-
1
-
-
0033518234
-
From molecular to modular cell biology
-
COI: 1:CAS:528:DyaK1MXnslKms70%3D, PID: 10591225
-
Hartwell, L. H., Hopfield, J. J., Leibler, S., and Murray, A. W. (1999) From molecular to modular cell biology. Nature, 402, C47–C52.
-
(1999)
Nature
, vol.402
, pp. C47-C52
-
-
Hartwell, L.H.1
Hopfield, J.J.2
Leibler, S.3
Murray, A.W.4
-
2
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
COI: 1:CAS:528:DC%2BC38XhtlGnsbzN, PID: 22955616
-
Dunham, I., Kundaje, A., Aldred, S. F., Collins, P. J., Davis, C. A., Doyle, F., Epstein, C. B., Frietze, S., Harrow, J., Kaul, R., et al. and the ENCODE Project Consortium. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57–74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.A.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
-
3
-
-
0346799108
-
Prediction of protein function from protein sequence and structure
-
COI: 1:CAS:528:DC%2BD2cXmtlSjsw%3D%3D, PID: 15029827
-
Whisstock, J. C. and Lesk, A. M. (2003) Prediction of protein function from protein sequence and structure. Q. Rev. Biophys., 36, 307–340.
-
(2003)
Q. Rev. Biophys.
, vol.36
, pp. 307-340
-
-
Whisstock, J.C.1
Lesk, A.M.2
-
4
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
PID: 10688190
-
Fields, S. Uetz, P. Giot, L. Cagney, G. Mansfield, T. A. Judson, R. S. Knight, J. R. Lockshon, D. Narayan, V. Srinivasan, M. et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature, 403, 623–627.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Fields, S.1
Uetz, P.2
Giot, L.3
Cagney, G.4
Mansfield, T.A.5
Judson, R.S.6
Knight, J.R.7
Lockshon, D.8
Narayan, V.9
Srinivasan, M.10
-
5
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
COI: 1:CAS:528:DC%2BD3MXjtVagtLc%3D, PID: 11283351
-
Ito, T. Chiba, T. Ozawa, R. Yoshida, M. Hattori, M. and Sakaki, Y. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. U.S.A., 98, 4569–4574.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
6
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
COI: 1:CAS:528:DC%2BD2cXlt1emtA%3D%3D, PID: 14704431
-
Li, S. Armstrong, C. M. Bertin, N. Ge, H. Milstein, S. Boxem, M. Vidalain, P. O. Han, J. D. Chesneau, A. Hao, T. et al. (2004) A map of the interactome network of the metazoan C. elegans. Science, 303, 540–543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
-
7
-
-
27144530248
-
Towards a proteome-scale map of the human proteinprotein interaction network
-
COI: 1:CAS:528:DC%2BD2MXhtFahtLzP, PID: 16189514
-
Rual, J.-F. Venkatesan, K. Hao, T. Hirozane-Kishikawa, T. Dricot, A. Li, N. Berriz, G. F. Gibbons, F. D. Dreze, M. Ayivi-Guedehoussou, N. et al. (2005) Towards a proteome-scale map of the human proteinprotein interaction network. Nature, 437, 1173–1178.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.-F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
-
8
-
-
80054732652
-
Analysis of protein-protein interactions using high-throughput yeast two-hybrid screens
-
COI: 1:CAS:528:DC%2BC38XhvVClsb%2FN, PID: 21877274
-
Rajagopala, S. V. and Uetz, P. (2011) Analysis of protein-protein interactions using high-throughput yeast two-hybrid screens. Methods Mol. Biol., 781, 1–29.
-
(2011)
Methods Mol. Biol.
, vol.781
, pp. 1-29
-
-
Rajagopala, S.V.1
Uetz, P.2
-
9
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
COI: 1:CAS:528:DC%2BD28XivFWgtbw%3D, PID: 16429126
-
Gavin, A. C. Aloy, P. Grandi, P. Krause, R. Boesche, M. Marzioch, M. Rau, C. Jensen, L. J. Bastuck, S. Dümpelfeld, B. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature, 440, 631–636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dümpelfeld, B.10
-
10
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
COI: 1:CAS:528:DC%2BD28XivFWgurc%3D, PID: 16554755
-
Krogan, N. J. Cagney, G. Yu, H. Zhong, G. Guo, X. Ignatchenko, A. Li, J. Pu, S. Datta, N. Tikuisis, A. P. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature, 440, 637–643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
-
11
-
-
55749093288
-
Physical protein-protein interactions predicted from microarrays
-
COI: 1:CAS:528:DC%2BD1cXhtlGht7%2FE, PID: 18829707
-
Soong, T. T. Wrzeszczynski, K. O. and Rost, B. (2008) Physical protein-protein interactions predicted from microarrays. Bioinformatics, 24, 2608–2614.
-
(2008)
Bioinformatics
, vol.24
, pp. 2608-2614
-
-
Soong, T.T.1
Wrzeszczynski, K.O.2
Rost, B.3
-
12
-
-
59649088355
-
Patterns of co-expression for protein complexes by size in Saccharomyces cerevisiae
-
COI: 1:CAS:528:DC%2BD1MXhtlGksrw%3D, PID: 19056822
-
Liu, C. T., Yuan, S. and Li, K. C. (2009) Patterns of co-expression for protein complexes by size in Saccharomyces cerevisiae. Nucleic Acids Res., 37, 526–532.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 526-532
-
-
Liu, C.T.1
Yuan, S.2
Li, K.C.3
-
13
-
-
0347755535
-
The database of interacting Proteins: 2004 update
-
COI: 1:CAS:528:DC%2BD3sXhtVSrurnJ, PID: 14681454
-
Salwinski, L. Miller, C. S. Smith, A. J. Pettit, F. K. Bowie, J. U. and Eisenberg, D. (2004) The database of interacting Proteins: 2004 update. Nucleic Acids Res., 32, D449–D451.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D449-D451
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
14
-
-
84860918589
-
MINT the molecular interaction database: 2012 update
-
COI: 1:CAS:528:DC%2BC3MXhs12hurbE, PID: 22096227
-
Licata, L. Briganti, L. Peluso, D. Perfetto, L. Iannuccelli, M. Galeota, E. Sacco, F. Palma, A. Nardozza, A. P. Santonico, E. et al. (2012) MINT the molecular interaction database: 2012 update. Nucleic Acids Res., 40, D857–D861.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D857-D861
-
-
Licata, L.1
Briganti, L.2
Peluso, D.3
Perfetto, L.4
Iannuccelli, M.5
Galeota, E.6
Sacco, F.7
Palma, A.8
Nardozza, A.P.9
Santonico, E.10
-
15
-
-
58149193222
-
Human Protein Reference Database-2009 update
-
COI: 1:STN:280:DC%2BD1M%2FitVCluw%3D%3D, PID: 18988627
-
Keshava Prasad, T. S. Goel, R. Kandasamy, K. Keerthikumar, S. Kumar, S. Mathivanan, S. Telikicherla, D. Raju, R. Shafreen, B. Venugopal, A. et al. (2009) Human Protein Reference Database-2009 update. Nucleic Acids Res., 37, D767–D772.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D767-D772
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
-
16
-
-
78651328883
-
The BioGRID Interaction Database: 2011 update
-
COI: 1:CAS:528:DC%2BC3sXivF2lsrk%3D, PID: 21071413
-
Stark, C. Breitkreutz, B. J. Chatr-Aryamontri, A. Boucher, L. Oughtred, R. Livstone, M. S. Nixon, J. Van Auken, K. Wang, X. Shi, X. et al. (2011) The BioGRID Interaction Database: 2011 update. Nucleic Acids Res., 39, D698–D704.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D698-D704
-
-
Stark, C.1
Breitkreutz, B.J.2
Chatr-Aryamontri, A.3
Boucher, L.4
Oughtred, R.5
Livstone, M.S.6
Nixon, J.7
Van Auken, K.8
Wang, X.9
Shi, X.10
-
17
-
-
43349092205
-
Searching viewing and visualizing data in the Biomolecular Interaction Network Database (BIND) Curr
-
Willis, R. C. and Hogue, C. W. (2006) Searching viewing and visualizing data in the Biomolecular Interaction Network Database (BIND) Curr. Protoc. Bioinformatics, 8.9.1–8.9.30.
-
(2006)
Protoc. Bioinformatics
, pp. 8.9.1-8.9.30
-
-
Willis, R.C.1
Hogue, C.W.2
-
18
-
-
84859204939
-
The IntAct molecular interaction database in 2012
-
COI: 1:CAS:528:DC%2BC3MXhs12htbvI, PID: 22121220
-
Kerrien, S. Aranda, B. Breuza, L. Bridge, A. Broackes-Carter, F. Chen, C. Duesbury, M. Dumousseau, M. Feuermann, M. Hinz, U. et al. (2012) The IntAct molecular interaction database in 2012. Nucleic Acids Res., 40, D841–D846.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D841-D846
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
Duesbury, M.7
Dumousseau, M.8
Feuermann, M.9
Hinz, U.10
-
19
-
-
0035799707
-
Lethality and centrality in protein networks
-
COI: 1:CAS:528:DC%2BD3MXjsFGnsLY%3D, PID: 11333967
-
Jeong, H. Mason, S. P. Barabási, A.-L. and Oltvai, Z. N. (2001) Lethality and centrality in protein networks. Nature, 411, 41–42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.-L.3
Oltvai, Z.N.4
-
20
-
-
0038513959
-
Scale-free networks
-
PID: 12701331
-
Barabási, A.-L. and Bonabeau, E. (2003) Scale-free networks. Sci. Am., 288, 60–69.
-
(2003)
Sci. Am.
, vol.288
, pp. 60-69
-
-
Barabási, A.-L.1
Bonabeau, E.2
-
21
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast proteinprotein interaction network
-
COI: 1:CAS:528:DC%2BD2cXlt1Cqt7s%3D, PID: 15190252
-
Han, J.-D. Bertin, N. Hao, T. Goldberg, D. S. Berriz, G. F. Zhang, L. V. Dupuy, D. Walhout, A. J. Cusick, M. E. Roth, F. P. et al. (2004) Evidence for dynamically organized modularity in the yeast proteinprotein interaction network. Nature, 430, 88–93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.-D.1
Bertin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
Zhang, L.V.6
Dupuy, D.7
Walhout, A.J.8
Cusick, M.E.9
Roth, F.P.10
-
22
-
-
1842580761
-
Functional and topological characterization of protein interaction networks
-
COI: 1:CAS:528:DC%2BD2cXjt1Smtrc%3D, PID: 15048975
-
Yook, S. H. Oltvai, Z. N. and Barabási, A. L. (2004) Functional and topological characterization of protein interaction networks. Proteomics, 4, 928–942.
-
(2004)
Proteomics
, vol.4
, pp. 928-942
-
-
Yook, S.H.1
Oltvai, Z.N.2
Barabási, A.L.3
-
23
-
-
33646687963
-
A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration
-
COI: 1:CAS:528:DC%2BD28XltlSkt7c%3D, PID: 16713569
-
Lim, J. Hao, T. Shaw, C. Patel, A. J. Szabá, G. Rual, J. F. Fisk, C. J. Li, N. Smolyar, A. Hill, D. E. et al. (2006) A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. Cell, 125, 801–814.
-
(2006)
Cell
, vol.125
, pp. 801-814
-
-
Lim, J.1
Hao, T.2
Shaw, C.3
Patel, A.J.4
Szabá, G.5
Rual, J.F.6
Fisk, C.J.7
Li, N.8
Smolyar, A.9
Hill, D.E.10
-
24
-
-
36949000237
-
Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
-
PID: 18039026
-
Huang, H. Jedynak, B. M. and Bader, J. S. (2007) Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps. PLoS Comput. Biol., 3, e214.
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Huang, H.1
Jedynak, B.M.2
Bader, J.S.3
-
25
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
COI: 1:CAS:528:DC%2BD38Xjt1Kns70%3D, PID: 11967538
-
Shen-Orr, S. S. Milo, R. Mangan, S. and Alon, U. (2002) Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet., 31, 64–68.
-
(2002)
Nat. Genet.
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
26
-
-
0037174670
-
Network motifs: simple building blocks of complex networks
-
COI: 1:CAS:528:DC%2BD38XotFSntb4%3D, PID: 12399590
-
Milo, R. Shen-Orr, S. Itzkovitz, S. Kashtan, N. Chklovskii, D. and Alon, U. (2002) Network motifs: simple building blocks of complex networks. Science, 298, 824–827.
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
Alon, U.6
-
27
-
-
11144234660
-
Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae
-
COI: 1:CAS:528:DC%2BD2MXjsl2guw%3D%3D, PID: 15608068
-
Said, M. R. Begley, T. J. Oppenheim, A. V. Lauffenburger, D. A. and Samson, L. D. (2004) Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U.S.A., 101, 18006–18011.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 18006-18011
-
-
Said, M.R.1
Begley, T.J.2
Oppenheim, A.V.3
Lauffenburger, D.A.4
Samson, L.D.5
-
28
-
-
42949168427
-
A systems-level approach to mapping the telomere-length maintenance gene circuitry Mol
-
Shachar, R. Unger, L. Kupiec, M. Ruppin, R. and Sharan, R. (2008) A systems-level approach to mapping the telomere-length maintenance gene circuitry Mol. Syst. Biol., 4, 172.
-
(2008)
Syst. Biol.
, vol.4
, pp. 172
-
-
Shachar, R.1
Unger, L.2
Kupiec, M.3
Ruppin, R.4
Sharan, R.5
-
29
-
-
28444448000
-
Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues
-
COI: 1:CAS:528:DC%2BD2MXht1Gltr7M, PID: 16188928
-
Wachi, S. Yoneda, K. and Wu, R. (2005) Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues. Bioinformatics, 21, 4205–4208.
-
(2005)
Bioinformatics
, vol.21
, pp. 4205-4208
-
-
Wachi, S.1
Yoneda, K.2
Wu, R.3
-
30
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
COI: 1:CAS:528:DC%2BD28Xps1ynsrk%3D, PID: 16844706
-
Jonsson, P. F. and Bates, P. A. (2006) Global topological features of cancer proteins in the human interactome. Bioinformatics, 22, 2291–2297.
-
(2006)
Bioinformatics
, vol.22
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
31
-
-
34547140875
-
The human disease network
-
COI: 1:CAS:528:DC%2BD2sXmt1Wisbg%3D, PID: 17502601
-
Goh, K. I. Cusick, M. E. Valle, D. Childs, B. Vidal, M. and Barabási, A. L. (2007) The human disease network. Proc. Natl. Acad. Sci. U.S. A., 104, 8685–8690.
-
(2007)
Proc. Natl. Acad. Sci. U.S. A.
, vol.104
, pp. 8685-8690
-
-
Goh, K.I.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
Vidal, M.5
Barabási, A.L.6
-
32
-
-
31744440828
-
Protein-protein interaction assays: eliminating false positive interactions
-
COI: 1:CAS:528:DC%2BD28Xmtl2lsQ%3D%3D, PID: 16432524
-
Nguyen, T. N. and Goodrich, J. A. (2006) Protein-protein interaction assays: eliminating false positive interactions. Nat. Methods, 3, 135–139.
-
(2006)
Nat. Methods
, vol.3
, pp. 135-139
-
-
Nguyen, T.N.1
Goodrich, J.A.2
-
33
-
-
66149167455
-
ChIP-based methods for the identification of long-range chromatin interactions
-
COI: 1:CAS:528:DC%2BD1MXlsFymtLo%3D, PID: 19247990
-
Fullwood, M. J. and Ruan, Y. (2009) ChIP-based methods for the identification of long-range chromatin interactions. J. Cell. Biochem., 107, 30–39.
-
(2009)
J. Cell. Biochem.
, vol.107
, pp. 30-39
-
-
Fullwood, M.J.1
Ruan, Y.2
-
34
-
-
58149213932
-
Literature-curated protein interaction datasets
-
COI: 1:CAS:528:DC%2BD1cXhsFCkurjF, PID: 19116613
-
Cusick, M. E. Yu, H. Smolyar, A. Venkatesan, K. Carvunis, A. R. Simonis, N. Rual, J. F. Borick, H. Braun, P. Dreze, M. et al. (2009) Literature-curated protein interaction datasets. Nat. Methods 6, 39–46.
-
(2009)
Nat. Methods
, vol.6
, pp. 39-46
-
-
Cusick, M.E.1
Yu, H.2
Smolyar, A.3
Venkatesan, K.4
Carvunis, A.R.5
Simonis, N.6
Rual, J.F.7
Borick, H.8
Braun, P.9
Dreze, M.10
-
35
-
-
85042797013
-
X-ray crystallography as a tool for mechanism-ofaction studies and drug discovery
-
Ennifar, E. (2012) X-ray crystallography as a tool for mechanism-ofaction studies and drug discovery. Curr. Pharm. Biotechnol., PMID: 22429136
-
(2012)
Curr. Pharm. Biotechnol.
-
-
Ennifar, E.1
-
36
-
-
79960125660
-
Advances in automated NMR protein structure determination
-
COI: 1:CAS:528:DC%2BC3MXot1ans7k%3D, PID: 21411039
-
Guerry, P. and Herrmann, T. (2011) Advances in automated NMR protein structure determination. Q. Rev. Biophys., 44, 257–309.
-
(2011)
Q. Rev. Biophys.
, vol.44
, pp. 257-309
-
-
Guerry, P.1
Herrmann, T.2
-
37
-
-
79959668319
-
Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects
-
COI: 1:CAS:528:DC%2BC3MXmtFClt7s%3D, PID: 21575566
-
Glaeser, R.M. and Hall, R. J. (2011) Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects. Biophys. J., 100, 2331–2337.
-
(2011)
Biophys. J.
, vol.100
, pp. 2331-2337
-
-
Glaeser, R.M.1
Hall, R.J.2
-
38
-
-
0033954256
-
The protein data bank
-
COI: 1:CAS:528:DC%2BD3cXhvVKjt7w%3D, PID: 10592235
-
Berman, H. M. Westbrook, J. Feng, Z. Gilliland, G. Bhat, T. N. Weissig, H. Shindyalov, I. N. and Bourne, P. E. (2000) The protein data bank. Nucleic Acids Res., 28, 235–242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
39
-
-
17044375934
-
Molecular recognition in organic crystals: directed intermolecular bonds or nonlocalized bonding?
-
COI: 1:CAS:528:DC%2BD2MXislWkt78%3D, PID: 15685679
-
Dunitz, J. D. and Gavezzotti, A. (2005) Molecular recognition in organic crystals: directed intermolecular bonds or nonlocalized bonding? Angew. Chem. Int. Ed. Engl., 44, 1766–1787.
-
(2005)
Angew. Chem. Int. Ed. Engl.
, vol.44
, pp. 1766-1787
-
-
Dunitz, J.D.1
Gavezzotti, A.2
-
40
-
-
0038526303
-
ZDOCK: an initial-stage proteindocking algorithm
-
COI: 1:CAS:528:DC%2BD3sXkslahs7w%3D, PID: 12784371
-
Chen, R., Li, L. and Weng, Z. (2003) ZDOCK: an initial-stage proteindocking algorithm. Proteins, 52, 80–87.
-
(2003)
Proteins
, vol.52
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
41
-
-
33749020839
-
PIPER: an FFT-based protein docking program with pairwise potentials
-
COI: 1:CAS:528:DC%2BD28XhtVCjtr%2FM, PID: 16933295
-
Kozakov, D. Brenke, R. Comeau, S. R. and Vajda, S. (2006) PIPER: an FFT-based protein docking program with pairwise potentials. Proteins, 65, 392–406.
-
(2006)
Proteins
, vol.65
, pp. 392-406
-
-
Kozakov, D.1
Brenke, R.2
Comeau, S.R.3
Vajda, S.4
-
42
-
-
77957963055
-
Achieving reliability and high accuracy in automated protein docking: Cluspro PIPER SDU and stability analysis in CAPRI rounds 13–19, Proteins
-
COI: 1:CAS:528:DC%2BC3cXhsVSqsbrM, PID: 20818657
-
Kozakov, D. Hall, D. R. Beglov, D. Brenke, R. Comeau, S. R. Shen, Y. Li, K. Zheng, J. Vakili, P. Paschalidis, I. C. et al. (2010) Achieving reliability and high accuracy in automated protein docking: Cluspro PIPER SDU and stability analysis in CAPRI rounds 13–19, Proteins. Proteins, 78, 3124–3130.
-
(2010)
Proteins
, vol.78
, pp. 3124-3130
-
-
Kozakov, D.1
Hall, D.R.2
Beglov, D.3
Brenke, R.4
Comeau, S.R.5
Shen, Y.6
Li, K.7
Zheng, J.8
Vakili, P.9
Paschalidis, I.C.10
-
43
-
-
77955391393
-
The HADDOCK web server for data-driven biomolecular docking
-
PID: 20431534
-
de Vries, S. J. van Dijk, M. and Bonvin, A. M. (2010) The HADDOCK web server for data-driven biomolecular docking. Nat. Protoc., 5, 883–897.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 883-897
-
-
de Vries, S.J.1
van Dijk, M.2
Bonvin, A.M.3
-
44
-
-
48449105393
-
The RosettaDock server for local protein-protein docking
-
COI: 1:CAS:528:DC%2BD1cXptlKkurs%3D, PID: 18442991
-
Lyskov, S. and Gray, J. J. (2008) The RosettaDock server for local protein-protein docking. Nucleic Acids Res., 36, W233–8.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W233-W238
-
-
Lyskov, S.1
Gray, J.J.2
-
45
-
-
21644476468
-
PatchDock and SymmDock: servers for rigid and symmetric docking
-
COI: 1:CAS:528:DC%2BD2MXlslyqtbo%3D, PID: 15980490
-
Schneidman-Duhovny, D. Inbar, Y. Nussinov, R. and Wolfson, H. J. (2005) PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res., 33, W363–7.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W363-W367
-
-
Schneidman-Duhovny, D.1
Inbar, Y.2
Nussinov, R.3
Wolfson, H.J.4
-
47
-
-
0037197902
-
Interrogating protein interaction networks through structural biology
-
COI: 1:CAS:528:DC%2BD38XjslWgtLc%3D, PID: 11972061
-
Aloy, P. and Russell, R. B. (2002) Interrogating protein interaction networks through structural biology. Proc. Natl. Acad. Sci. U.S.A., 99, 5896–5901.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 5896-5901
-
-
Aloy, P.1
Russell, R.B.2
-
48
-
-
0037250158
-
InterPreTS: protein interaction prediction through tertiary structure
-
COI: 1:CAS:528:DC%2BD3sXltF2rtw%3D%3D, PID: 12499311
-
Aloy, P. and Russell, R. B. (2003) InterPreTS: protein interaction prediction through tertiary structure. Bioinformatics, 19, 161–162.
-
(2003)
Bioinformatics
, vol.19
, pp. 161-162
-
-
Aloy, P.1
Russell, R.B.2
-
49
-
-
48749087342
-
Homologybased modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles
-
COI: 1:CAS:528:DC%2BD1cXptVSrs7Y%3D, PID: 18572239
-
Kundrotas, P. J. Lensink, M. F. and Alexov, E. (2008) Homologybased modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. Int. J. Biol. Macromol., 43, 198–208.
-
(2008)
Int. J. Biol. Macromol.
, vol.43
, pp. 198-208
-
-
Kundrotas, P.J.1
Lensink, M.F.2
Alexov, E.3
-
50
-
-
84867881743
-
Structure-based prediction of protein-protein interactions on a genome-wide scale
-
COI: 1:CAS:528:DC%2BC38XhsVaqtb7P, PID: 23023127
-
Zhang, Q. C. Petrey, D. Deng, L. Qiang, L. Shi, Y. Thu, C. A. Bisikirska, B. Lefebvre, C. Accili, D. Hunter, T. et al. (2012) Structure-based prediction of protein-protein interactions on a genome-wide scale. Nature, 490, 556–560.
-
(2012)
Nature
, vol.490
, pp. 556-560
-
-
Zhang, Q.C.1
Petrey, D.2
Deng, L.3
Qiang, L.4
Shi, Y.5
Thu, C.A.6
Bisikirska, B.7
Lefebvre, C.8
Accili, D.9
Hunter, T.10
-
51
-
-
23144463510
-
PRISM: protein interactions by structural matching
-
COI: 1:CAS:528:DC%2BD2MXlslyqu7o%3D, PID: 15991339
-
Ogmen, U. Keskin, O. Aytuna, A. S. Nussinov, R. and Gursoy, A. (2005) PRISM: protein interactions by structural matching. Nucleic Acids Res., 33, W331–6.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W331-W336
-
-
Ogmen, U.1
Keskin, O.2
Aytuna, A.S.3
Nussinov, R.4
Gursoy, A.5
-
52
-
-
36749058849
-
Docking without docking: ISEARCH-prediction of interactions using known interfaces
-
PID: 17803236
-
Gunther, S. May, P. Hoppe, A. Frommel, C. and Preissner, R. (2007) Docking without docking: ISEARCH-prediction of interactions using known interfaces. Proteins, 69, 839–844.
-
(2007)
Proteins
, vol.69
, pp. 839-844
-
-
Gunther, S.1
May, P.2
Hoppe, A.3
Frommel, C.4
Preissner, R.5
-
53
-
-
77957959671
-
Docking by structural similarity at protein-protein interfaces
-
COI: 1:CAS:528:DC%2BC3cXhsVSqsbvI, PID: 20715056
-
Sinha, R. Kundrotas, P. J. and Vakser, I. A. (2010) Docking by structural similarity at protein-protein interfaces. Proteins, 78, 3235–3241.
-
(2010)
Proteins
, vol.78
, pp. 3235-3241
-
-
Sinha, R.1
Kundrotas, P.J.2
Vakser, I.A.3
-
54
-
-
84856430102
-
Homology inference of protein-protein interactions via conserved binding sites
-
COI: 1:CAS:528:DC%2BC38XisV2mtLo%3D, PID: 22303436
-
Tyagi, M. Thangudu, R. R. Zhang, D. Bryant, S. H. Madej, T. and Panchenko, A. R. (2012) Homology inference of protein-protein interactions via conserved binding sites. PLoS ONE, 7, e28896.
-
(2012)
PLoS ONE
, vol.7
-
-
Tyagi, M.1
Thangudu, R.R.2
Zhang, D.3
Bryant, S.H.4
Madej, T.5
Panchenko, A.R.6
-
55
-
-
0242284421
-
A simple dependence between protein evolution rate and the number of protein-protein interactions
-
PID: 12769820
-
Fraser, H. B. Wall, D. P. and Hirsh, A. E. (2003) A simple dependence between protein evolution rate and the number of protein-protein interactions. BMC Evol. Biol., 3, 11.
-
(2003)
BMC Evol. Biol.
, vol.3
, pp. 11
-
-
Fraser, H.B.1
Wall, D.P.2
Hirsh, A.E.3
-
56
-
-
16844363315
-
Modularity and evolutionary constraint on proteins
-
COI: 1:CAS:528:DC%2BD2MXislCmur0%3D, PID: 15750592
-
Fraser, H. B. (2005) Modularity and evolutionary constraint on proteins. Nat. Genet., 37, 351–352.
-
(2005)
Nat. Genet.
, vol.37
, pp. 351-352
-
-
Fraser, H.B.1
-
57
-
-
70349330141
-
Evolutionary conservation in multiple faces of protein interaction
-
COI: 1:CAS:528:DC%2BD1MXhtVChtLnJ, PID: 19350617
-
Choi, Y. S. Yang, J. S. Choi, Y. Ryu, S. H. and Kim, S. (2009) Evolutionary conservation in multiple faces of protein interaction. Proteins, 77, 14–25.
-
(2009)
Proteins
, vol.77
, pp. 14-25
-
-
Choi, Y.S.1
Yang, J.S.2
Choi, Y.3
Ryu, S.H.4
Kim, S.5
-
58
-
-
80054034777
-
Accuracy of functional surfaces on comparatively modeled protein structures
-
COI: 1:CAS:528:DC%2BC3MXotVaqtb8%3D, PID: 21541664
-
Zhao, J. Dundas, J. Kachalo, S. Ouyang, Z. and Liang, J. (2011) Accuracy of functional surfaces on comparatively modeled protein structures. J. Struct. Funct. Genomics, 12, 97–107.
-
(2011)
J. Struct. Funct. Genomics
, vol.12
, pp. 97-107
-
-
Zhao, J.1
Dundas, J.2
Kachalo, S.3
Ouyang, Z.4
Liang, J.5
-
59
-
-
69149083388
-
Predicting weakly stable regions oligomerization state and protein-protein interfaces in transmembrane domains of outer membrane proteins
-
COI: 1:CAS:528:DC%2BD1MXhtVKltrfJ, PID: 19622743
-
Naveed, H. Jackups, R. Jr and Liang, J. (2009) Predicting weakly stable regions oligomerization state and protein-protein interfaces in transmembrane domains of outer membrane proteins. Proc. Natl. Acad. Sci. U. S. A., 106, 12735–12740.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 12735-12740
-
-
Naveed, H.1
Jackups, R.2
Liang, J.3
-
60
-
-
70449408309
-
Predicting protein-protein binding sites in membrane proteins
-
PID: 19778442
-
Bordner, A. J. (2009) Predicting protein-protein binding sites in membrane proteins. BMC Bioinformatics, 10, 312.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 312
-
-
Bordner, A.J.1
-
61
-
-
80053324844
-
Improving the resistance of a eukaryotic β-barrel protein to thermal and chemical perturbations
-
COI: 1:CAS:528:DC%2BC3MXht1GrtrzJ, PID: 21835183
-
Gessmann, D. Mager, F. Naveed, H. Arnold, T. Weirich, S. Linke, D. Liang, J. and Nussberger, S. (2011) Improving the resistance of a eukaryotic β-barrel protein to thermal and chemical perturbations. J. Mol. Biol., 413, 150–161.
-
(2011)
J. Mol. Biol.
, vol.413
, pp. 150-161
-
-
Gessmann, D.1
Mager, F.2
Naveed, H.3
Arnold, T.4
Weirich, S.5
Linke, D.6
Liang, J.7
Nussberger, S.8
-
62
-
-
84855827850
-
Structure-based analysis of VDAC1 protein: defining oligomer contact sites
-
COI: 1:CAS:528:DC%2BC38XmtlKjsw%3D%3D, PID: 22117062
-
Geula, S. Naveed, H. Liang, J. and Shoshan-Barmatz, V. (2012) Structure-based analysis of VDAC1 protein: defining oligomer contact sites. J. Biol. Chem., 287, 2179–2190.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 2179-2190
-
-
Geula, S.1
Naveed, H.2
Liang, J.3
Shoshan-Barmatz, V.4
-
63
-
-
84860286110
-
Engineered oligomerization state of OmpF protein through computational design decouples oligomer dissociation from unfolding
-
COI: 1:CAS:528:DC%2BC38Xkt1yntbg%3D, PID: 22391420
-
Naveed, H. Jimenez-Morales, D. Tian, J. Pasupuleti, V. Kenney, L. J. and Liang, J. (2012) Engineered oligomerization state of OmpF protein through computational design decouples oligomer dissociation from unfolding. J. Mol. Biol., 419, 89–101.
-
(2012)
J. Mol. Biol.
, vol.419
, pp. 89-101
-
-
Naveed, H.1
Jimenez-Morales, D.2
Tian, J.3
Pasupuleti, V.4
Kenney, L.J.5
Liang, J.6
-
64
-
-
84880812194
-
TMBB-Explorer: A Webserver to Predict the Structure, Oligomerization State PPI Interface and Thermodynamic Properties of the Transmembrane Domains of Outer Membrane Proteins
-
Naveed, H. and Liang, J. (2012) TMBB-Explorer: A Webserver to Predict the Structure, Oligomerization State PPI Interface and Thermodynamic Properties of the Transmembrane Domains of Outer Membrane Proteins. Biophys. J., 102, 469a.
-
(2012)
Biophys. J.
, vol.102
, pp. 469a
-
-
Naveed, H.1
Liang, J.2
-
65
-
-
0027053611
-
POCKET: a computer graphics method for identifying and displaying protein cavities and their surrounding amino acids
-
Levitt, D. G. and Banaszak, L. J. (1992) POCKET: a computer graphics method for identifying and displaying protein cavities and their surrounding amino acids. J. Mol. Graph., 10, 174–177.
-
(1992)
J. Mol. Graph.
, vol.10
, pp. 174-177
-
-
Levitt, D.G.1
Banaszak, L.J.2
-
66
-
-
33747818007
-
CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
-
COI: 1:CAS:528:DC%2BD28Xps1yhtrw%3D, PID: 16844972
-
Dundas, J. Ouyang, Z. Tseng, J. Binkowski, A. Turpaz, Y. and Liang, J. (2006) CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res., 34, W116–8.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W116-W118
-
-
Dundas, J.1
Ouyang, Z.2
Tseng, J.3
Binkowski, A.4
Turpaz, Y.5
Liang, J.6
-
67
-
-
34547583152
-
Transient pockets on protein surfaces involved in protein-protein interaction
-
COI: 1:CAS:528:DC%2BD2sXnsV2rs78%3D, PID: 17602601
-
Eyrisch, S. and Helms, V. (2007) Transient pockets on protein surfaces involved in protein-protein interaction. J. Med. Chem., 50, 3457–3464.
-
(2007)
J. Med. Chem.
, vol.50
, pp. 3457-3464
-
-
Eyrisch, S.1
Helms, V.2
-
68
-
-
84857784008
-
IBIS (Inferred Biomolecular Interaction Server) reports predicts and integrates multiple types of conserved interactions for proteins
-
COI: 1:CAS:528:DC%2BC3MXhs12hurjI, PID: 22102591
-
Shoemaker, B. A. Zhang, D. Tyagi, M. Thangudu, R. R. Fong, J. H. Marchler-Bauer, A. Bryant, S. H. Madej, T. and Panchenko, A. R. (2012) IBIS (Inferred Biomolecular Interaction Server) reports predicts and integrates multiple types of conserved interactions for proteins. Nucleic Acids Res., 40, D834–D840.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D834-D840
-
-
Shoemaker, B.A.1
Zhang, D.2
Tyagi, M.3
Thangudu, R.R.4
Fong, J.H.5
Marchler-Bauer, A.6
Bryant, S.H.7
Madej, T.8
Panchenko, A.R.9
-
69
-
-
0342424187
-
Fast prediction and visualization of protein binding pockets with PASS
-
COI: 1:CAS:528:DC%2BD3cXjt1GrtLs%3D, PID: 10815774
-
Brady, G. P. Jr and Stouten, P. F. W. (2000) Fast prediction and visualization of protein binding pockets with PASS. J. Comput. Aided Mol. Des., 14, 383–401.
-
(2000)
J. Comput. Aided Mol. Des.
, vol.14
, pp. 383-401
-
-
Brady, G.P.1
Stouten, P.F.W.2
-
70
-
-
0034609791
-
The large-scale organization of metabolic networks
-
COI: 1:CAS:528:DC%2BD3cXnsVOrsLs%3D, PID: 11034217
-
Jeong, H. Tombor, B. Albert, R. Oltvai, Z. N. and Barabási, A.-L. (2000) The large-scale organization of metabolic networks. Nature, 407, 651–654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabási, A.-L.5
-
71
-
-
78650209059
-
Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces cerevisiae
-
PID: 21167069
-
Mirzarezaee, M. Araabi, B. N. and Sadeghi, M. (2010) Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces cerevisiae. BMC Syst. Biol., 4, 172.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 172
-
-
Mirzarezaee, M.1
Araabi, B.N.2
Sadeghi, M.3
-
72
-
-
27144464910
-
Flexible nets
-
COI: 1:CAS:528:DC%2BD2MXhtFGqtbjO
-
Dunker, A. K. Cortese, M. S. Romero, P. Iakoucheva, L. M. and Uversky, V. N. (2005) Flexible nets. The roles of intrinsic disorder in protein interaction networks. FEBS J., 272, 5129–5148.
-
(2005)
The roles of intrinsic disorder in protein interaction networks. FEBS J.
, vol.272
, pp. 5129-5148
-
-
Dunker, A.K.1
Cortese, M.S.2
Romero, P.3
Iakoucheva, L.M.4
Uversky, V.N.5
-
73
-
-
80051694973
-
HIV protein sequence hotspots for crosstalk with host hub proteins
-
COI: 1:CAS:528:DC%2BC3MXhtFGhtLnJ, PID: 21858059
-
Sarmady, M. Dampier, W. and Tozeren, A. (2011) HIV protein sequence hotspots for crosstalk with host hub proteins. PLoS ONE, 6, e23293.
-
(2011)
PLoS ONE
, vol.6
-
-
Sarmady, M.1
Dampier, W.2
Tozeren, A.3
-
74
-
-
0035211290
-
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or “interologs
-
COI: 1:CAS:528:DC%2BD3MXovFOgtLk%3D, PID: 11731503
-
Matthews, L. R. Vaglio, P. Reboul, J. Ge, H. Davis, B. P. Garrels, J. Vincent, S. and Vidal, M. (2001) Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or “interologs”. Genome Res., 11, 2120–2126.
-
(2001)
Genome Res.
, vol.11
, pp. 2120-2126
-
-
Matthews, L.R.1
Vaglio, P.2
Reboul, J.3
Ge, H.4
Davis, B.P.5
Garrels, J.6
Vincent, S.7
Vidal, M.8
-
75
-
-
84863010950
-
Three-dimensional reconstruction of protein networks provides insight into human genetic disease
-
COI: 1:CAS:528:DC%2BC38XnvVehsA%3D%3D, PID: 22252508
-
Wang, X. Wei, X. Thijssen, B. Das, J. Lipkin, S. M. and Yu, H. (2012) Three-dimensional reconstruction of protein networks provides insight into human genetic disease. Nat. Biotechnol., 30, 159–164.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 159-164
-
-
Wang, X.1
Wei, X.2
Thijssen, B.3
Das, J.4
Lipkin, S.M.5
Yu, H.6
-
76
-
-
80052411919
-
Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
-
COI: 1:CAS:528:DC%2BC3MXhtFWrsr%2FF, PID: 21886100
-
Tuncbag, N. Gursoy, A. Nussinov, R. and Keskin, O. (2011) Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM. Nat. Protoc., 6, 1341–1354.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1341-1354
-
-
Tuncbag, N.1
Gursoy, A.2
Nussinov, R.3
Keskin, O.4
-
77
-
-
84862625522
-
Constructing structural networks of signaling pathways on the proteome scale Curr
-
COI: 1:CAS:528:DC%2BC38XmvFCis7s%3D
-
Kuzu, G. Keskin, O. Gursoy, A. and Nussinov, R. (2012) Constructing structural networks of signaling pathways on the proteome scale Curr. Opin. Struct. Biol., 22, 367–377.
-
(2012)
Opin. Struct. Biol.
, vol.22
, pp. 367-377
-
-
Kuzu, G.1
Keskin, O.2
Gursoy, A.3
Nussinov, R.4
-
78
-
-
64049083918
-
Proteinprotein interaction as a predictor of subcellular location
-
PID: 19243629
-
Shin, C. J. Wong, S. Davis, M. J. and Ragan, M. A. (2009) Proteinprotein interaction as a predictor of subcellular location. BMC Syst. Biol., 3, 28.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 28
-
-
Shin, C.J.1
Wong, S.2
Davis, M.J.3
Ragan, M.A.4
-
79
-
-
84877144416
-
Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study
-
COI: 1:CAS:528:DC%2BC38XpvVWqsLk%3D, PID: 22759426
-
Jiang, J. Q. and Wu, M. (2012) Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study. BMC Bioinformatics, 13, S20.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S20
-
-
Jiang, J.Q.1
Wu, M.2
-
80
-
-
85042778965
-
Is subcellular localization informative for modeling proteinprotein interaction signal?
-
Liu, J. Zhao, H. Tan, J. Luo, D. Yu, W. Harner, E. J. and Shih, W. J. (2008) Is subcellular localization informative for modeling proteinprotein interaction signal? Research Letters in Signal Processing, DOI: 10.1155/2008/365152
-
(2008)
Research Letters in Signal Processing
-
-
Liu, J.1
Zhao, H.2
Tan, J.3
Luo, D.4
Yu, W.5
Harner, E.J.6
Shih, W.J.7
-
81
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
COI: 1:CAS:528:DC%2BC3MXhs12htbrO, PID: 22080510
-
Kanehisa, M. Goto, S. Sato, Y. Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109–D114.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D109-D114
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
82
-
-
84876556918
-
EcoCyc: fusing model organism databases with systems biology
-
COI: 1:CAS:528:DC%2BC38XhvV2ktrzJ, PID: 23143106
-
Keseler, I. M. Mackie, A. Peralta-Gil, M. Santos-Zavaleta, A. Gama-Castro, S. Bonavides-Martínez, C. Fulcher, C. Huerta, A. M. Kothari, A. Krummenacker, M. et al. (2013) EcoCyc: fusing model organism databases with systems biology. Nucleic Acids Res., 41, D605–D612.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D605-D612
-
-
Keseler, I.M.1
Mackie, A.2
Peralta-Gil, M.3
Santos-Zavaleta, A.4
Gama-Castro, S.5
Bonavides-Martínez, C.6
Fulcher, C.7
Huerta, A.M.8
Kothari, A.9
Krummenacker, M.10
-
83
-
-
75549090505
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
COI: 1:CAS:528:DC%2BC3cXktlymsw%3D%3D, PID: 19850718
-
Caspi, R. Altman, T. Dale, J. M. Dreher, K. Fulcher, C. A. Gilham, F. Kaipa, P. Karthikeyan, A. S. Kothari, A. Krummenacker, M. et al. (2010) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res., 38, D473–D479.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D473-D479
-
-
Caspi, R.1
Altman, T.2
Dale, J.M.3
Dreher, K.4
Fulcher, C.A.5
Gilham, F.6
Kaipa, P.7
Karthikeyan, A.S.8
Kothari, A.9
Krummenacker, M.10
-
84
-
-
58149200930
-
MetaTIGER: a metabolic evolution resource
-
COI: 1:CAS:528:DC%2BD1cXhsFejt7nJ, PID: 18953037
-
Whitaker, J. W. Letunic, I. McConkey, G. A. and Westhead, D. R. (2009) MetaTIGER: a metabolic evolution resource. Nucleic Acids Res., 37, D531–D538.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D531-D538
-
-
Whitaker, J.W.1
Letunic, I.2
McConkey, G.A.3
Westhead, D.R.4
-
85
-
-
41649119247
-
Protein networks in disease
-
COI: 1:CAS:528:DC%2BD1cXks1alsb8%3D, PID: 18381899
-
Ideker, T. and Sharan, R. (2008) Protein networks in disease. Genome Res., 18, 644–652.
-
(2008)
Genome Res.
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
86
-
-
0037427075
-
Interaction between BRCA2 and replication protein A is compromised by a cancerpredisposing mutation in BRCA2
-
COI: 1:CAS:528:DC%2BD3sXjtlCqtw%3D%3D, PID: 12527904
-
Wong, J. M. Ionescu, D. and Ingles, C. J. (2003) Interaction between BRCA2 and replication protein A is compromised by a cancerpredisposing mutation in BRCA2. Oncogene, 22, 28–33.
-
(2003)
Oncogene
, vol.22
, pp. 28-33
-
-
Wong, J.M.1
Ionescu, D.2
Ingles, C.J.3
-
87
-
-
33847404358
-
Studies leading to potent dual inhibitors of Bcl-2 and Bcl-xL
-
COI: 1:CAS:528:DC%2BD2sXptVGmug%3D%3D, PID: 17256834
-
Bruncko, M. Oost, T. K. Belli, B. A. Ding, H. Joseph, M. K. Kunzer, A. Martineau, D. McClellan, W. J. Mitten, M. Ng, S. C. et al. (2007) Studies leading to potent dual inhibitors of Bcl-2 and Bcl-xL. J. Med. Chem., 50, 641–662.
-
(2007)
J. Med. Chem.
, vol.50
, pp. 641-662
-
-
Bruncko, M.1
Oost, T.K.2
Belli, B.A.3
Ding, H.4
Joseph, M.K.5
Kunzer, A.6
Martineau, D.7
McClellan, W.J.8
Mitten, M.9
Ng, S.C.10
-
88
-
-
45949108954
-
Protein interactions in human genetic diseases
-
PID: 18199329
-
Schuster-Böckler, B. and Bateman, A. (2008) Protein interactions in human genetic diseases. Genome Biol., 9, R9.
-
(2008)
Genome Biol.
, vol.9
, pp. R9
-
-
Schuster-Böckler, B.1
Bateman, A.2
-
89
-
-
77957947345
-
Can self-inhibitory peptides be derived from the interface of globular protein-protein interactions?
-
COI: 1:CAS:528:DC%2BC3cXhsVSqsbrO, PID: 20607702
-
London, N. Raveh, B. Movshovitz-Attias, D. and Schueler-Furman, O. (2010) Can self-inhibitory peptides be derived from the interface of globular protein-protein interactions? Proteins, 78, 3140–3149.
-
(2010)
Proteins
, vol.78
, pp. 3140-3149
-
-
London, N.1
Raveh, B.2
Movshovitz-Attias, D.3
Schueler-Furman, O.4
-
90
-
-
69249137908
-
Peptide inhibitors targeting protein kinases
-
COI: 1:CAS:528:DC%2BD1MXos1altL4%3D, PID: 19601843
-
Eldar-Finkelman, H. and Eisenstein, M. (2009) Peptide inhibitors targeting protein kinases. Curr. Pharm. Des., 15, 2463–2470.
-
(2009)
Curr. Pharm. Des.
, vol.15
, pp. 2463-2470
-
-
Eldar-Finkelman, H.1
Eisenstein, M.2
-
91
-
-
79953100964
-
Structure-based systems biology for analyzing off-target binding
-
COI: 1:CAS:528:DC%2BC3MXkt1Kis7w%3D, PID: 21292475
-
Xie, L., Xie, L. and Bourne, P. E. (2011) Structure-based systems biology for analyzing off-target binding. Curr. Opin. Struct. Biol., 21, 189–199.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 189-199
-
-
Xie, L.1
Xie, L.2
Bourne, P.E.3
-
92
-
-
33750531864
-
Innovative lead discovery strategies for tropical diseases
-
COI: 1:CAS:528:DC%2BD28XhtFGjsrzE, PID: 17080030
-
Nwaka, S. and Hudson, A. (2006) Innovative lead discovery strategies for tropical diseases. Nat. Rev. Drug Discov., 5, 941–955.
-
(2006)
Nat. Rev. Drug Discov.
, vol.5
, pp. 941-955
-
-
Nwaka, S.1
Hudson, A.2
-
93
-
-
79551575056
-
Trial watch: phase III and submission failures: 2007–2010
-
COI: 1:CAS:528:DC%2BC3MXhtleksL8%3D, PID: 21283095
-
Arrowsmith, J. (2011) Trial watch: phase III and submission failures: 2007–2010. Nat. Rev. Drug Discov., 10, 87.
-
(2011)
Nat. Rev. Drug Discov.
, vol.10
, pp. 87
-
-
Arrowsmith, J.1
-
94
-
-
79955601786
-
Trial watch: Phase II failures: 2008–2010
-
COI: 1:CAS:528:DC%2BC3MXlsVGlsbk%3D, PID: 21532551
-
Arrowsmith, J. (2011) Trial watch: Phase II failures: 2008–2010. Nat. Rev. Drug Discov., 10, 328–329.
-
(2011)
Nat. Rev. Drug Discov.
, vol.10
, pp. 328-329
-
-
Arrowsmith, J.1
-
95
-
-
77949375380
-
Progressive multifocal leukoencephalopathy in patients on immunomodulatory therapies
-
COI: 1:CAS:528:DC%2BC3cXisFyls7g%3D, PID: 19719397
-
Major, E. O. (2010) Progressive multifocal leukoencephalopathy in patients on immunomodulatory therapies. Annu. Rev. Med., 61, 35–47.
-
(2010)
Annu. Rev. Med.
, vol.61
, pp. 35-47
-
-
Major, E.O.1
-
96
-
-
0242363259
-
Quest for the best
-
COI: 1:CAS:528:DC%2BD3sXnslarsbg%3D, PID: 14526387
-
Booth, B. and Zemmel, R. (2003) Quest for the best. Nat. Rev. Drug Discov., 2, 838–841.
-
(2003)
Nat. Rev. Drug Discov.
, vol.2
, pp. 838-841
-
-
Booth, B.1
Zemmel, R.2
-
97
-
-
68949119585
-
The topology of drug-target interaction networks: implicit dependence on drug properties and target families
-
COI: 1:CAS:528:DC%2BD1MXps1Kksbo%3D, PID: 19668871
-
Mestres, J. Gregori-Puigjané, E. Valverde, S. and Solé, R. V. (2009) The topology of drug-target interaction networks: implicit dependence on drug properties and target families. Mol. Biosyst., 5, 1051–1057.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1051-1057
-
-
Mestres, J.1
Gregori-Puigjané, E.2
Valverde, S.3
Solé, R.V.4
-
98
-
-
0042121318
-
Medicinal chemistry of target family-directed masterkeys
-
PID: 12927511
-
Müller, G. (2003) Medicinal chemistry of target family-directed masterkeys. Drug Discov. Today, 8, 681–691.
-
(2003)
Drug Discov. Today
, vol.8
, pp. 681-691
-
-
Müller, G.1
-
99
-
-
0036717194
-
The druggable genome
-
COI: 1:CAS:528:DC%2BD38XmslamtrY%3D, PID: 12209152
-
Hopkins, A. L. and Groom, C. R. (2002) The druggable genome. Nat. Rev. Drug Discov., 1, 727–730.
-
(2002)
Nat. Rev. Drug Discov.
, vol.1
, pp. 727-730
-
-
Hopkins, A.L.1
Groom, C.R.2
-
100
-
-
34547522758
-
Discovery of antiandrogen activity of nonsteroidal scaffolds of marketed drugs
-
COI: 1:CAS:528:DC%2BD2sXosVClsLs%3D, PID: 17606915
-
Bisson, W. H. Cheltsov, A. V. Bruey-Sedano, N. Lin, B. Chen, J. Goldberger, N. May, L. T. Christopoulos, A. Dalton, J. T. Sexton, P. M. et al. (2007) Discovery of antiandrogen activity of nonsteroidal scaffolds of marketed drugs. Proc. Natl. Acad. Sci. U.S.A., 104, 11927–11932.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 11927-11932
-
-
Bisson, W.H.1
Cheltsov, A.V.2
Bruey-Sedano, N.3
Lin, B.4
Chen, J.5
Goldberger, N.6
May, L.T.7
Christopoulos, A.8
Dalton, J.T.9
Sexton, P.M.10
-
101
-
-
40449088993
-
A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence
-
COI: 1:CAS:528:DC%2BD1cXislSkt78%3D, PID: 18276850
-
Liu, C. I. Liu, G. Y. Song, Y. Yin, F. Hensler, M. E. Jeng, W. Y. Nizet, V. Wang, A. H. and Oldfield, E. (2008) A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence. Science, 319, 1391–1394.
-
(2008)
Science
, vol.319
, pp. 1391-1394
-
-
Liu, C.I.1
Liu, G.Y.2
Song, Y.3
Yin, F.4
Hensler, M.E.5
Jeng, W.Y.6
Nizet, V.7
Wang, A.H.8
Oldfield, E.9
-
102
-
-
18844441446
-
An old target revisited: two new privileged skeletons and an unexpected binding mode for HIVprotease inhibitors
-
COI: 1:CAS:528:DC%2BD2MXkvVyqu7g%3D, PID: 15822136
-
Specker, E. Böttcher, J. Lilie, H. Heine, A. Schoop, A. Müller, G. Griebenow, N. and Klebe, G. (2005) An old target revisited: two new privileged skeletons and an unexpected binding mode for HIVprotease inhibitors. Angew. Chem. Int. Ed. Engl., 44, 3140–3144.
-
(2005)
Angew. Chem. Int. Ed. Engl.
, vol.44
, pp. 3140-3144
-
-
Specker, E.1
Böttcher, J.2
Lilie, H.3
Heine, A.4
Schoop, A.5
Müller, G.6
Griebenow, N.7
Klebe, G.8
-
103
-
-
1642540579
-
Unexpected nanomolar inhibition of carbonic anhydrase by COX-2-selective celecoxib: new pharmacological opportunities due to related binding site recognition
-
COI: 1:CAS:528:DC%2BD3sXpvFGltLc%3D, PID: 14736236
-
Weber, A. Casini, A. Heine, A. Kuhn, D. Supuran, C. T. Scozzafava, A. and Klebe, G. (2004) Unexpected nanomolar inhibition of carbonic anhydrase by COX-2-selective celecoxib: new pharmacological opportunities due to related binding site recognition. J. Med. Chem., 47, 550–557.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 550-557
-
-
Weber, A.1
Casini, A.2
Heine, A.3
Kuhn, D.4
Supuran, C.T.5
Scozzafava, A.6
Klebe, G.7
-
104
-
-
67749113760
-
Model structure of APOBEC3C reveals a binding pocket modulating ribonucleic acid interaction required for encapsidation
-
COI: 1:CAS:528:DC%2BD1MXps1anu7o%3D, PID: 19581596
-
Stauch, B. Hofmann, H. Perkovic, M. Weisel, M. Kopietz, F. Cichutek, K. Münk, C. and Schneider, G. (2009) Model structure of APOBEC3C reveals a binding pocket modulating ribonucleic acid interaction required for encapsidation. Proc. Natl. Acad. Sci. U.S.A., 106, 12079–12084.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 12079-12084
-
-
Stauch, B.1
Hofmann, H.2
Perkovic, M.3
Weisel, M.4
Kopietz, F.5
Cichutek, K.6
Münk, C.7
Schneider, G.8
-
105
-
-
56249134213
-
Discovery of drug-like inhibitors of an essential RNA-editing ligase in Trypanosoma brucei
-
COI: 1:CAS:528:DC%2BD1cXhsVWlurjM, PID: 18981420
-
Amaro, R. E. Schnaufer, A. Interthal, H. Hol, W. Stuart, K. D. and McCammon, J. A. (2008) Discovery of drug-like inhibitors of an essential RNA-editing ligase in Trypanosoma brucei. Proc. Natl. Acad. Sci. U.S.A., 105, 17278–17283.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 17278-17283
-
-
Amaro, R.E.1
Schnaufer, A.2
Interthal, H.3
Hol, W.4
Stuart, K.D.5
McCammon, J.A.6
-
106
-
-
84862510972
-
Large-scale prediction and testing of drug activity on side-effect targets
-
COI: 1:CAS:528:DC%2BC38XovFyrtb0%3D, PID: 22722194
-
Lounkine, E. Keiser, M. J. Whitebread, S. Mikhailov, D. Hamon, J. Jenkins, J. L. Lavan, P. Weber, E. Doak, A. K. Côté, S. et al. (2012) Large-scale prediction and testing of drug activity on side-effect targets. Nature 486, 361–367.
-
(2012)
Nature
, vol.486
, pp. 361-367
-
-
Lounkine, E.1
Keiser, M.J.2
Whitebread, S.3
Mikhailov, D.4
Hamon, J.5
Jenkins, J.L.6
Lavan, P.7
Weber, E.8
Doak, A.K.9
Côté, S.10
-
107
-
-
5044226336
-
Systems biology in drug discovery
-
COI: 1:CAS:528:DC%2BD2cXotFGqur0%3D, PID: 15470465
-
Butcher, E. C. Berg, E. L. and Kunkel, E. J. (2004) Systems biology in drug discovery. Nat. Biotechnol., 22, 1253–1259.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1253-1259
-
-
Butcher, E.C.1
Berg, E.L.2
Kunkel, E.J.3
-
108
-
-
35148838537
-
Drug-target network
-
COI: 1:CAS:528:DC%2BD2sXhtFagt7rO, PID: 17921997
-
Yildirim, M. A. Goh, K. I. Cusick, M. E. Barabási, A. L. and Vidal, M. (2007) Drug-target network. Nat. Biotechnol., 25, 1119–1126.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1119-1126
-
-
Yildirim, M.A.1
Goh, K.I.2
Cusick, M.E.3
Barabási, A.L.4
Vidal, M.5
-
109
-
-
59849125136
-
Dynamic modularity in protein interaction networks predicts breast cancer outcome
-
COI: 1:CAS:528:DC%2BD1MXht1ehsbs%3D, PID: 19182785
-
Taylor, I. W. Linding, R. Warde-Farley, D. Liu, Y. Pesquita, C. Faria, D. Bull, S. Pawson, T. Morris, Q. and Wrana, J. L. (2009) Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat. Biotechnol., 27, 199–204.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 199-204
-
-
Taylor, I.W.1
Linding, R.2
Warde-Farley, D.3
Liu, Y.4
Pesquita, C.5
Faria, D.6
Bull, S.7
Pawson, T.8
Morris, Q.9
Wrana, J.L.10
-
110
-
-
78049445175
-
Drug off-target effects predicted using structural analysis in the context of a metabolic network model
-
PID: 20957118
-
Chang, R. L. Xie, L. Xie, L. Bourne, P. E. and Palsson, B. Ø. (2010) Drug off-target effects predicted using structural analysis in the context of a metabolic network model. PLOS Comput. Biol., 6, e1000938.
-
(2010)
PLOS Comput. Biol.
, vol.6
-
-
Chang, R.L.1
Xie, L.2
Xie, L.3
Bourne, P.E.4
Palsson, B.Ø.5
-
111
-
-
61649095940
-
Mycobacterium tuberculosis interactome analysis unravels potential pathways to drug resistance
-
PID: 19105810
-
Raman, K. and Chandra, N. (2008) Mycobacterium tuberculosis interactome analysis unravels potential pathways to drug resistance. BMC Microbiol., 8, 234.
-
(2008)
BMC Microbiol.
, vol.8
, pp. 234
-
-
Raman, K.1
Chandra, N.2
-
112
-
-
0037374498
-
The price of innovation: new estimates of drug development costs
-
PID: 12606142
-
DiMasi, J. A. Hansen, R.W. and Grabowski, H. G. (2003) The price of innovation: new estimates of drug development costs. J. Health Econ., 22, 151–185.
-
(2003)
J. Health Econ.
, vol.22
, pp. 151-185
-
-
DiMasi, J.A.1
Hansen, R.W.2
Grabowski, H.G.3
-
113
-
-
79951967029
-
Principles of early drug discovery
-
COI: 1:CAS:528:DC%2BC3MXivF2lt7o%3D, PID: 21091654
-
Hughes, J. P. Rees, S. Kalindjian, S. B. and Philpott, K. L. (2011) Principles of early drug discovery. Br. J. Pharmacol., 162, 1239–1249.
-
(2011)
Br. J. Pharmacol.
, vol.162
, pp. 1239-1249
-
-
Hughes, J.P.1
Rees, S.2
Kalindjian, S.B.3
Philpott, K.L.4
-
114
-
-
4344668661
-
Drug repositioning: identifying and developing new uses for existing drugs
-
COI: 1:CAS:528:DC%2BD2cXmtVOhtL8%3D, PID: 15286734
-
Ashburn, T. T. and Thor, K. B. (2004) Drug repositioning: identifying and developing new uses for existing drugs. Nat. Rev. Drug Discov., 3, 673–683.
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, pp. 673-683
-
-
Ashburn, T.T.1
Thor, K.B.2
-
115
-
-
79960796417
-
Exploiting drugdisease relationships for computational drug repositioning
-
COI: 1:CAS:528:DC%2BC3MXptl2js70%3D, PID: 21690101
-
Dudley, J. T. Deshpande, T. and Butte, A. J. (2011) Exploiting drugdisease relationships for computational drug repositioning. Brief. Bioinform., 12, 303–311.
-
(2011)
Brief. Bioinform.
, vol.12
, pp. 303-311
-
-
Dudley, J.T.1
Deshpande, T.2
Butte, A.J.3
-
116
-
-
78651321625
-
PROMISCUOUS: a database for networkbased drug-repositioning
-
von Eichborn, J. Murgueitio, M. S. Dunkel, M. Koerner, S. Bourne, P. E. and Preissner, R. (2011) PROMISCUOUS: a database for networkbased drug-repositioning. Nucleic Acids Res., 39, D1060–D1066.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D1060-D1066
-
-
von Eichborn, J.1
Murgueitio, M.S.2
Dunkel, M.3
Koerner, S.4
Bourne, P.E.5
Preissner, R.6
-
117
-
-
77953907294
-
Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data
-
PID: 20478034
-
Chen, B. Dong, X. Jiao, D. Wang, H. Zhu, Q. Ding, Y. and Wild, D. J. (2010) Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data. BMC Bioinformatics, 11, 255.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 255
-
-
Chen, B.1
Dong, X.2
Jiao, D.3
Wang, H.4
Zhu, Q.5
Ding, Y.6
Wild, D.J.7
-
118
-
-
79953695916
-
In silico repositioning of approved drugs for rare and neglected diseases
-
PID: 21376136
-
Ekins, S. Williams, A. J. Krasowski, M. D. and Freundlich, J. S. (2011) In silico repositioning of approved drugs for rare and neglected diseases. Drug Discov. Today, 16, 298–310.
-
(2011)
Drug Discov. Today
, vol.16
, pp. 298-310
-
-
Ekins, S.1
Williams, A.J.2
Krasowski, M.D.3
Freundlich, J.S.4
-
119
-
-
79960775459
-
Drug repositioning for orphan diseases
-
COI: 1:CAS:528:DC%2BC3MXptl2js78%3D, PID: 21504985
-
Sardana, D. Zhu, C. Zhang, M. Gudivada, R. C. Yang, L. and Jegga, A. G. (2011) Drug repositioning for orphan diseases. Brief. Bioinform., 12, 346–356.
-
(2011)
Brief. Bioinform.
, vol.12
, pp. 346-356
-
-
Sardana, D.1
Zhu, C.2
Zhang, M.3
Gudivada, R.C.4
Yang, L.5
Jegga, A.G.6
-
120
-
-
47249146126
-
Drug target identification using side-effect similarity
-
COI: 1:CAS:528:DC%2BD1cXot1entbY%3D, PID: 18621671
-
Campillos, M. Kuhn, M. Gavin, A. C. Jensen, L. J. and Bork, P. (2008) Drug target identification using side-effect similarity. Science 321, 263–266.
-
(2008)
Science
, vol.321
, pp. 263-266
-
-
Campillos, M.1
Kuhn, M.2
Gavin, A.C.3
Jensen, L.J.4
Bork, P.5
-
121
-
-
84856055845
-
Recycling side-effects into clinical markers for drug repositioning
-
COI: 1:CAS:528:DC%2BC38XivVWlsb0%3D, PID: 22283977
-
Duran-Frigola, M. and Aloy, P. (2012) Recycling side-effects into clinical markers for drug repositioning. Genome Med., 4 3.
-
(2012)
Genome Med.
, vol.4
, pp. 3
-
-
Duran-Frigola, M.1
Aloy, P.2
-
122
-
-
3042735762
-
Thalidomide: tragic past and promising future
-
COI: 1:CAS:528:DC%2BD2cXmtlSgu7g%3D, PID: 15244387
-
Rajkumar, S. V. (2004) Thalidomide: tragic past and promising future. Mayo Clin. Proc., 79, 899–903.
-
(2004)
Mayo Clin. Proc.
, vol.79
, pp. 899-903
-
-
Rajkumar, S.V.1
-
124
-
-
84875992866
-
Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network
-
COI: 1:CAS:528:DC%2BC3sXlvValsLg%3D, PID: 23555229
-
Huang, J. Niu, C. Green, C. D. Yang, L. Mei, H. and Han, J.-D. (2013) Systematic prediction of pharmacodynamic drug-drug interactions through protein-protein-interaction network. PLoS Comput. Biol., 9, e1002998.
-
(2013)
PLoS Comput. Biol.
, vol.9
-
-
Huang, J.1
Niu, C.2
Green, C.D.3
Yang, L.4
Mei, H.5
Han, J.-D.6
-
125
-
-
70349978292
-
Combination therapy: opportunities and challenges for polymer-drug conjugates as anticancer nanomedicines
-
COI: 1:CAS:528:DC%2BD1MXhtlWhtL7F, PID: 19699247
-
Greco, F. and Vicent, M. J. (2009) Combination therapy: opportunities and challenges for polymer-drug conjugates as anticancer nanomedicines. Adv. Drug Deliv. Rev., 61, 1203–1213.
-
(2009)
Adv. Drug Deliv. Rev.
, vol.61
, pp. 1203-1213
-
-
Greco, F.1
Vicent, M.J.2
-
126
-
-
77950654528
-
Tubulin-targeting agents in hybrid drugs
-
COI: 1:CAS:528:DC%2BC3cXjs1Kktb0%3D, PID: 20088764
-
Breen, E. C. and Walsh, J. J. (2010) Tubulin-targeting agents in hybrid drugs. Curr. Med. Chem., 17, 609–639.
-
(2010)
Curr. Med. Chem.
, vol.17
, pp. 609-639
-
-
Breen, E.C.1
Walsh, J.J.2
-
127
-
-
78649471700
-
Emerging drugs in endometrial cancers
-
COI: 1:CAS:528:DC%2BC3cXhsVOgtL3K, PID: 20828226
-
Altundag, O. Dursun, P. and Ayhan, A. (2010) Emerging drugs in endometrial cancers. Expert Opin. Emerg. Drugs, 15, 557–568.
-
(2010)
Expert Opin. Emerg. Drugs
, vol.15
, pp. 557-568
-
-
Altundag, O.1
Dursun, P.2
Ayhan, A.3
-
128
-
-
84861977399
-
Where rilpivirine meets with tenofovir, the start of a new anti-HIV drug combination era
-
PID: 22504027
-
De Clercq, E. (2012) Where rilpivirine meets with tenofovir, the start of a new anti-HIV drug combination era. Biochem. Pharmacol., 84, 241–248.
-
(2012)
Biochem. Pharmacol.
, vol.84
, pp. 241-248
-
-
De Clercq, E.1
-
129
-
-
84891495104
-
Etravirine in protease inhibitor-free antiretroviral combination therapies
-
Schuelter, E. Luebke, N. Jensen, B. Zazzi, M. Sönnerborg, A. Lengauer, T. Incardona, F. Camacho, R. Schmit, J. Clotet, B. et al. (2012) Etravirine in protease inhibitor-free antiretroviral combination therapies. J. Int. AIDS Soc., 15, 18260.
-
(2012)
J. Int. AIDS Soc.
, vol.15
, pp. 18260
-
-
Schuelter, E.1
Luebke, N.2
Jensen, B.3
Zazzi, M.4
Sönnerborg, A.5
Lengauer, T.6
Incardona, F.7
Camacho, R.8
Schmit, J.9
Clotet, B.10
-
130
-
-
84864928382
-
Hierarchical Bayes Model for predicting effectiveness of HIV combination therapies
-
Bogojeska, J. and Lengauer, T. (2012) Hierarchical Bayes Model for predicting effectiveness of HIV combination therapies. Stat. Appl. Genet. Mol. Biol., 11, 11.
-
(2012)
Stat. Appl. Genet. Mol. Biol.
, vol.11
, pp. 11
-
-
Bogojeska, J.1
Lengauer, T.2
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