-
1
-
-
0033578376
-
Mammalian ELAV-like neuronal RNA-binding proteins HuB and HuC promote neuronal development in both the central and the peripheral nervous systems
-
W. Akamatsu, H.J. Okano, N. Osumi, T. Inoue, S. Nakamura, S. Sakakibara, M. Miura, N. Matsuo, R.B. Darnell, and H. Okano Mammalian ELAV-like neuronal RNA-binding proteins HuB and HuC promote neuronal development in both the central and the peripheral nervous systems Proc. Natl. Acad. Sci. USA 96 1999 9885 9890
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9885-9890
-
-
Akamatsu, W.1
Okano, H.J.2
Osumi, N.3
Inoue, T.4
Nakamura, S.5
Sakakibara, S.6
Miura, M.7
Matsuo, N.8
Darnell, R.B.9
Okano, H.10
-
2
-
-
1242319291
-
Early expression of sodium channel transcripts and sodium current by cajal-retzius cells in the preplate of the embryonic mouse neocortex
-
M. Albrieux, J.-C. Platel, A. Dupuis, M. Villaz, and W.J. Moody Early expression of sodium channel transcripts and sodium current by cajal-retzius cells in the preplate of the embryonic mouse neocortex J. Neurosci. 24 2004 1719 1725
-
(2004)
J. Neurosci.
, vol.24
, pp. 1719-1725
-
-
Albrieux, M.1
Platel, J.-C.2
Dupuis, A.3
Villaz, M.4
Moody, W.J.5
-
3
-
-
0025224615
-
Cellular migration patterns in the developing mouse cerebral cortex
-
C.P. Austin, and C.L. Cepko Cellular migration patterns in the developing mouse cerebral cortex Development 110 1990 713 732
-
(1990)
Development
, vol.110
, pp. 713-732
-
-
Austin, C.P.1
Cepko, C.L.2
-
4
-
-
82955247074
-
Sequentially acting Sox transcription factors in neural lineage development
-
M. Bergsland, D. Ramsköld, C. Zaouter, S. Klum, R. Sandberg, and J. Muhr Sequentially acting Sox transcription factors in neural lineage development Genes Dev. 25 2011 2453 2464
-
(2011)
Genes Dev.
, vol.25
, pp. 2453-2464
-
-
Bergsland, M.1
Ramsköld, D.2
Zaouter, C.3
Klum, S.4
Sandberg, R.5
Muhr, J.6
-
5
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
B.E. Bernstein, E. Birney, I. Dunham, E.D. Green, C. Gunter, M. Snyder ENCODE Project Consortium An integrated encyclopedia of DNA elements in the human genome Nature 489 2012 57 74
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
Snyder, M.6
-
6
-
-
79955518530
-
Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients
-
P. Bhatnagar, S. Purvis, E. Barron-Casella, M.R. DeBaun, J.F. Casella, D.E. Arking, and J.R. Keefer Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients J. Hum. Genet. 56 2011 316 323
-
(2011)
J. Hum. Genet.
, vol.56
, pp. 316-323
-
-
Bhatnagar, P.1
Purvis, S.2
Barron-Casella, E.3
Debaun, M.R.4
Casella, J.F.5
Arking, D.E.6
Keefer, J.R.7
-
7
-
-
77956641239
-
ChIP-Seq identification of weakly conserved heart enhancers
-
M.J. Blow, D.J. McCulley, Z. Li, T. Zhang, J.A. Akiyama, A. Holt, I. Plajzer-Frick, M. Shoukry, C. Wright, and F. Chen et al. ChIP-Seq identification of weakly conserved heart enhancers Nat. Genet. 42 2010 806 810
-
(2010)
Nat. Genet.
, vol.42
, pp. 806-810
-
-
Blow, M.J.1
McCulley, D.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
8
-
-
84856239091
-
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
-
S. Bonn, R.P. Zinzen, C. Girardot, E.H. Gustafson, A. Perez-Gonzalez, N. Delhomme, Y. Ghavi-Helm, B. Wilczyński, A. Riddell, and E.E.M. Furlong Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development Nat. Genet. 44 2012 148 156
-
(2012)
Nat. Genet.
, vol.44
, pp. 148-156
-
-
Bonn, S.1
Zinzen, R.P.2
Girardot, C.3
Gustafson, E.H.4
Perez-Gonzalez, A.5
Delhomme, N.6
Ghavi-Helm, Y.7
Wilczyński, B.8
Riddell, A.9
Furlong, E.E.M.10
-
9
-
-
0038485530
-
Heart development: Molecular insights into cardiac specification and early morphogenesis
-
T. Brand Heart development: molecular insights into cardiac specification and early morphogenesis Dev. Biol. 258 2003 1 19
-
(2003)
Dev. Biol.
, vol.258
, pp. 1-19
-
-
Brand, T.1
-
10
-
-
39749191367
-
The developmental genetics of congenital heart disease
-
B.G. Bruneau The developmental genetics of congenital heart disease Nature 451 2008 943 948
-
(2008)
Nature
, vol.451
, pp. 943-948
-
-
Bruneau, B.G.1
-
11
-
-
0034574349
-
Gene expression changes during murine postnatal brain development
-
RESEARCH0005
-
M. Clinton, J. Manson, D. McBride, and G. Miele Gene expression changes during murine postnatal brain development Genome Biol. 1 2000 RESEARCH0005
-
(2000)
Genome Biol.
, vol.1
-
-
Clinton, M.1
Manson, J.2
McBride, D.3
Miele, G.4
-
12
-
-
84861911346
-
Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb
-
J. Cotney, J. Leng, S. Oh, L.E. DeMare, S.K. Reilly, M.B. Gerstein, and J.P. Noonan Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb Genome Res. 22 2012 1069 1080
-
(2012)
Genome Res.
, vol.22
, pp. 1069-1080
-
-
Cotney, J.1
Leng, J.2
Oh, S.3
Demare, L.E.4
Reilly, S.K.5
Gerstein, M.B.6
Noonan, J.P.7
-
13
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
M.P. Creyghton, A.W. Cheng, G.G. Welstead, T. Kooistra, B.W. Carey, E.J. Steine, J. Hanna, M.A. Lodato, G.M. Frampton, and P.A. Sharp et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state Proc. Natl. Acad. Sci. USA 107 2010 21931 21936
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
14
-
-
84859238629
-
Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: A multi-ethnic meta-analysis of 45,891 individuals
-
DIAGRAM+ Consortium MAGIC Consortium GLGC Investigators MuTHER Consortium DIAGRAM Consortium GIANT Consortium Global B Pgen Consortium Procardis Consortium MAGIC investigators GLGC Consortium
-
Z. Dastani, M.-F. Hivert, N. Timpson, J.R.B. Perry, X. Yuan, R.A. Scott, P. Henneman, I.M. Heid, J.R. Kizer, L.-P. Lyytikäinen DIAGRAM+ Consortium MAGIC Consortium GLGC Investigators MuTHER Consortium DIAGRAM Consortium GIANT Consortium Global B Pgen Consortium Procardis Consortium MAGIC investigators GLGC Consortium Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals PLoS Genet. 8 2012 e1002607
-
(2012)
PLoS Genet.
, vol.8
, pp. 1002607
-
-
Dastani, Z.1
Hivert, M.-F.2
Timpson, N.3
Perry, J.R.B.4
Yuan, X.5
Scott, R.A.6
Henneman, P.7
Heid, I.M.8
Kizer, J.R.9
Lyytikäinen, L.-P.10
-
16
-
-
78650141540
-
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
-
T. Domazet-Lošo, and D. Tautz A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns Nature 468 2010 815 818
-
(2010)
Nature
, vol.468
, pp. 815-818
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
17
-
-
0028324080
-
Insulin-like growth factor i stimulates myofibril development and decreases smooth muscle alpha-actin of adult cardiomyocytes
-
M.Y. Donath, J. Zapf, M. Eppenberger-Eberhardt, E.R. Froesch, and H.M. Eppenberger Insulin-like growth factor I stimulates myofibril development and decreases smooth muscle alpha-actin of adult cardiomyocytes Proc. Natl. Acad. Sci. USA 91 1994 1686 1690
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1686-1690
-
-
Donath, M.Y.1
Zapf, J.2
Eppenberger-Eberhardt, M.3
Froesch, E.R.4
Eppenberger, H.M.5
-
18
-
-
84655162267
-
Genome-wide association study of comorbid depressive syndrome and alcohol dependence
-
A.C. Edwards, F. Aliev, L.J. Bierut, K.K. Bucholz, H. Edenberg, V. Hesselbrock, J. Kramer, S. Kuperman, J.I. Nurnberger Jr., and M.A. Schuckit et al. Genome-wide association study of comorbid depressive syndrome and alcohol dependence Psychiatr. Genet. 22 2012 31 41
-
(2012)
Psychiatr. Genet.
, vol.22
, pp. 31-41
-
-
Edwards, A.C.1
Aliev, F.2
Bierut, L.J.3
Bucholz, K.K.4
Edenberg, H.5
Hesselbrock, V.6
Kramer, J.7
Kuperman, S.8
Nurnberger, Jr.J.I.9
Schuckit, M.A.10
-
19
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
J. Ernst, P. Kheradpour, T.S. Mikkelsen, N. Shoresh, L.D. Ward, C.B. Epstein, X. Zhang, L. Wang, R. Issner, and M. Coyne et al. Mapping and analysis of chromatin state dynamics in nine human cell types Nature 473 2011 43 49
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
-
20
-
-
24644467759
-
Mutations in NOTCH1 cause aortic valve disease
-
V. Garg, A.N. Muth, J.F. Ransom, M.K. Schluterman, R. Barnes, I.N. King, P.D. Grossfeld, and D. Srivastava Mutations in NOTCH1 cause aortic valve disease Nature 437 2005 270 274
-
(2005)
Nature
, vol.437
, pp. 270-274
-
-
Garg, V.1
Muth, A.N.2
Ransom, J.F.3
Schluterman, M.K.4
Barnes, R.5
King, I.N.6
Grossfeld, P.D.7
Srivastava, D.8
-
21
-
-
84878292277
-
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
-
C.A. Gifford, M.J. Ziller, H. Gu, C. Trapnell, J. Donaghey, A. Tsankov, A.K. Shalek, D.R. Kelley, A.A. Shishkin, and R. Issner et al. Transcriptional and epigenetic dynamics during specification of human embryonic stem cells Cell 153 2013 1149 1163
-
(2013)
Cell
, vol.153
, pp. 1149-1163
-
-
Gifford, C.A.1
Ziller, M.J.2
Gu, H.3
Trapnell, C.4
Donaghey, J.5
Tsankov, A.6
Shalek, A.K.7
Kelley, D.R.8
Shishkin, A.A.9
Issner, R.10
-
22
-
-
0036301401
-
Patterning the vertebrate heart
-
R.P. Harvey Patterning the vertebrate heart Nat. Rev. Genet. 3 2002 544 556
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 544-556
-
-
Harvey, R.P.1
-
23
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
N.D. Heintzman, G.C. Hon, R.D. Hawkins, P. Kheradpour, A. Stark, L.F. Harp, Z. Ye, L.K. Lee, R.K. Stuart, and C.W. Ching et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression Nature 459 2009 108 112
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
24
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
S. Heinz, C. Benner, N. Spann, E. Bertolino, Y.C. Lin, P. Laslo, J.X. Cheng, C. Murre, H. Singh, and C.K. Glass Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities Mol. Cell 38 2010 576 589
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
25
-
-
0034617376
-
Hypertolerance to morphine in G(z alpha)-deficient mice
-
I.A. Hendry, K.L. Kelleher, S.E. Bartlett, K.J. Leck, A.J. Reynolds, K. Heydon, A. Mellick, D. Megirian, and K.I. Matthaei Hypertolerance to morphine in G(z alpha)-deficient mice Brain Res. 870 2000 10 19
-
(2000)
Brain Res.
, vol.870
, pp. 10-19
-
-
Hendry, I.A.1
Kelleher, K.L.2
Bartlett, S.E.3
Leck, K.J.4
Reynolds, A.J.5
Heydon, K.6
Mellick, A.7
Megirian, D.8
Matthaei, K.I.9
-
26
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
L.A. Hindorff, P. Sethupathy, H.A. Junkins, E.M. Ramos, J.P. Mehta, F.S. Collins, and T.A. Manolio Potential etiologic and functional implications of genome-wide association loci for human diseases and traits Proc. Natl. Acad. Sci. USA 106 2009 9362 9367
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
Collins, F.S.6
Manolio, T.A.7
-
27
-
-
0025470577
-
Novel localization of a G protein, Gz-alpha, in neurons of brain and retina
-
D.R. Hinton, J.C. Blanks, H.K. Fong, P.J. Casey, E. Hildebrandt, and M.I. Simons Novel localization of a G protein, Gz-alpha, in neurons of brain and retina J. Neurosci. 10 1990 2763 2770
-
(1990)
J. Neurosci.
, vol.10
, pp. 2763-2770
-
-
Hinton, D.R.1
Blanks, J.C.2
Fong, H.K.3
Casey, P.J.4
Hildebrandt, E.5
Simons, M.I.6
-
28
-
-
84874481845
-
Expression profiling of mouse subplate reveals a dynamic gene network and disease association with autism and schizophrenia
-
A. Hoerder-Suabedissen, F.M. Oeschger, M.L. Krishnan, T.G. Belgard, W.Z. Wang, S. Lee, C. Webber, E. Petretto, A.D. Edwards, and Z. Molnár Expression profiling of mouse subplate reveals a dynamic gene network and disease association with autism and schizophrenia Proc. Natl. Acad. Sci. USA 110 2013 3555 3560
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 3555-3560
-
-
Hoerder-Suabedissen, A.1
Oeschger, F.M.2
Krishnan, M.L.3
Belgard, T.G.4
Wang, W.Z.5
Lee, S.6
Webber, C.7
Petretto, E.8
Edwards, A.D.9
Molnár, Z.10
-
29
-
-
0034457922
-
A targeted partial invalidation of the insulin-like growth factor i receptor gene in mice causes a postnatal growth deficit
-
M. Holzenberger, P. Leneuve, G. Hamard, B. Ducos, L. Perin, M. Binoux, and Y. Le Bouc A targeted partial invalidation of the insulin-like growth factor I receptor gene in mice causes a postnatal growth deficit Endocrinology 141 2000 2557 2566
-
(2000)
Endocrinology
, vol.141
, pp. 2557-2566
-
-
Holzenberger, M.1
Leneuve, P.2
Hamard, G.3
Ducos, B.4
Perin, L.5
Binoux, M.6
Le Bouc, Y.7
-
30
-
-
70350448862
-
Adenylyl cyclase type 5 protein expression during cardiac development and stress
-
C.-L. Hu, R. Chandra, H. Ge, J. Pain, L. Yan, G. Babu, C. Depre, K. Iwatsubo, Y. Ishikawa, and J. Sadoshima et al. Adenylyl cyclase type 5 protein expression during cardiac development and stress Am. J. Physiol. Heart Circ. Physiol. 297 2009 H1776 H1782
-
(2009)
Am. J. Physiol. Heart Circ. Physiol.
, vol.297
-
-
Hu, C.-L.1
Chandra, R.2
Ge, H.3
Pain, J.4
Yan, L.5
Babu, G.6
Depre, C.7
Iwatsubo, K.8
Ishikawa, Y.9
Sadoshima, J.10
-
31
-
-
4644330950
-
Direct inhibition of type 5 adenylyl cyclase prevents myocardial apoptosis without functional deterioration
-
K. Iwatsubo, S. Minamisawa, T. Tsunematsu, M. Nakagome, Y. Toya, J.E. Tomlinson, S. Umemura, R.M. Scarborough, D.E. Levy, and Y. Ishikawa Direct inhibition of type 5 adenylyl cyclase prevents myocardial apoptosis without functional deterioration J. Biol. Chem. 279 2004 40938 40945
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 40938-40945
-
-
Iwatsubo, K.1
Minamisawa, S.2
Tsunematsu, T.3
Nakagome, M.4
Toya, Y.5
Tomlinson, J.E.6
Umemura, S.7
Scarborough, R.M.8
Levy, D.E.9
Ishikawa, Y.10
-
32
-
-
84859462157
-
The genomic basis of adaptive evolution in threespine sticklebacks
-
Broad Institute Genome Sequencing Platform & Whole Genome Assembly Team
-
F.C. Jones, M.G. Grabherr, Y.F. Chan, P. Russell, E. Mauceli, J. Johnson, R. Swofford, M. Pirun, M.C. Zody, S. White Broad Institute Genome Sequencing Platform & Whole Genome Assembly Team The genomic basis of adaptive evolution in threespine sticklebacks Nature 484 2012 55 61
-
(2012)
Nature
, vol.484
, pp. 55-61
-
-
Jones, F.C.1
Grabherr, M.G.2
Chan, Y.F.3
Russell, P.4
Mauceli, E.5
Johnson, J.6
Swofford, R.7
Pirun, M.8
Zody, M.C.9
White, S.10
-
33
-
-
78650120369
-
Gene expression divergence recapitulates the developmental hourglass model
-
A.T. Kalinka, K.M. Varga, D.T. Gerrard, S. Preibisch, D.L. Corcoran, J. Jarrells, U. Ohler, C.M. Bergman, and P. Tomancak Gene expression divergence recapitulates the developmental hourglass model Nature 468 2010 811 814
-
(2010)
Nature
, vol.468
, pp. 811-814
-
-
Kalinka, A.T.1
Varga, K.M.2
Gerrard, D.T.3
Preibisch, S.4
Corcoran, D.L.5
Jarrells, J.6
Ohler, U.7
Bergman, C.M.8
Tomancak, P.9
-
34
-
-
80054993342
-
Spatio-temporal transcriptome of the human brain
-
H.J. Kang, Y.I. Kawasawa, F. Cheng, Y. Zhu, X. Xu, M. Li, A.M.M. Sousa, M. Pletikos, K.A. Meyer, and G. Sedmak et al. Spatio-temporal transcriptome of the human brain Nature 478 2011 483 489
-
(2011)
Nature
, vol.478
, pp. 483-489
-
-
Kang, H.J.1
Kawasawa, Y.I.2
Cheng, F.3
Zhu, Y.4
Xu, X.5
Li, M.6
Sousa, A.M.M.7
Pletikos, M.8
Meyer, K.A.9
Sedmak, G.10
-
35
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
M.C. King, and A.C. Wilson Evolution at two levels in humans and chimpanzees Science 188 1975 107 116
-
(1975)
Science
, vol.188
, pp. 107-116
-
-
King, M.C.1
Wilson, A.C.2
-
36
-
-
0024584093
-
Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice
-
R. Kothary, S. Clapoff, S. Darling, M.D. Perry, L.A. Moran, and J. Rossant Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice Development 105 1989 707 714
-
(1989)
Development
, vol.105
, pp. 707-714
-
-
Kothary, R.1
Clapoff, S.2
Darling, S.3
Perry, M.D.4
Moran, L.A.5
Rossant, J.6
-
37
-
-
33847216159
-
Essential role of insulin and insulin-like growth factor 1 receptor signaling in cardiac development and function
-
P.G. Laustsen, S.J. Russell, L. Cui, A. Entingh-Pearsall, M. Holzenberger, R. Liao, and C.R. Kahn Essential role of insulin and insulin-like growth factor 1 receptor signaling in cardiac development and function Mol. Cell. Biol. 27 2007 1649 1664
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 1649-1664
-
-
Laustsen, P.G.1
Russell, S.J.2
Cui, L.3
Entingh-Pearsall, A.4
Holzenberger, M.5
Liao, R.6
Kahn, C.R.7
-
38
-
-
33747071188
-
Gz proteins are functionally coupled to dopamine D2-like receptors in vivo
-
K.J. Leck, C.D. Blaha, K.I. Matthaei, G.L. Forster, J. Holgate, and I.A. Hendry Gz proteins are functionally coupled to dopamine D2-like receptors in vivo Neuropharmacology 51 2006 597 605
-
(2006)
Neuropharmacology
, vol.51
, pp. 597-605
-
-
Leck, K.J.1
Blaha, C.D.2
Matthaei, K.I.3
Forster, G.L.4
Holgate, J.5
Hendry, I.A.6
-
39
-
-
77956495708
-
Transcriptional enhancers in animal development and evolution
-
M. Levine Transcriptional enhancers in animal development and evolution Curr. Biol. 20 2010 R754 R763
-
(2010)
Curr. Biol.
, vol.20
-
-
Levine, M.1
-
40
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
41
-
-
84655164920
-
Large-scale discovery of enhancers from human heart tissue
-
D. May, M.J. Blow, T. Kaplan, D.J. McCulley, B.C. Jensen, J.A. Akiyama, A. Holt, I. Plajzer-Frick, M. Shoukry, and C. Wright et al. Large-scale discovery of enhancers from human heart tissue Nat. Genet. 44 2012 89 93
-
(2012)
Nat. Genet.
, vol.44
, pp. 89-93
-
-
May, D.1
Blow, M.J.2
Kaplan, T.3
McCulley, D.J.4
Jensen, B.C.5
Akiyama, J.A.6
Holt, A.7
Plajzer-Frick, I.8
Shoukry, M.9
Wright, C.10
-
42
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
C.Y. McLean, D. Bristor, M. Hiller, S.L. Clarke, B.T. Schaar, C.B. Lowe, A.M. Wenger, and G. Bejerano GREAT improves functional interpretation of cis-regulatory regions Nat. Biotechnol. 28 2010 495 501
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
43
-
-
34748864128
-
A QTL influencing F cell production maps to a gene encoding a zinc-finger protein on chromosome 2p15
-
S. Menzel, C. Garner, I. Gut, F. Matsuda, M. Yamaguchi, S. Heath, M. Foglio, D. Zelenika, A. Boland, and H. Rooks et al. A QTL influencing F cell production maps to a gene encoding a zinc-finger protein on chromosome 2p15 Nat. Genet. 39 2007 1197 1199
-
(2007)
Nat. Genet.
, vol.39
, pp. 1197-1199
-
-
Menzel, S.1
Garner, C.2
Gut, I.3
Matsuda, F.4
Yamaguchi, M.5
Heath, S.6
Foglio, M.7
Zelenika, D.8
Boland, A.9
Rooks, H.10
-
44
-
-
33749361499
-
Gene regulatory networks in the evolution and development of the heart
-
E.N. Olson Gene regulatory networks in the evolution and development of the heart Science 313 2006 1922 1927
-
(2006)
Science
, vol.313
, pp. 1922-1927
-
-
Olson, E.N.1
-
45
-
-
0035261381
-
Genomic strategies to identify mammalian regulatory sequences
-
L.A. Pennacchio, and E.M. Rubin Genomic strategies to identify mammalian regulatory sequences Nat. Rev. Genet. 2 2001 100 109
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 100-109
-
-
Pennacchio, L.A.1
Rubin, E.M.2
-
46
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
L.A. Pennacchio, N. Ahituv, A.M. Moses, S. Prabhakar, M.A. Nobrega, M. Shoukry, S. Minovitsky, I. Dubchak, A. Holt, and K.D. Lewis et al. In vivo enhancer analysis of human conserved non-coding sequences Nature 444 2006 499 502
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
-
47
-
-
0034131122
-
Neuronal death and perinatal lethality in voltage-gated sodium channel alpha(II)-deficient mice
-
R. Planells-Cases, M. Caprini, J. Zhang, E.M. Rockenstein, R.R. Rivera, C. Murre, E. Masliah, and M. Montal Neuronal death and perinatal lethality in voltage-gated sodium channel alpha(II)-deficient mice Biophys. J. 78 2000 2878 2891
-
(2000)
Biophys. J.
, vol.78
, pp. 2878-2891
-
-
Planells-Cases, R.1
Caprini, M.2
Zhang, J.3
Rockenstein, E.M.4
Rivera, R.R.5
Murre, C.6
Masliah, E.7
Montal, M.8
-
48
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
A. Rada-Iglesias, R. Bajpai, T. Swigut, S.A. Brugmann, R.A. Flynn, and J. Wysocka A unique chromatin signature uncovers early developmental enhancers in humans Nature 470 2011 279 283
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
50
-
-
84860780495
-
De novo mutations revealed by whole-exome sequencing are strongly associated with autism
-
S.J. Sanders, M.T. Murtha, A.R. Gupta, J.D. Murdoch, M.J. Raubeson, A.J. Willsey, A.G. Ercan-Sencicek, N.M. DiLullo, N.N. Parikshak, and J.L. Stein et al. De novo mutations revealed by whole-exome sequencing are strongly associated with autism Nature 485 2012 237 241
-
(2012)
Nature
, vol.485
, pp. 237-241
-
-
Sanders, S.J.1
Murtha, M.T.2
Gupta, A.R.3
Murdoch, J.D.4
Raubeson, M.J.5
Willsey, A.J.6
Ercan-Sencicek, A.G.7
Dilullo, N.M.8
Parikshak, N.N.9
Stein, J.L.10
-
51
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Y. Shen, F. Yue, D.F. McCleary, Z. Ye, L. Edsall, S. Kuan, U. Wagner, J. Dixon, L. Lee, V.V. Lobanenkov, and B. Ren A map of the cis-regulatory sequences in the mouse genome Nature 488 2012 116 120
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
52
-
-
84861932338
-
Cis-regulatory control of corticospinal system development and evolution
-
S. Shim, K.Y. Kwan, M. Li, V. Lefebvre, and N. Sestan Cis-regulatory control of corticospinal system development and evolution Nature 486 2012 74 79
-
(2012)
Nature
, vol.486
, pp. 74-79
-
-
Shim, S.1
Kwan, K.Y.2
Li, M.3
Lefebvre, V.4
Sestan, N.5
-
53
-
-
76249102739
-
Organogenesis and development of the liver
-
K. Si-Tayeb, F.P. Lemaigre, and S.A. Duncan Organogenesis and development of the liver Dev. Cell 18 2010 175 189
-
(2010)
Dev. Cell
, vol.18
, pp. 175-189
-
-
Si-Tayeb, K.1
Lemaigre, F.P.2
Duncan, S.A.3
-
54
-
-
0031746740
-
Multiple coupling of human D5 dopamine receptors to guanine nucleotide binding proteins Gs and Gz
-
A. Sidhu, K. Kimura, M. Uh, B.H. White, and S. Patel Multiple coupling of human D5 dopamine receptors to guanine nucleotide binding proteins Gs and Gz J. Neurochem. 70 1998 2459 2467
-
(1998)
J. Neurochem.
, vol.70
, pp. 2459-2467
-
-
Sidhu, A.1
Kimura, K.2
Uh, M.3
White, B.H.4
Patel, S.5
-
55
-
-
84882766972
-
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes
-
A.B. Stergachis, S. Neph, A. Reynolds, R. Humbert, B. Miller, S.L. Paige, B. Vernot, J.B. Cheng, R.E. Thurman, and R. Sandstrom et al. Developmental fate and cellular maturity encoded in human regulatory DNA landscapes Cell 154 2013 888 903
-
(2013)
Cell
, vol.154
, pp. 888-903
-
-
Stergachis, A.B.1
Neph, S.2
Reynolds, A.3
Humbert, R.4
Miller, B.5
Paige, S.L.6
Vernot, B.7
Cheng, J.B.8
Thurman, R.E.9
Sandstrom, R.10
-
56
-
-
0028909220
-
Embryonic expression of the chicken Sox2, Sox3 and Sox11 genes suggests an interactive role in neuronal development
-
D. Uwanogho, M. Rex, E.J. Cartwright, G. Pearl, C. Healy, P.J. Scotting, and P.T. Sharpe Embryonic expression of the chicken Sox2, Sox3 and Sox11 genes suggests an interactive role in neuronal development Mech. Dev. 49 1995 23 36
-
(1995)
Mech. Dev.
, vol.49
, pp. 23-36
-
-
Uwanogho, D.1
Rex, M.2
Cartwright, E.J.3
Pearl, G.4
Healy, C.5
Scotting, P.J.6
Sharpe, P.T.7
-
57
-
-
38649123306
-
Ultraconservation identifies a small subset of extremely constrained developmental enhancers
-
A. Visel, S. Prabhakar, J.A. Akiyama, M. Shoukry, K.D. Lewis, A. Holt, I. Plajzer-Frick, V. Afzal, E.M. Rubin, and L.A. Pennacchio Ultraconservation identifies a small subset of extremely constrained developmental enhancers Nat. Genet. 40 2008 158 160
-
(2008)
Nat. Genet.
, vol.40
, pp. 158-160
-
-
Visel, A.1
Prabhakar, S.2
Akiyama, J.A.3
Shoukry, M.4
Lewis, K.D.5
Holt, A.6
Plajzer-Frick, I.7
Afzal, V.8
Rubin, E.M.9
Pennacchio, L.A.10
-
58
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
A. Visel, M.J. Blow, Z. Li, T. Zhang, J.A. Akiyama, A. Holt, I. Plajzer-Frick, M. Shoukry, C. Wright, and F. Chen et al. ChIP-seq accurately predicts tissue-specific activity of enhancers Nature 457 2009 854 858
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
59
-
-
84874118170
-
A high-resolution enhancer atlas of the developing telencephalon
-
A. Visel, L. Taher, H. Girgis, D. May, O. Golonzhka, R.V. Hoch, G.L. McKinsey, K. Pattabiraman, S.N. Silberberg, and M.J. Blow et al. A high-resolution enhancer atlas of the developing telencephalon Cell 152 2013 895 908
-
(2013)
Cell
, vol.152
, pp. 895-908
-
-
Visel, A.1
Taher, L.2
Girgis, H.3
May, D.4
Golonzhka, O.5
Hoch, R.V.6
McKinsey, G.L.7
Pattabiraman, K.8
Silberberg, S.N.9
Blow, M.J.10
-
60
-
-
84858779229
-
HaploReg: A resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
-
L.D. Ward, and M. Kellis HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants Nucleic Acids Res. 40 Database issue 2012 D930 D934
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.DATABASE ISSUE
-
-
Ward, L.D.1
Kellis, M.2
-
61
-
-
0017699030
-
Differential control of the synthesis of two hemoglobin beta chains in normal mice
-
J.B. Whitney 3rd Differential control of the synthesis of two hemoglobin beta chains in normal mice Cell 12 1977 863 871
-
(1977)
Cell
, vol.12
, pp. 863-871
-
-
Whitney III, J.B.1
-
62
-
-
0242668381
-
Hepatic lipase: A marker for cardiovascular disease risk and response to therapy
-
A. Zambon, S.S. Deeb, P. Pauletto, G. Crepaldi, and J.D. Brunzell Hepatic lipase: a marker for cardiovascular disease risk and response to therapy Curr. Opin. Lipidol. 14 2003 179 189
-
(2003)
Curr. Opin. Lipidol.
, vol.14
, pp. 179-189
-
-
Zambon, A.1
Deeb, S.S.2
Pauletto, P.3
Crepaldi, G.4
Brunzell, J.D.5
-
63
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Y. Zhang, T. Liu, C.A. Meyer, J. Eeckhoute, D.S. Johnson, B.E. Bernstein, C. Nusbaum, R.M. Myers, M. Brown, W. Li, and X.S. Liu Model-based analysis of ChIP-Seq (MACS) Genome Biol. 9 2008 R137
-
(2008)
Genome Biol.
, vol.9
, pp. 137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
64
-
-
17844371936
-
Embryonic development of the liver
-
R. Zhao, and S.A. Duncan Embryonic development of the liver Hepatology 41 2005 956 967
-
(2005)
Hepatology
, vol.41
, pp. 956-967
-
-
Zhao, R.1
Duncan, S.A.2
-
65
-
-
84873310426
-
Genome-wide chromatin state transitions associated with developmental and environmental cues
-
J. Zhu, M. Adli, J.Y. Zou, G. Verstappen, M. Coyne, X. Zhang, T. Durham, M. Miri, V. Deshpande, and P.L. De Jager et al. Genome-wide chromatin state transitions associated with developmental and environmental cues Cell 152 2013 642 654
-
(2013)
Cell
, vol.152
, pp. 642-654
-
-
Zhu, J.1
Adli, M.2
Zou, J.Y.3
Verstappen, G.4
Coyne, M.5
Zhang, X.6
Durham, T.7
Miri, M.8
Deshpande, V.9
De Jager, P.L.10
-
66
-
-
84882884517
-
Charting a dynamic DNA methylation landscape of the human genome
-
M.J. Ziller, H. Gu, F. Müller, J. Donaghey, L.T.-Y. Tsai, O. Kohlbacher, P.L. De Jager, E.D. Rosen, D.A. Bennett, and B.E. Bernstein et al. Charting a dynamic DNA methylation landscape of the human genome Nature 500 2013 477 481
-
(2013)
Nature
, vol.500
, pp. 477-481
-
-
Ziller, M.J.1
Gu, H.2
Müller, F.3
Donaghey, J.4
Tsai, L.T.-Y.5
Kohlbacher, O.6
De Jager, P.L.7
Rosen, E.D.8
Bennett, D.A.9
Bernstein, B.E.10
-
67
-
-
84855901401
-
-
Harvard Stem Cell Institute Cambridge, MA
-
A.M. Zorn Liver Development 2008 Harvard Stem Cell Institute Cambridge, MA
-
(2008)
Liver Development
-
-
Zorn, A.M.1
-
68
-
-
39049086371
-
Qualifying the relationship between sequence conservation and molecular function
-
G.M. Cooper, and C.D. Brown Qualifying the relationship between sequence conservation and molecular function Genome Res. 18 2008 201 205
-
(2008)
Genome Res.
, vol.18
, pp. 201-205
-
-
Cooper, G.M.1
Brown, C.D.2
-
69
-
-
22244452677
-
Distribution and intensity of constraint in mammalian genomic sequence
-
NISC Comparative Sequencing Program
-
G.M. Cooper, E.A. Stone, G. Asimenos, E.D. Green, S. Batzoglou, A. Sidow NISC Comparative Sequencing Program Distribution and intensity of constraint in mammalian genomic sequence Genome Res. 15 2005 901 913
-
(2005)
Genome Res.
, vol.15
, pp. 901-913
-
-
Cooper, G.M.1
Stone, E.A.2
Asimenos, G.3
Green, E.D.4
Batzoglou, S.5
Sidow, A.6
-
70
-
-
78651237647
-
Identifying a high fraction of the human genome to be under selective constraint using GERP++
-
E.V. Davydov, D.L. Goode, M. Sirota, G.M. Cooper, A. Sidow, and S. Batzoglou Identifying a high fraction of the human genome to be under selective constraint using GERP++ PLoS Comput. Biol. 6 2010 e1001025
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. 1001025
-
-
Davydov, E.V.1
Goode, D.L.2
Sirota, M.3
Cooper, G.M.4
Sidow, A.5
Batzoglou, S.6
-
71
-
-
80051992044
-
Using MACS to identify peaks from ChIP-Seq data
-
Unit2.14
-
J. Feng, T. Liu, and Y. Zhang Using MACS to identify peaks from ChIP-Seq data Curr Protoc Bioinformatics Chapter 2 2011 Unit2.14
-
(2011)
Curr Protoc Bioinformatics
, vol.2 CHAPTER
-
-
Feng, J.1
Liu, T.2
Zhang, Y.3
-
72
-
-
0032128201
-
Conspiracy of silence among repeated transgenes
-
S. Henikoff Conspiracy of silence among repeated transgenes Bioessays 20 1998 532 535
-
(1998)
Bioessays
, vol.20
, pp. 532-535
-
-
Henikoff, S.1
-
73
-
-
80052976954
-
ChIP-Seq: Technical considerations for obtaining high-quality data
-
B.L. Kidder, G. Hu, and K. Zhao ChIP-Seq: technical considerations for obtaining high-quality data Nat. Immunol. 12 2011 918 922
-
(2011)
Nat. Immunol.
, vol.12
, pp. 918-922
-
-
Kidder, B.L.1
Hu, G.2
Zhao, K.3
-
74
-
-
0033796352
-
Variegation associated with lacZ in transgenic animals: A warning note
-
L. Montoliu, S. Chávez, and M. Vidal Variegation associated with lacZ in transgenic animals: a warning note Transgenic Res. 9 2000 237 239
-
(2000)
Transgenic Res.
, vol.9
, pp. 237-239
-
-
Montoliu, L.1
Chávez, S.2
Vidal, M.3
-
75
-
-
0029874533
-
Age-dependent silencing of globin transgenes in the mouse
-
G. Robertson, D. Garrick, M. Wilson, D.I. Martin, and E. Whitelaw Age-dependent silencing of globin transgenes in the mouse Nucleic Acids Res. 24 1996 1465 1471
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1465-1471
-
-
Robertson, G.1
Garrick, D.2
Wilson, M.3
Martin, D.I.4
Whitelaw, E.5
-
76
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
A. Siepel, G. Bejerano, J.S. Pedersen, A.S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L.W. Hillier, and S. Richards et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes Genome Res. 15 2005 1034 1050
-
(2005)
Genome Res.
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
77
-
-
0036133289
-
Expression from a Dlx gene enhancer marks adult mouse cortical GABAergic neurons
-
T. Stühmer, L. Puelles, M. Ekker, and J.L.R. Rubenstein Expression from a Dlx gene enhancer marks adult mouse cortical GABAergic neurons Cereb. Cortex 12 2002 75 85
-
(2002)
Cereb. Cortex
, vol.12
, pp. 75-85
-
-
Stühmer, T.1
Puelles, L.2
Ekker, M.3
Rubenstein, J.L.R.4
-
78
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
C. Trapnell, B.A. Williams, G. Pertea, A. Mortazavi, G. Kwan, M.J. van Baren, S.L. Salzberg, B.J. Wold, and L. Pachter Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation Nat. Biotechnol. 28 2010 511 515
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
79
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
C. Trapnell, A. Roberts, L. Goff, G. Pertea, D. Kim, D.R. Kelley, H. Pimentel, S.L. Salzberg, J.L. Rinn, and L. Pachter Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Nat. Protoc. 7 2012 562 578
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
80
-
-
84867073340
-
Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage
-
J.A. Wamstad, J.M. Alexander, R.M. Truty, A. Shrikumar, F. Li, K.E. Eilertson, H. Ding, J.N. Wylie, A.R. Pico, and J.A. Capra et al. Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage Cell 151 2012 206 220
-
(2012)
Cell
, vol.151
, pp. 206-220
-
-
Wamstad, J.A.1
Alexander, J.M.2
Truty, R.M.3
Shrikumar, A.4
Li, F.5
Eilertson, K.E.6
Ding, H.7
Wylie, J.N.8
Pico, A.R.9
Capra, J.A.10
-
81
-
-
84873358694
-
Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
-
P. Yu, S. Xiao, X. Xin, C.-X. Song, W. Huang, D. McDee, T. Tanaka, T. Wang, C. He, and S. Zhong Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation Genome Res. 23 2013 352 364
-
(2013)
Genome Res.
, vol.23
, pp. 352-364
-
-
Yu, P.1
Xiao, S.2
Xin, X.3
Song, C.-X.4
Huang, W.5
McDee, D.6
Tanaka, T.7
Wang, T.8
He, C.9
Zhong, S.10
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