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Volumn 486, Issue 7403, 2012, Pages 361-367

Large-scale prediction and testing of drug activity on side-effect targets

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLSALICYLIC ACID; ALOSETRON; APRINDINE; ARIPIPRAZOLE; CHLORHEXIDINE; CHLOROTRIANISENE; CITALOPRAM; CLEMASTINE; CYCLOBENZAPRINE; CYCLOOXYGENASE 1; DESIPRAMINE; DIPHENHYDRAMINE; DYCLONINE; FASUDIL; FLUSPIRILENE; FLUTAMIDE; HALOPERIDOL; INDOMETACIN; LOXAPINE; METHYLPREDNISOLONE; OXYCODONE; PRENYLAMINE; RANITIDINE; RIFAXIMIN; RITODRINE; SERTRALINE; SIBUTRAMINE; TEGASEROD; TERFENADINE; UNINDEXED DRUG;

EID: 84862510972     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature11159     Document Type: Article
Times cited : (731)

References (53)
  • 2
    • 79551575056 scopus 로고    scopus 로고
    • Trial watch: Phase III and submission failures: 2007-2010
    • Arrowsmith, J. Trial watch: phase III and submission failures: 2007-2010. Nature Rev. Drug Discov. 10, 87 (2011).
    • (2011) Nature Rev. Drug Discov. , vol.10 , pp. 87
    • Arrowsmith, J.1
  • 3
    • 79955601786 scopus 로고    scopus 로고
    • Trial watch: Phase II failures:2008-2010
    • Arrowsmith, J. Trial watch: phase II failures: 2008-2010. Nature Rev. Drug Discov. 10, 328-329 (2011).
    • (2011) Nature Rev. Drug Discov. , vol.10 , pp. 328-329
    • Arrowsmith, J.1
  • 4
    • 77949898228 scopus 로고    scopus 로고
    • The use of computer models in pharmaceutical safety evaluation
    • Boyer, S. The use of computer models in pharmaceutical safety evaluation. Altern. Lab. Anim. 37, 467-475 (2009).
    • (2009) Altern. Lab. Anim. , vol.37 , pp. 467-475
    • Boyer, S.1
  • 5
    • 15044348210 scopus 로고    scopus 로고
    • Cardiovascular hazard and non-steroidal anti-inflammatory drugs
    • DOI 10.1016/j.coph.2005.02.001, PII S1471489205000160
    • Wong, D., Wang, M., Cheng, Y. & Fitzgerald, G. A. Cardiovascular hazard and nonsteroidal anti-inflammatory drugs. Curr. Opin. Pharmacol. 5, 204-210 (2005). (Pubitemid 40378754)
    • (2005) Current Opinion in Pharmacology , vol.5 , Issue.SPEC. ISS.2 , pp. 204-210
    • Wong, D.1    Wang, M.2    Cheng, Y.3    FitzGerald, G.A.4
  • 6
    • 78649281814 scopus 로고    scopus 로고
    • Protein adducts as prospective biomarkers of nevirapine toxicity
    • Antunes, A. M. M. et al. Protein adducts as prospective biomarkers of nevirapine toxicity. Chem. Res. Toxicol. 23, 1714-1725 (2010).
    • (2010) Chem. Res. Toxicol. , vol.23 , pp. 1714-1725
    • Antunes, A.M.M.1
  • 7
    • 0034610435 scopus 로고    scopus 로고
    • Evidence for possible involvement of 5-HT2B receptors in the cardiac valvulopathy associated with fenfluramine and other serotonergic medications
    • Rothman, R. B. et al. Evidence for possible involvement of 5-HT2B receptors in the cardiac valvulopathy associated with fenfluramine and other serotonergic medications. Circulation 102, 2836-2841 (2000).
    • (2000) Circulation , vol.102 , pp. 2836-2841
    • Rothman, R.B.1
  • 8
    • 0029761822 scopus 로고    scopus 로고
    • HERG, a primary human ventricular target of the nonsedating antihistamine terfenadine
    • Roy, M., Dumaine, R. & Brown, A. M. HERG, a primary human ventricular target of the nonsedating antihistamine terfenadine. Circulation 94, 817-823 (1996). (Pubitemid 26289240)
    • (1996) Circulation , vol.94 , Issue.4 , pp. 817-823
    • Roy, M.-L.1    Dumaine, R.2    Brown, A.M.3
  • 9
    • 0028914969 scopus 로고
    • A molecular basis for cardiac arrhythmia: HERG mutations cause long QT syndrome
    • Curran, M. E. et al. A molecular basis for cardiac arrhythmia: HERG mutations cause long QT syndrome. Cell 80, 795-803 (1995).
    • (1995) Cell , vol.80 , pp. 795-803
    • Curran, M.E.1
  • 10
    • 0042122711 scopus 로고    scopus 로고
    • Drug adverse reaction target database (DART): Proteins related to adverse drug reactions
    • DOI 10.2165/00002018-200326100-00002
    • Ji, Z. L. et al. Drug Adverse Reaction Target Database (DART): proteins related to adverse drug reactions. Drug Saf. 26, 685-690 (2003). (Pubitemid 36976130)
    • (2003) Drug Safety , vol.26 , Issue.10 , pp. 685-690
    • Ji, Z.L.1    Han, L.Y.2    Yap, C.W.3    Sun, L.Z.4    Chen, X.5    Chen, Y.Z.6
  • 12
    • 77249096313 scopus 로고    scopus 로고
    • Prediction of drug-related cardiac adverse effects in humans-A: Creation of a database of effects and identification of factors affecting their occurrence
    • Matthews, E. J. & Frid, A. A. Prediction of drug-related cardiac adverse effects in humans-A: Creation of a database of effects and identification of factors affecting their occurrence. Regul. Toxicol. Pharmacol. 56, 247-275 (2010).
    • (2010) Regul. Toxicol. Pharmacol. , vol.56 , pp. 247-275
    • Matthews, E.J.1    Frid, A.A.2
  • 13
    • 77952742187 scopus 로고    scopus 로고
    • Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data
    • Yang, X. et al. Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data. J. Biomed. Inform. 43, 376-384 (2010).
    • (2010) J. Biomed. Inform. , vol.43 , pp. 376-384
    • Yang, X.1
  • 14
    • 54249155522 scopus 로고    scopus 로고
    • Network pharmacology: The next paradigmin drug discovery
    • Hopkins,A. L. Network pharmacology: the next paradigmin drug discovery. Nature Chem. Biol. 4, 682-690 (2008).
    • (2008) Nature Chem. Biol. , vol.4 , pp. 682-690
    • Hopkinsa, L.1
  • 16
    • 67849110009 scopus 로고    scopus 로고
    • A server for the prediction of populations susceptible to serious adverse drug reactions implementing the methodology of a chemical-protein interactome
    • Yang, L., Luo, H., Chen, J., Xing, Q. & He, L. SePreSA: a server for the prediction of populations susceptible to serious adverse drug reactions implementing the methodology of a chemical-protein interactome. Nucleic Acids Res. 37, W406-W412 (2009).
    • (2009) Nucleic Acids Res. , vol.37
    • Yang, L.1    Luo, H.2    Chen, J.3    Xing, Q.4    Sepresa, H.L.5
  • 17
    • 79953072390 scopus 로고    scopus 로고
    • Building the process-drug-side effect network to discover the relationship between biological processes and side effects
    • Lee, S., Lee, K. H., Song, M. & Lee, D. Building the process-drug-side effect network to discover the relationship between biological processes and side effects. BMC Bioinformatics 12 (suppl. 2), S2 (2011).
    • (2011) BMC Bioinformatics , vol.12 , Issue.SUPPL. 2
    • Lee, S.1    Lee, K.H.2    Song, M.3    Lee, D.4
  • 18
    • 79551681222 scopus 로고    scopus 로고
    • Protein binding specificity versus promiscuity
    • Schreiber, G. & Keating, A. E. Protein binding specificity versus promiscuity. Curr. Opin. Struct. Biol. 21, 50-61 (2011).
    • (2011) Curr. Opin. Struct. Biol. , vol.21 , pp. 50-61
    • Schreiber, G.1    Keating, A.E.2
  • 19
    • 79958831734 scopus 로고    scopus 로고
    • Associating drugs, targets and clinical outcomes into an integrated network affords a new platform for computer-aided drug repurposing
    • Oprea, T. I. et al. Associating drugs, targets and clinical outcomes into an integrated network affords a new platform for computer-aided drug repurposing. Mol. Inform. 30, 100-111 (2011).
    • (2011) Mol. Inform. , vol.30 , pp. 100-111
    • Oprea, T.I.1
  • 21
    • 65649093070 scopus 로고    scopus 로고
    • Mapping adverse drug reactions in chemical space
    • Scheiber, J. et al.Mapping adverse drug reactions in chemical space. J.Med. Chem. 52, 3103-3107 (2009).
    • (2009) J.Med. Chem. , vol.52 , pp. 3103-3107
    • Scheiber, J.1
  • 22
    • 40049100210 scopus 로고    scopus 로고
    • Analysis of pharmacology data and the prediction of adverse drug reactions and off-target effects from chemical structure
    • Bender, A. et al. Analysis of pharmacology data and the prediction of adverse drug reactions and off-target effects from chemical structure. ChemMedChem 2, 861-873 (2007).
    • (2007) ChemMedChem , vol.2 , pp. 861-873
    • Bender, A.1
  • 23
    • 47249146126 scopus 로고    scopus 로고
    • Drug target identification using side-effect similarity
    • DOI 10.1126/science.1158140
    • Campillos, M., Kuhn, M., Gavin, A.-C., Jensen, L. J. & Bork, P. Drug target identification using side-effect similarity. Science 321, 263-266 (2008). (Pubitemid 351989100)
    • (2008) Science , vol.321 , Issue.5886 , pp. 263-266
    • Campillos, M.1    Kuhn, M.2    Gavin, A.-C.3    Jensen, L.J.4    Bork, P.5
  • 24
    • 79959379936 scopus 로고    scopus 로고
    • Detecting drug interactions from adverse-event reports: Interaction between paroxetine and pravastatin increases blood glucose levels
    • Tatonetti, N. P. et al. Detecting drug interactions from adverse-event reports: interaction between paroxetine and pravastatin increases blood glucose levels. Clin. Pharmacol. Ther. 90, 133-142 (2011).
    • (2011) Clin. Pharmacol. Ther. , vol.90 , pp. 133-142
    • Tatonetti, N.P.1
  • 25
    • 70449634957 scopus 로고    scopus 로고
    • Predicting new molecular targets for known drugs
    • Keiser, M. J. et al. Predicting new molecular targets for known drugs. Nature 462, 175-181 (2009).
    • (2009) Nature , vol.462 , pp. 175-181
    • Keiser, M.J.1
  • 28
    • 35248817286 scopus 로고    scopus 로고
    • Modeling promiscuity based on in vitro safety pharmacology profiling data
    • Azzaoui, K. et al. Modeling promiscuity based on in vitro safety pharmacology profiling data. ChemMedChem 2, 874-880 (2007).
    • (2007) Chem Med Chem , vol.2 , pp. 874-880
    • Azzaoui, K.1
  • 29
    • 84862192766 scopus 로고    scopus 로고
    • ChEMBL: A large-scale bioactivity database for drug discovery
    • 10.1093/nar/gkr777
    • Gaulton, A. et al. ChEMBL: a large-scale bioactivity database for drug discovery. Nucleic Acids Res. 40, D1100-D1107 10.1093/nar/gkr777 (2012).
    • (2012) Nucleic Acids Res. , vol.40
    • Gaulton, A.1
  • 30
    • 84856095231 scopus 로고    scopus 로고
    • Chemical informatics and target identification in a zebrafish phenotypic screen
    • Laggner, C. et al. Chemical informatics and target identification in a zebrafish phenotypic screen. Nature Chem. Biol. 8, 144-146 (2012).
    • (2012) Nature Chem. Biol. , vol.8 , pp. 144-146
    • Laggner, C.1
  • 31
    • 37749011993 scopus 로고    scopus 로고
    • Epik: A software program for pKa prediction and protonation state generation for drug-like molecules
    • Shelley, J. C. et al. Epik: a software program for pKa prediction and protonation state generation for drug-like molecules. J. Comput. Aided Mol. Des. 21, 681-691 (2007).
    • (2007) J. Comput. Aided Mol. Des. , vol.21 , pp. 681-691
    • Shelley, J.C.1
  • 32
    • 45749116266 scopus 로고    scopus 로고
    • Application of belief theory to similarity data fusion for use in analog searching and lead hopping
    • Muchmore, S.W. et al.Application of belief theory to similarity data fusion for use in analog searching and lead hopping. J. Chem. Inf. Model. 48, 941-948 (2008).
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 941-948
    • Muchmore, S.W.1
  • 34
    • 0242382827 scopus 로고    scopus 로고
    • Role of dopamine transporter imaging in the diagnosis of atypical tremor disorders
    • DOI 10.1002/mds.10574
    • Marshall, V.&Grosset, D. G. Role of dopamine transporter imaging in the diagnosis of atypical tremor disorders. Mov. Disord. 18 (suppl. 7), S22-S27 (2003). (Pubitemid 37336924)
    • (2003) Movement Disorders , vol.18 , Issue.SUPPL. 7
    • Marshall, V.1    Grosset, D.G.2
  • 35
    • 0033976628 scopus 로고    scopus 로고
    • Inhibition of Na1 current by diphenhydramine and other diphenyl compounds: Molecular determinants of selective binding to the inactivated channels
    • Kuo, C. C., Huang, R. C. & Lou, B. S. Inhibition of Na1 current by diphenhydramine and other diphenyl compounds: molecular determinants of selective binding to the inactivated channels. Mol. Pharmacol. 57, 135-143 (2000).
    • (2000) Mol. Pharmacol. , vol.57 , pp. 135-143
    • Kuo, C.C.1    Huang, R.C.2    Lou, B.S.3
  • 36
    • 0024591782 scopus 로고
    • Mechanisms of nonsteroidal anti-inflammatory drug-induced gastric damage
    • DOI 10.1016/0002-9343(89)90344-6
    • Schoen, R. T. & Vender, R. J. Mechanisms of nonsteroidal anti-inflammatory druginduced gastric damage. Am. J. Med. 86, 449-458 (1989). (Pubitemid 19103913)
    • (1989) American Journal of Medicine , vol.86 , Issue.4 , pp. 449-458
    • Schoen, R.T.1    Vender, R.J.2
  • 37
    • 0031877847 scopus 로고    scopus 로고
    • Prevalence and cost of hospitalization for gastrointestinal complications related to peptic ulcers with bleeding or perforation: Comparison of two national databases
    • Kong, S. X., Hatoum, H. T., Zhao, S. Z., Agrawal, N. M. & Geis, S. G. Prevalence and cost of hospitalization for gastrointestinal complications related to peptic ulcers with bleeding or perforation: comparison of two national databases. Am. J. Manag. Care 4, 399-409 (1998). (Pubitemid 28350796)
    • (1998) American Journal of Managed Care , vol.4 , Issue.3 , pp. 399-409
    • Kong, S.X.1    Hatoum, H.T.2    Zhao, S.Z.3    Agrawal, N.M.4    Geis, S.G.5
  • 38
    • 78650657838 scopus 로고    scopus 로고
    • Selective COX-1 inhibition: A therapeutic target to be reconsidered
    • G., Perrone, M., Scilimati, A., Simone, L. & Vitale, P. Selective COX-1 inhibition: A therapeutic target to be reconsidered. Curr. Med. Chem. 17, 3769-3805 (2010).
    • (2010) Curr. Med. Chem. , vol.17 , pp. 3769-3805
    • Perrone, M.1    Scilimati, A.2    Simone, L.3    Vitale, P.4
  • 39
    • 33750503604 scopus 로고    scopus 로고
    • The effects of estrone, estradiol and estriol on platelet aggregation induced by adrenaline and adenosine diphosphate
    • DOI 10.1080/09537100600745302, PII T303424017N69Q84
    • Akarasereenont, P., Tripatara, P., Chotewuttakorn, S., Palo, T. & Thaworn, A. The effects of estrone, estradiol and estriol on platelet aggregation induced by adrenaline and adenosine diphosphate. Platelets 17, 441-447 (2006). (Pubitemid 44665566)
    • (2006) Platelets , vol.17 , Issue.7 , pp. 441-447
    • Akarasereenont, P.1    Tripatara, P.2    Chotewuttakorn, S.3    Palo, T.4    Thaworn, A.5
  • 40
    • 0028641608 scopus 로고
    • Effect of oestrogen dose on whole blood platelet activation in women taking new low dose oral contraceptives
    • Norris, L. A.&Bonnar, J. Effect of oestrogen dose on whole blood platelet activation in women taking new low dose oral contraceptives. Thromb. Haemost. 72, 926-930 (1994).
    • (1994) Thromb. Haemost. , vol.72 , pp. 926-930
    • Norris, L.A.1    Bonnar, J.2
  • 41
    • 35748934487 scopus 로고    scopus 로고
    • The influence of drug-like concepts on decision-making in medicinal chemistry
    • DOI 10.1038/nrd2445, PII NRD2445
    • Leeson, P. D. & Springthorpe, B. The influence of drug-like concepts on decisionmaking in medicinal chemistry. Nature Rev. Drug Discov. 6, 881-890 (2007). (Pubitemid 350042396)
    • (2007) Nature Reviews Drug Discovery , vol.6 , Issue.11 , pp. 881-890
    • Leeson, P.D.1    Springthorpe, B.2
  • 42
    • 65549132575 scopus 로고    scopus 로고
    • Pharmacological promiscuity: Dependence on compound properties and target specificity in a set of recent Roche compounds
    • Peters, J.-U., Schnider, P., Mattei, P. & Kansy, M. Pharmacological promiscuity: dependence on compound properties and target specificity in a set of recent Roche compounds. ChemMedChem 4, 680-686 (2009).
    • (2009) ChemMedChem , vol.4 , pp. 680-686
    • Peters, J.-U.1    Schnider, P.2    Mattei, P.3    Kansy, M.4
  • 43
    • 77953593640 scopus 로고    scopus 로고
    • Cytokine-associated drug toxicity in human hepatocytes is associated with signaling network dysregulation
    • Cosgrove, B. D. et al. Cytokine-associated drug toxicity in human hepatocytes is associated with signaling network dysregulation. Mol. Biosyst. 6, 1195-1206 (2010).
    • (2010) Mol. Biosyst. , vol.6 , pp. 1195-1206
    • Cosgrove, B.D.1
  • 45
    • 68949119585 scopus 로고    scopus 로고
    • The topology of drugtarget interaction networks: Implicit dependence on drug properties and target families
    • Mestres, J., Gregori-Puigjané, E., Valverde, S. & Solé, R. V. The topology of drugtarget interaction networks: implicit dependence on drug properties and target families. Mol. Biosyst. 5, 1051-1057 (2009).
    • (2009) Mol. Biosyst. , vol.5 , pp. 1051-1057
    • Mestres, J.1    Gregori-Puigjané, E.2    Valverde, S.3    Solé, R.V.4
  • 46
    • 77952772341 scopus 로고    scopus 로고
    • Extended-connectivity fingerprints
    • Rogers, D.& Hahn, M. Extended-connectivity fingerprints. J. Chem. Inf. Model. 50, 742-754 (2010).
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 742-754
    • Rogers, D.1    Hahn, M.2
  • 50
    • 78651319979 scopus 로고    scopus 로고
    • The UniProt Consortium. Ongoing and future developments at the Universal Protein Resource
    • The UniProt Consortium. Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res. 39, D214-D219 (2010).
    • (2010) Nucleic Acids Res. , vol.39
  • 52
    • 0032991290 scopus 로고    scopus 로고
    • The Medical Dictionary for Regulatory Activities (MedDRA)
    • DOI 10.2165/00002018-199920020-00002
    • Brown, E. G., Wood, L. & Wood, S. The medical dictionary for regulatory activities (MedDRA). Drug Saf. 20, 109-117 (1999). (Pubitemid 29101275)
    • (1999) Drug Safety , vol.20 , Issue.2 , pp. 109-117
    • Brown, E.G.1    Wood, L.2    Wood, S.3
  • 53
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300 (1995).
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


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