-
1
-
-
78650304236
-
Charting histone modifications and the functional organization of mammalian genomes
-
Zhou VW, Goren A, Bernstein BE (2011) Charting histone modifications and the functional organization of mammalian genomes. Nat Rev Genet 12(1):7-18.
-
(2011)
Nat Rev Genet
, vol.12
, Issue.1
, pp. 7-18
-
-
Zhou, V.W.1
Goren, A.2
Bernstein, B.E.3
-
2
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst J, et al. (2011) Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473(7345):43-49.
-
(2011)
Nature
, vol.473
, Issue.7345
, pp. 43-49
-
-
Ernst, J.1
-
3
-
-
78650747491
-
Discovery and characterization of chromatin states for systematic annotation of the human genome
-
Ernst J, Kellis M (2010) Discovery and characterization of chromatin states for systematic annotation of the human genome. Nat Biotechnol 28(8):817-825.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.8
, pp. 817-825
-
-
Ernst, J.1
Kellis, M.2
-
4
-
-
84857707318
-
ChromHMM: Automating chromatin-state discovery and characterization
-
Ernst J, Kellis M (2012) ChromHMM: Automating chromatin-state discovery and characterization. Nat Methods 9(3):215-216.
-
(2012)
Nat Methods
, vol.9
, Issue.3
, pp. 215-216
-
-
Ernst, J.1
Kellis, M.2
-
5
-
-
84862785201
-
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
-
Hoffman MM, et al. (2012) Unsupervised pattern discovery in human chromatin structure through genomic segmentation. Nat Methods 9(5):473-476.
-
(2012)
Nat Methods
, vol.9
, Issue.5
, pp. 473-476
-
-
Hoffman, M.M.1
-
6
-
-
84875448918
-
Integrative annotation of chromatin elements from ENCODE data
-
Hoffman MM, et al. (2013) Integrative annotation of chromatin elements from ENCODE data. Nucleic Acids Res 41(2):827-841.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.2
, pp. 827-841
-
-
Hoffman, M.M.1
-
7
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
Bernstein BE, et al.; ENCODE Project Consortium (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489(7414):57-74.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 57-74
-
-
Bernstein, B.E.1
-
8
-
-
84862909349
-
Five years of GWAS discovery
-
Visscher PM, Brown MA, McCarthy MI, Yang J (2012) Five years of GWAS discovery. Am J Hum Genet 90(1):7-24.
-
(2012)
Am J Hum Genet
, vol.90
, Issue.1
, pp. 7-24
-
-
Visscher, P.M.1
Brown, M.A.2
McCarthy, M.I.3
Yang, J.4
-
9
-
-
78049446282
-
Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci
-
NISC Comparative Sequencing Program
-
Stitzel ML, et al.; NISC Comparative Sequencing Program (2010) Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci. Cell Metab 12(5):443-455.
-
(2010)
Cell Metab
, vol.12
, Issue.5
, pp. 443-455
-
-
Stitzel, M.L.1
-
10
-
-
79955550445
-
A user's guide to the encyclopedia of DNA elements (ENCODE)
-
ENCODE Project Consortium
-
ENCODE Project Consortium (2011) A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol 9:e1001046.
-
(2011)
PLoS Biol
, vol.9
-
-
-
11
-
-
84865777819
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
-
Landt SG, et al. (2012) ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res 22(9):1813-1831.
-
(2012)
Genome Res
, vol.22
, Issue.9
, pp. 1813-1831
-
-
Landt, S.G.1
-
12
-
-
0023663887
-
Position-independent, high-level expression of the human beta-globin gene in transgenic mice
-
Grosveld F, van Assendelft GB, Greaves DR, Kollias G (1987) Position-independent, high-level expression of the human beta-globin gene in transgenic mice. Cell 51(6): 975-985.
-
(1987)
Cell
, vol.51
, Issue.6
, pp. 975-985
-
-
Grosveld, F.1
Van Assendelft, G.B.2
Greaves, D.R.3
Kollias, G.4
-
13
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
Sanyal A, Lajoie BR, Jain G, Dekker J (2012) The long-range interaction landscape of gene promoters. Nature 489(7414):109-113.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
14
-
-
0036839549
-
Locus control regions
-
Li Q, Peterson KR, Fang X, Stamatoyannopoulos G (2002) Locus control regions. Blood 100(9):3077-3086.
-
(2002)
Blood
, vol.100
, Issue.9
, pp. 3077-3086
-
-
Li, Q.1
Peterson, K.R.2
Fang, X.3
Stamatoyannopoulos, G.4
-
15
-
-
84879208137
-
Cohesin at active genes: A unifying theme for cohesin and gene expression from model organisms to humans
-
Dorsett D, Merkenschlager M (2013) Cohesin at active genes: A unifying theme for cohesin and gene expression from model organisms to humans. Curr Opin Cell Biol 25(3):327-333.
-
(2013)
Curr Opin Cell Biol
, vol.25
, Issue.3
, pp. 327-333
-
-
Dorsett, D.1
Merkenschlager, M.2
-
16
-
-
77951836691
-
A CTCF-independent role for cohesin in tissue-specific transcription
-
Schmidt D, et al. (2010) A CTCF-independent role for cohesin in tissue-specific transcription. Genome Res 20(5):578-588.
-
(2010)
Genome Res
, vol.20
, Issue.5
, pp. 578-588
-
-
Schmidt, D.1
-
17
-
-
84882738244
-
Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites
-
Yan J, et al. (2013) Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites. Cell 154(4):801-813.
-
(2013)
Cell
, vol.154
, Issue.4
, pp. 801-813
-
-
Yan, J.1
-
18
-
-
77955499945
-
From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus
-
Musunuru K, et al. (2010) From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus. Nature 466(7307):714-719.
-
(2010)
Nature
, vol.466
, Issue.7307
, pp. 714-719
-
-
Musunuru, K.1
-
19
-
-
68149170044
-
The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling
-
Tuupanen S, et al. (2009) The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling. Nat Genet 41(8):885-890.
-
(2009)
Nat Genet
, vol.41
, Issue.8
, pp. 885-890
-
-
Tuupanen, S.1
-
20
-
-
84870674626
-
Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors
-
Sur IK, et al. (2012) Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors. Science 338(6112):1360-1363.
-
(2012)
Science
, vol.338
, Issue.6112
, pp. 1360-1363
-
-
Sur, I.K.1
-
21
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
Li G, et al. (2012) Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 148(1-2):84-98.
-
(2012)
Cell
, vol.148
, Issue.1-2
, pp. 84-98
-
-
Li, G.1
-
22
-
-
12344269924
-
GO:TermFinder-Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle EI, et al. (2004) GO:TermFinder-Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20(18):3710-3715.
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3710-3715
-
-
Boyle, E.I.1
-
23
-
-
49949096013
-
Gene Ontology term overlap as a measure of gene functional similarity
-
Mistry M, Pavlidis P (2008) Gene Ontology term overlap as a measure of gene functional similarity. BMC Bioinformatics 9:327.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 327
-
-
Mistry, M.1
Pavlidis, P.2
-
24
-
-
84865822182
-
Systematic localization of common disease-associated variation in regulatory DNA
-
Maurano MT, et al. (2012) Systematic localization of common disease-associated variation in regulatory DNA. Science 337(6099):1190-1195.
-
(2012)
Science
, vol.337
, Issue.6099
, pp. 1190-1195
-
-
Maurano, M.T.1
-
25
-
-
84873086126
-
Chromatin marks identify critical cell types for fine mapping complex trait variants
-
Trynka G, et al. (2013) Chromatin marks identify critical cell types for fine mapping complex trait variants. Nat Genet 45(2):124-130.
-
(2013)
Nat Genet
, vol.45
, Issue.2
, pp. 124-130
-
-
Trynka, G.1
-
26
-
-
84869436774
-
Interpreting noncoding genetic variation in complex traits and human disease
-
Ward LD, Kellis M (2012) Interpreting noncoding genetic variation in complex traits and human disease. Nat Biotechnol 30(11):1095-1106.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.11
, pp. 1095-1106
-
-
Ward, L.D.1
Kellis, M.2
-
27
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, et al. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125(2):315-326.
-
(2006)
Cell
, vol.125
, Issue.2
, pp. 315-326
-
-
Bernstein, B.E.1
-
28
-
-
84873310426
-
Genome-wide chromatin state transitions associated with developmental and environmental cues
-
Zhu J, et al. (2013) Genome-wide chromatin state transitions associated with developmental and environmental cues. Cell 152(3):642-654.
-
(2013)
Cell
, vol.152
, Issue.3
, pp. 642-654
-
-
Zhu, J.1
-
29
-
-
78650453629
-
DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail
-
Vuzman D, Levy Y (2010) DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail. Proc Natl Acad Sci USA 107(49): 21004-21009.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.49
, pp. 21004-21009
-
-
Vuzman, D.1
Levy, Y.2
-
30
-
-
84876216563
-
Master transcription factors and mediator establish superenhancers at key cell identity genes
-
Whyte WA, et al. (2013) Master transcription factors and mediator establish superenhancers at key cell identity genes. Cell 153(2):307-319.
-
(2013)
Cell
, vol.153
, Issue.2
, pp. 307-319
-
-
Whyte, W.A.1
-
31
-
-
84876222028
-
Selective inhibition of tumor oncogenes by disruption of superenhancers
-
Lovén J, et al. (2013) Selective inhibition of tumor oncogenes by disruption of superenhancers. Cell 153(2):320-334.
-
(2013)
Cell
, vol.153
, Issue.2
, pp. 320-334
-
-
Lovén, J.1
-
32
-
-
84861335436
-
Pharmacogene regulatory elements: From discovery to applications
-
Smith RP, Lam ET, Markova S, Yee SW, Ahituv N (2012) Pharmacogene regulatory elements: From discovery to applications. Genome Med 4(5):45.
-
(2012)
Genome Med
, vol.4
, Issue.5
, pp. 45
-
-
Smith, R.P.1
Lam, E.T.2
Markova, S.3
Yee, S.W.4
Ahituv, N.5
-
33
-
-
70350453755
-
The human insulin gene is part of a large open chromatin domain specific for human islets
-
Mutskov V, Felsenfeld G (2009) The human insulin gene is part of a large open chromatin domain specific for human islets. Proc Natl Acad Sci USA 106(41):17419-17424.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.41
, pp. 17419-17424
-
-
Mutskov, V.1
Felsenfeld, G.2
|