메뉴 건너뛰기




Volumn 93, Issue 2, 2013, Pages 249-263

Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing

(39)  Jiang, Yong Hui a   Yuen, Ryan K C b   Jin, Xin c,d,e   Wang, Mingbang c   Chen, Nong c   Wu, Xueli c   Ju, Jia c   Mei, Junpu c   Shi, Yujian c   He, Mingze c   Wang, Guangbiao c   Liang, Jieqin c   Wang, Zhe c   Cao, Dandan c   Carter, Melissa T f   Chrysler, Christina g   Drmic, Irene E g   Howe, Jennifer L b   Lau, Lynette b   Marshall, Christian R b,h   more..


Author keywords

[No Author keywords available]

Indexed keywords

ARHGEF6 PROTEIN; BCORL1 PROTEIN; CAPRIN1 PROTEIN; CHD7 PROTEIN; DMD PROTEIN; DNA METHYLTRANSFERASE 3A; FRAGILE X MENTAL RETARDATION PROTEIN; GENOMIC DNA; POTASSIUM CHANNEL KCNQ2; PROTEIN; SODIUM CHANNEL NAV1.2; UBIQUITIN; UNCLASSIFIED DRUG; VASOACTIVE INTESTINAL POLYPEPTIDE; WWC3 PROTEIN; ZC3H12B PROTEIN;

EID: 84881664021     PISSN: 00029297     EISSN: 15376605     Source Type: Journal    
DOI: 10.1016/j.ajhg.2013.06.012     Document Type: Article
Times cited : (374)

References (90)
  • 1
    • 79959981749 scopus 로고    scopus 로고
    • Risk factors for autism: Translating genomic discoveries into diagnostics
    • S.W. Scherer, and G. Dawson Risk factors for autism: translating genomic discoveries into diagnostics Hum. Genet. 130 2011 123 148
    • (2011) Hum. Genet. , vol.130 , pp. 123-148
    • Scherer, S.W.1    Dawson, G.2
  • 2
    • 84875898947 scopus 로고    scopus 로고
    • Autism spectrum disorder in the genetics clinic: A review
    • M.T. Carter, and S.W. Scherer Autism spectrum disorder in the genetics clinic: a review Clin. Genet. 83 2013 399 407
    • (2013) Clin. Genet. , vol.83 , pp. 399-407
    • Carter, M.T.1    Scherer, S.W.2
  • 3
    • 79952313620 scopus 로고    scopus 로고
    • Etiological heterogeneity in autism spectrum disorders: More than 100 genetic and genomic disorders and still counting
    • C. Betancur Etiological heterogeneity in autism spectrum disorders: more than 100 genetic and genomic disorders and still counting Brain Res. 1380 2011 42 77
    • (2011) Brain Res. , vol.1380 , pp. 42-77
    • Betancur, C.1
  • 4
    • 80054803302 scopus 로고    scopus 로고
    • Epilepsy and autism: Neurodevelopmental perspective
    • R. Tuchman, and M. Cuccaro Epilepsy and autism: neurodevelopmental perspective Curr. Neurol. Neurosci. Rep. 11 2011 428 434
    • (2011) Curr. Neurol. Neurosci. Rep. , vol.11 , pp. 428-434
    • Tuchman, R.1    Cuccaro, M.2
  • 5
    • 84862493260 scopus 로고    scopus 로고
    • Genetic architecture in autism spectrum disorder
    • B. Devlin, and S.W. Scherer Genetic architecture in autism spectrum disorder Curr. Opin. Genet. Dev. 22 2012 229 237
    • (2012) Curr. Opin. Genet. Dev. , vol.22 , pp. 229-237
    • Devlin, B.1    Scherer, S.W.2
  • 8
    • 58149178561 scopus 로고    scopus 로고
    • AutDB: A gene reference resource for autism research
    • S.N. Basu, R. Kollu, and S. Banerjee-Basu AutDB: a gene reference resource for autism research Nucleic Acids Res. 37 Database issue 2009 D832 D836
    • (2009) Nucleic Acids Res. , vol.37 , Issue.DATABASE ISSUE
    • Basu, S.N.1    Kollu, R.2    Banerjee-Basu, S.3
  • 14
    • 84871371945 scopus 로고    scopus 로고
    • The autism sequencing consortium: Large-scale, high-throughput sequencing in autism spectrum disorders
    • Autism Sequencing Consortium
    • J.D. Buxbaum, M.J. Daly, B. Devlin, T. Lehner, K. Roeder, M.W. State Autism Sequencing Consortium The autism sequencing consortium: large-scale, high-throughput sequencing in autism spectrum disorders Neuron 76 2012 1052 1056
    • (2012) Neuron , vol.76 , pp. 1052-1056
    • Buxbaum, J.D.1    Daly, M.J.2    Devlin, B.3    Lehner, T.4    Roeder, K.5    State, M.W.6
  • 27
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 30
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • K. Wang, M. Li, and H. Hakonarson ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Nucleic Acids Res. 38 2010 e164
    • (2010) Nucleic Acids Res. , vol.38 , pp. 164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 34
    • 79951970227 scopus 로고    scopus 로고
    • CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
    • A. Abyzov, A.E. Urban, M. Snyder, and M. Gerstein CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing Genome Res. 21 2011 974 984
    • (2011) Genome Res. , vol.21 , pp. 974-984
    • Abyzov, A.1    Urban, A.E.2    Snyder, M.3    Gerstein, M.4
  • 35
    • 33751527925 scopus 로고    scopus 로고
    • Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome
    • J. Zhang, L. Feuk, G.E. Duggan, R. Khaja, and S.W. Scherer Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome Cytogenet. Genome Res. 115 2006 205 214
    • (2006) Cytogenet. Genome Res. , vol.115 , pp. 205-214
    • Zhang, J.1    Feuk, L.2    Duggan, G.E.3    Khaja, R.4    Scherer, S.W.5
  • 37
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • P. Kumar, S. Henikoff, and P.C. Ng Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm Nat. Protoc. 4 2009 1073 1081
    • (2009) Nat. Protoc. , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 39
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
    • W. McLaren, B. Pritchard, D. Rios, Y. Chen, P. Flicek, and F. Cunningham Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor Bioinformatics 26 2010 2069 2070
    • (2010) Bioinformatics , vol.26 , pp. 2069-2070
    • McLaren, W.1    Pritchard, B.2    Rios, D.3    Chen, Y.4    Flicek, P.5    Cunningham, F.6
  • 41
    • 77955151784 scopus 로고    scopus 로고
    • MutationTaster evaluates disease-causing potential of sequence alterations
    • J.M. Schwarz, C. Rödelsperger, M. Schuelke, and D. Seelow MutationTaster evaluates disease-causing potential of sequence alterations Nat. Methods 7 2010 575 576
    • (2010) Nat. Methods , vol.7 , pp. 575-576
    • Schwarz, J.M.1    Rödelsperger, C.2    Schuelke, M.3    Seelow, D.4
  • 42
    • 0026678490 scopus 로고
    • Methylation of HpaII and HhaI sites near the polymorphic CAG repeat in the human androgen-receptor gene correlates with X chromosome inactivation
    • R.C. Allen, H.Y. Zoghbi, A.B. Moseley, H.M. Rosenblatt, and J.W. Belmont Methylation of HpaII and HhaI sites near the polymorphic CAG repeat in the human androgen-receptor gene correlates with X chromosome inactivation Am. J. Hum. Genet. 51 1992 1229 1239
    • (1992) Am. J. Hum. Genet. , vol.51 , pp. 1229-1239
    • Allen, R.C.1    Zoghbi, H.Y.2    Moseley, A.B.3    Rosenblatt, H.M.4    Belmont, J.W.5
  • 47
    • 84870900036 scopus 로고    scopus 로고
    • Deleterious- and disease-allele prevalence in healthy individuals: Insights from current predictions, mutation databases, and population-scale resequencing
    • 1000 Genomes Project Consortium
    • Y. Xue, Y. Chen, Q. Ayub, N. Huang, E.V. Ball, M. Mort, A.D. Phillips, K. Shaw, P.D. Stenson, D.N. Cooper, C. Tyler-Smith 1000 Genomes Project Consortium Deleterious- and disease-allele prevalence in healthy individuals: insights from current predictions, mutation databases, and population-scale resequencing Am. J. Hum. Genet. 91 2012 1022 1032
    • (2012) Am. J. Hum. Genet. , vol.91 , pp. 1022-1032
    • Xue, Y.1    Chen, Y.2    Ayub, Q.3    Huang, N.4    Ball, E.V.5    Mort, M.6    Phillips, A.D.7    Shaw, K.8    Stenson, P.D.9    Cooper, D.N.10    Tyler-Smith, C.11
  • 53
    • 34250667575 scopus 로고    scopus 로고
    • Vasoactive intestinal peptide antagonist treatment during mouse embryogenesis impairs social behavior and cognitive function of adult male offspring
    • J.M. Hill, K. Cuasay, and D.T. Abebe Vasoactive intestinal peptide antagonist treatment during mouse embryogenesis impairs social behavior and cognitive function of adult male offspring Exp. Neurol. 206 2007 101 113
    • (2007) Exp. Neurol. , vol.206 , pp. 101-113
    • Hill, J.M.1    Cuasay, K.2    Abebe, D.T.3
  • 54
    • 84862667070 scopus 로고    scopus 로고
    • Fragile X mental retardation protein interacts with the RNA-binding protein Caprin1 in neuronal RiboNucleoProtein complexes
    • R. El Fatimy, S. Tremblay, A.Y. Dury, S. Solomon, P. De Koninck, J.W. Schrader, and E.W. Khandjian Fragile X mental retardation protein interacts with the RNA-binding protein Caprin1 in neuronal RiboNucleoProtein complexes PLoS ONE 7 2012 e39338
    • (2012) PLoS ONE , vol.7 , pp. 39338
    • El Fatimy, R.1    Tremblay, S.2    Dury, A.Y.3    Solomon, S.4    De Koninck, P.5    Schrader, J.W.6    Khandjian, E.W.7
  • 55
    • 77957190328 scopus 로고    scopus 로고
    • RNG105 deficiency impairs the dendritic localization of mRNAs for Na+/K+ ATPase subunit isoforms and leads to the degeneration of neuronal networks
    • N. Shiina, K. Yamaguchi, and M. Tokunaga RNG105 deficiency impairs the dendritic localization of mRNAs for Na+/K+ ATPase subunit isoforms and leads to the degeneration of neuronal networks J. Neurosci. 30 2010 12816 12830
    • (2010) J. Neurosci. , vol.30 , pp. 12816-12830
    • Shiina, N.1    Yamaguchi, K.2    Tokunaga, M.3
  • 58
    • 9444238033 scopus 로고    scopus 로고
    • The product of X-linked Kallmann's syndrome gene (KAL1) affects the migratory activity of gonadotropin-releasing hormone (GnRH)-producing neurons
    • A. Cariboni, F. Pimpinelli, S. Colamarino, R. Zaninetti, M. Piccolella, C. Rumio, F. Piva, E.I. Rugarli, and R. Maggi The product of X-linked Kallmann's syndrome gene (KAL1) affects the migratory activity of gonadotropin-releasing hormone (GnRH)-producing neurons Hum. Mol. Genet. 13 2004 2781 2791
    • (2004) Hum. Mol. Genet. , vol.13 , pp. 2781-2791
    • Cariboni, A.1    Pimpinelli, F.2    Colamarino, S.3    Zaninetti, R.4    Piccolella, M.5    Rumio, C.6    Piva, F.7    Rugarli, E.I.8    Maggi, R.9
  • 59
    • 0037197904 scopus 로고    scopus 로고
    • Heparan sulfate proteoglycan-dependent induction of axon branching and axon misrouting by the Kallmann syndrome gene kal-1
    • H.E. Bülow, K.L. Berry, L.H. Topper, E. Peles, and O. Hobert Heparan sulfate proteoglycan-dependent induction of axon branching and axon misrouting by the Kallmann syndrome gene kal-1 Proc. Natl. Acad. Sci. USA 99 2002 6346 6351
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6346-6351
    • Bülow, H.E.1    Berry, K.L.2    Topper, L.H.3    Peles, E.4    Hobert, O.5
  • 60
    • 33744803185 scopus 로고    scopus 로고
    • Brief report: "The autism epidemic". The registered prevalence of autism in a Swedish urban area
    • C. Gillberg, M. Cederlund, K. Lamberg, and L. Zeijlon Brief report: "the autism epidemic". The registered prevalence of autism in a Swedish urban area J. Autism Dev. Disord. 36 2006 429 435
    • (2006) J. Autism Dev. Disord. , vol.36 , pp. 429-435
    • Gillberg, C.1    Cederlund, M.2    Lamberg, K.3    Zeijlon, L.4
  • 64
    • 0030137717 scopus 로고    scopus 로고
    • Identification of the gene FMR2, associated with FRAXE mental retardation
    • J. Gecz, A.K. Gedeon, G.R. Sutherland, and J.C. Mulley Identification of the gene FMR2, associated with FRAXE mental retardation Nat. Genet. 13 1996 105 108
    • (1996) Nat. Genet. , vol.13 , pp. 105-108
    • Gecz, J.1    Gedeon, A.K.2    Sutherland, G.R.3    Mulley, J.C.4
  • 68
    • 84860817223 scopus 로고    scopus 로고
    • Recent explosive human population growth has resulted in an excess of rare genetic variants
    • A. Keinan, and A.G. Clark Recent explosive human population growth has resulted in an excess of rare genetic variants Science 336 2012 740 743
    • (2012) Science , vol.336 , pp. 740-743
    • Keinan, A.1    Clark, A.G.2
  • 69
    • 84863556835 scopus 로고    scopus 로고
    • Evolution and functional impact of rare coding variation from deep sequencing of human exomes
    • Broad GO Seattle GO NHLBI Exome Sequencing Project
    • J.A. Tennessen, A.W. Bigham, T.D. O'Connor, W. Fu, E.E. Kenny, S. Gravel, S. McGee, R. Do, X. Liu, G. Jun Broad GO Seattle GO NHLBI Exome Sequencing Project Evolution and functional impact of rare coding variation from deep sequencing of human exomes Science 337 2012 64 69
    • (2012) Science , vol.337 , pp. 64-69
    • Tennessen, J.A.1    Bigham, A.W.2    O'Connor, T.D.3    Fu, W.4    Kenny, E.E.5    Gravel, S.6    McGee, S.7    Do, R.8    Liu, X.9    Jun, G.10
  • 73
    • 70350719241 scopus 로고    scopus 로고
    • Autism spectrum conditions in individuals with Möbius sequence, CHARGE syndrome and oculo-auriculo-vertebral spectrum: Diagnostic aspects
    • M. Johansson, C. Gillberg, and M. Råstam Autism spectrum conditions in individuals with Möbius sequence, CHARGE syndrome and oculo-auriculo-vertebral spectrum: diagnostic aspects Res. Dev. Disabil. 31 2010 9 24
    • (2010) Res. Dev. Disabil. , vol.31 , pp. 9-24
    • Johansson, M.1    Gillberg, C.2    Råstam, M.3
  • 81
    • 82255192290 scopus 로고    scopus 로고
    • The conundrums of understanding genetic risks for autism spectrum disorders
    • M.W. State, and P. Levitt The conundrums of understanding genetic risks for autism spectrum disorders Nat. Neurosci. 14 2011 1499 1506
    • (2011) Nat. Neurosci. , vol.14 , pp. 1499-1506
    • State, M.W.1    Levitt, P.2
  • 82
    • 84867094392 scopus 로고    scopus 로고
    • Effects of a brief Early Start Denver model (ESDM)-based parent intervention on toddlers at risk for autism spectrum disorders: A randomized controlled trial
    • S.J. Rogers, A. Estes, C. Lord, L. Vismara, J. Winter, A. Fitzpatrick, M. Guo, and G. Dawson Effects of a brief Early Start Denver model (ESDM)-based parent intervention on toddlers at risk for autism spectrum disorders: a randomized controlled trial J. Am. Acad. Child Adolesc. Psychiatry 51 2012 1052 1065
    • (2012) J. Am. Acad. Child Adolesc. Psychiatry , vol.51 , pp. 1052-1065
    • Rogers, S.J.1    Estes, A.2    Lord, C.3    Vismara, L.4    Winter, J.5    Fitzpatrick, A.6    Guo, M.7    Dawson, G.8
  • 86
    • 0034677733 scopus 로고    scopus 로고
    • The novel anticonvulsant retigabine activates M-currents in Chinese hamster ovary-cells tranfected with human KCNQ2/3 subunits
    • C. Rundfeldt, and R. Netzer The novel anticonvulsant retigabine activates M-currents in Chinese hamster ovary-cells tranfected with human KCNQ2/3 subunits Neurosci. Lett. 282 2000 73 76
    • (2000) Neurosci. Lett. , vol.282 , pp. 73-76
    • Rundfeldt, C.1    Netzer, R.2
  • 87
    • 73549119703 scopus 로고    scopus 로고
    • Identification and characterization of a small molecule antagonist of human VPAC(2) receptor
    • A. Chu, J.S. Caldwell, and Y.A. Chen Identification and characterization of a small molecule antagonist of human VPAC(2) receptor Mol. Pharmacol. 77 2010 95 101
    • (2010) Mol. Pharmacol. , vol.77 , pp. 95-101
    • Chu, A.1    Caldwell, J.S.2    Chen, Y.A.3
  • 90
    • 84868016827 scopus 로고    scopus 로고
    • Statistical challenges associated with detecting copy number variations with next-generation sequencing
    • S.M. Teo, Y. Pawitan, C.S. Ku, K.S. Chia, and A. Salim Statistical challenges associated with detecting copy number variations with next-generation sequencing Bioinformatics 28 2012 2711 2718
    • (2012) Bioinformatics , vol.28 , pp. 2711-2718
    • Teo, S.M.1    Pawitan, Y.2    Ku, C.S.3    Chia, K.S.4    Salim, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.