-loop-helix class of transcription factors
    • W.R. Atchley, and W.M. Fitch A natural classification of the basic helix-loop-helix class of transcription factors Proc. Natl. Acad. Sci. USA 94 1997 5172 5176
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 5172-5176
    • Atchley, W.R.1    Fitch, W.M.2
  • 57
    • 0031901903 scopus 로고    scopus 로고
    • Methods and statistics for combining motif match scores
    • T.L. Bailey, and M. Gribskov Methods and statistics for combining motif match scores J. Comput. Biol. 5 1998 211 221
    • (1998) J. Comput. Biol. , vol.5 , pp. 211-221
    • Bailey, T.L.1    Gribskov, M.2
  • 59
    • 54849410425 scopus 로고    scopus 로고
    • NeuroD1 and Mash1 temporally regulate GnRH receptor gene expression in immortalized mouse gonadotrope cells
    • B.D. Cherrington, J.S. Bailey, A.L. Diaz, and P.L. Mellon NeuroD1 and Mash1 temporally regulate GnRH receptor gene expression in immortalized mouse gonadotrope cells Mol. Cell. Endocrinol. 295 2008 106 114
    • (2008) Mol. Cell. Endocrinol. , vol.295 , pp. 106-114
    • Cherrington, B.D.1    Bailey, J.S.2    Diaz, A.L.3    Mellon, P.L.4
  • 60
    • 53349129583 scopus 로고    scopus 로고
    • Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs
    • J. Jeong, X. Li, R.J. McEvilly, M.G. Rosenfeld, T. Lufkin, and J.L. Rubenstein Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs Development 135 2008 2905 2916
    • (2008) Development , vol.135 , pp. 2905-2916
    • Jeong, J.1    Li, X.2    McEvilly, R.J.3    Rosenfeld, M.G.4    Lufkin, T.5    Rubenstein, J.L.6
  • 62
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 63
    • 0345040873 scopus 로고    scopus 로고
    • Classification and Regression by randomForest
    • A. Liaw, and M. Wiener Classification and Regression by randomForest R News 2 2002 18 22
    • (2002) R News , vol.2 , pp. 18-22
    • Liaw, A.1    Wiener, M.2
  • 65
    • 77952857912 scopus 로고    scopus 로고
    • A signal-noise model for significance analysis of ChIP-seq with negative control
    • H. Xu, L. Handoko, X. Wei, C. Ye, J. Sheng, C.L. Wei, F. Lin, and W.K. Sung A signal-noise model for significance analysis of ChIP-seq with negative control Bioinformatics 26 2010 1199 1204
    • (2010) Bioinformatics , vol.26 , pp. 1199-1204
    • Xu, H.1    Handoko, L.2    Wei, X.3    Ye, C.4    Sheng, J.5    Wei, C.L.6    Lin, F.7    Sung, W.K.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.