Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks

Proceedings of the National Academy of Sciences of the United States of America

Volumn 110, Issue 29, 2013, Pages 11952-11957

  White, Michael A ^a   Myers, Connie A ^b   Corbo, Joseph C ^b   Cohen, Barak A ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b WASHINGTON UNIVERSITY   (United States)

Author keywords

Gene Regulation; Systems Biology; Transcription Factor Binding

Indexed keywords

DINUCLEOTIDE; DNA; RHODOPSIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CRX; UNCLASSIFIED DRUG;

ARTICLE; ASSAY; CHROMATIN IMMUNOPRECIPITATION; CIS ISOMER; CONTROLLED STUDY; DNA BASE COMPOSITION; GENE SEQUENCE; GENOME; HOMEOBOX; IN VIVO STUDY; PARALLEL ENHANCER ASSAY; PHOTORECEPTOR; POINT MUTATION; PRIORITY JOURNAL; PROTEIN MOTIF; RETINA; SEQUENCE ANALYSIS; TRANSCRIPTION INITIATION;

GENE REGULATION; SYSTEMS BIOLOGY; TRANSCRIPTION FACTOR BINDING;

ANIMALS; BASE COMPOSITION; BASE SEQUENCE; CHROMATIN IMMUNOPRECIPITATION; DNA; DNA PRIMERS; GENE EXPRESSION REGULATION; GENE LIBRARY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOMEODOMAIN PROTEINS; MICE; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; RETINA; STATISTICS, NONPARAMETRIC; TRANS-ACTIVATORS;

EID: 84880362638     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1307449110     Document Type: Article

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