메뉴 건너뛰기




Volumn 22, Issue 18, 2006, Pages 2291-2297

Global topological features of cancer proteins in the human interactome

Author keywords

[No Author keywords available]

Indexed keywords

CANCER PROTEIN; PROTEOME; TUMOR PROTEIN; UNCLASSIFIED DRUG;

EID: 33748706765     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl390     Document Type: Article
Times cited : (398)

References (40)
  • 1
    • 33645830948 scopus 로고    scopus 로고
    • CFinder: Locating cliques and overlapping modules in biological networks
    • Adamcsek,B. et al. (2006) CFinder: Locating cliques and overlapping modules in biological networks. Bioinformatics, 22, 1021-1023.
    • (2006) Bioinformatics , vol.22 , pp. 1021-1023
    • Adamcsek, B.1
  • 2
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner,M. et al. (2000) Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 3
    • 9144257886 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman,A. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
    • (2004) Nucleic Acids Res. , vol.32
    • Bateman, A.1
  • 4
    • 0033954256 scopus 로고    scopus 로고
    • The Protein Data Bank
    • Berman,H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 235-242
    • Berman, H.M.1
  • 5
    • 18744376914 scopus 로고    scopus 로고
    • Online predicted human interaction database
    • Brown,K.R. and Jurisica,I. (2005) Online predicted human interaction database. Bioinformatics, 21, 2076-2082.
    • (2005) Bioinformatics , vol.21 , pp. 2076-2082
    • Brown, K.R.1    Jurisica, I.2
  • 6
    • 0038074373 scopus 로고    scopus 로고
    • Topological structure analysis of the protein-protein interaction network in budding yeast
    • Bu,D. et al. (2003) Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res., 31, 2443-2450.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2443-2450
    • Bu, D.1
  • 7
    • 27144509163 scopus 로고    scopus 로고
    • A network-based analysis of systemic inflammation in humans
    • Calvano,S.E. et al. (2005) A network-based analysis of systemic inflammation in humans. Nature, 437, 1032-1037.
    • (2005) Nature , vol.437 , pp. 1032-1037
    • Calvano, S.E.1
  • 8
    • 27144464910 scopus 로고    scopus 로고
    • Flexible nets. The roles of intrinsic disorder in protein interaction networks
    • Dunker,A.K. et al. (2005) Flexible nets. The roles of intrinsic disorder in protein interaction networks. FEBS J., 272, 5129-5148.
    • (2005) FEBS J. , vol.272 , pp. 5129-5148
    • Dunker, A.K.1
  • 9
    • 0642285840 scopus 로고    scopus 로고
    • Preferential attachment in the protein network evolution
    • Eisenberg,E. and Levanon,E.Y. (2003) Preferential attachment in the protein network evolution. Phys. Rev. Lett., 91, 138701.
    • (2003) Phys. Rev. Lett. , vol.91 , pp. 138701
    • Eisenberg, E.1    Levanon, E.Y.2
  • 10
    • 20144379646 scopus 로고    scopus 로고
    • Protein interaction mapping: A Drosophila case study
    • Formstecher,E. et al. (2005) Protein interaction mapping: A Drosophila case study. Genome Res., 15, 376-384.
    • (2005) Genome Res. , vol.15 , pp. 376-384
    • Formstecher, E.1
  • 11
    • 0037177560 scopus 로고    scopus 로고
    • Evolutionary rate in the protein interaction network
    • Fraser,H.B. et al. (2002) Evolutionary rate in the protein interaction network. Science, 296, 750-752.
    • (2002) Science , vol.296 , pp. 750-752
    • Fraser, H.B.1
  • 12
    • 1542515338 scopus 로고    scopus 로고
    • A census of human cancer genes
    • Futreal,P.A. et al. (2004) A census of human cancer genes. Nat. Rev. Cancer, 4, 177-83.
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 177-183
    • Futreal, P.A.1
  • 13
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin,A.C. et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature, 415, 141-147.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1
  • 14
    • 0345600247 scopus 로고    scopus 로고
    • A Protein Interaction Map of Drosophila melanogaster
    • Giot,L. et al. (2002) A Protein Interaction Map of Drosophila melanogaster. Science, 302, 1727-1736.
    • (2002) Science , vol.302 , pp. 1727-1736
    • Giot, L.1
  • 15
    • 23844494458 scopus 로고    scopus 로고
    • Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
    • Gunsalus,K.C. et al. (2005) Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis. Nature, 436, 861-865.
    • (2005) Nature , vol.436 , pp. 861-865
    • Gunsalus, K.C.1
  • 16
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho,Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature, 415, 180-183.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1
  • 17
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker,T. et al. (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 18, S233-S240.
    • (2002) Bioinformatics , vol.18
    • Ideker, T.1
  • 18
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito,T. et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl Acad. Sci. USA, 98, 4569-4574.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1
  • 19
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong,H. et al. (2001) Lethality and centrality in protein networks. Nature, 411, 41-42.
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1
  • 20
    • 30644463216 scopus 로고    scopus 로고
    • Cluster analysis of networks generated through homology: Automatic identification of important protein communities involved in cancer metastasis
    • Jonsson,P.F. et al. (2006) Cluster analysis of networks generated through homology: Automatic identification of important protein communities involved in cancer metastasis. BMC Bioinformatics, 7, 2.
    • (2006) BMC Bioinformatics , vol.7 , pp. 2
    • Jonsson, P.F.1
  • 21
    • 0842291785 scopus 로고    scopus 로고
    • No simple dependence between protein evolution rate and the number of protein-protein interactions: Only the most prolific interactors tend to evolve slowly
    • Jordan,I.K. et al. (2003) No simple dependence between protein evolution rate and the number of protein-protein interactions: Only the most prolific interactors tend to evolve slowly. BMC Evol. Biol., 3, 1.
    • (2003) BMC Evol. Biol. , vol.3 , pp. 1
    • Jordan, I.K.1
  • 22
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: New developments in KEGG
    • Kanehisa,M. et al. (2006) From genomics to chemical genomics: New developments in KEGG. Nucleic Acids Res., 34, D354-D357.
    • (2006) Nucleic Acids Res. , vol.34
    • Kanehisa, M.1
  • 23
    • 14744270216 scopus 로고    scopus 로고
    • A first-draft human protein-interaction map
    • Lehner,B. and Fraser,A.G. (2004) A first-draft human protein-interaction map. Genome Biol., 5, R63.
    • (2004) Genome Biol. , vol.5
    • Lehner, B.1    Fraser, A.G.2
  • 24
    • 9144264169 scopus 로고    scopus 로고
    • A Map of the Interactome Network of the Metazoan C. elegans
    • Li,S. et al. (2004) A Map of the Interactome Network of the Metazoan C. elegans. Science, 303, 540-543.
    • (2004) Science , vol.303 , pp. 540-543
    • Li, S.1
  • 25
    • 13244284551 scopus 로고    scopus 로고
    • Dynamic complex formation during the yeast cell cycle
    • de Lichtenberg,U. et al. (2005) Dynamic complex formation during the yeast cell cycle. Science, 307, 724-727.
    • (2005) Science , vol.307 , pp. 724-727
    • de Lichtenberg, U.1
  • 26
    • 0035211290 scopus 로고    scopus 로고
    • Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs"
    • Matthews,L.R. et al. (2001) Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". Genome Res., 11, 2120-2126.
    • (2001) Genome Res. , vol.11 , pp. 2120-2126
    • Matthews, L.R.1
  • 27
    • 20144387067 scopus 로고    scopus 로고
    • The MIPS mammalian protein-protein interaction database
    • Pagel,P. et al. (2005) The MIPS mammalian protein-protein interaction database. Bioinformatics, 21, 832-834.
    • (2005) Bioinformatics , vol.21 , pp. 832-834
    • Pagel, P.1
  • 28
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • Palla,G. et al. (2005) Uncovering the overlapping community structure of complex networks in nature and society. Nature, 435, 814-818.
    • (2005) Nature , vol.435 , pp. 814-818
    • Palla, G.1
  • 29
    • 10744224197 scopus 로고    scopus 로고
    • Development of human protein reference database as an initial platform for approaching systems biology in humans
    • Peri,S. et al. (2003) Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res., 13, 2363-2371.
    • (2003) Genome Res. , vol.13 , pp. 2363-2371
    • Peri, S.1
  • 30
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt,K.D. et al. (2005) NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 33, D501-D504.
    • (2005) Nucleic Acids Res. , vol.33
    • Pruitt, K.D.1
  • 31
    • 34548084807 scopus 로고    scopus 로고
    • Inferring protein domain interactions from databases of interacting proteins
    • Riley,R. et al. (2005) Inferring protein domain interactions from databases of interacting proteins. Genome Biology, 6, R89.
    • (2005) Genome Biology , vol.6
    • Riley, R.1
  • 32
    • 33645536978 scopus 로고    scopus 로고
    • Protein protein interactions, evolutionary rate, abundance and age
    • Saeed,R. and Deane,C.M. (2006) Protein protein interactions, evolutionary rate, abundance and age. BMC Bioinformatics, 7, 128.
    • (2006) BMC Bioinformatics , vol.7 , pp. 128
    • Saeed, R.1    Deane, C.M.2
  • 33
    • 11144234660 scopus 로고    scopus 로고
    • Global network analysis of phenotypic effects: Protein networks and toxicity modulation in Saccharomyces cerevisiae
    • Said,M.R. et al. (2004) Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA, 101, 18006-18011.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 18006-18011
    • Said, M.R.1
  • 34
    • 0347755535 scopus 로고    scopus 로고
    • The Database of Interacting Proteins: 2004 update
    • Salwinski,L. et al. (2004) The Database of Interacting Proteins: 2004 update. Nucleic Acids Res., 32, D449-D451.
    • (2004) Nucleic Acids Res. , vol.32
    • Salwinski, L.1
  • 35
    • 13844314048 scopus 로고    scopus 로고
    • Conserved patterns of protein interaction in multiple species
    • Sharan,R. et al. (2005) Conserved patterns of protein interaction in multiple species. Proc. Natl Acad. Sci. USA, 102, 1974-1979.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 1974-1979
    • Sharan, R.1
  • 36
    • 3142706495 scopus 로고    scopus 로고
    • New methods for joint analysis of biological networks and expression data
    • Sohler,F. et al. (2004) New methods for joint analysis of biological networks and expression data. Bioinformatics, 20, 1517-1521.
    • (2004) Bioinformatics , vol.20 , pp. 1517-1521
    • Sohler, F.1
  • 37
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz,P. et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature, 403, 623-627.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1
  • 38
    • 28444448000 scopus 로고    scopus 로고
    • Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues
    • Wachi,S. et al. (2005) Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues. Bioinformatics, 21, 4205-4208.
    • (2005) Bioinformatics , vol.21 , pp. 4205-4208
    • Wachi, S.1
  • 39
    • 3543099834 scopus 로고    scopus 로고
    • Evolution and topology in the yeast protein interaction network
    • Wuchty,S. (2004) Evolution and topology in the yeast protein interaction network. Genome Res., 14, 1310-1314.
    • (2004) Genome Res. , vol.14 , pp. 1310-1314
    • Wuchty, S.1
  • 40
    • 17444407091 scopus 로고    scopus 로고
    • Evolutionary cores of domain co-occurrence networks
    • Wuchty,S. and Almaas,E. (2005) Evolutionary cores of domain co-occurrence networks. BMC Evol. Biol., 5, 24.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 24
    • Wuchty, S.1    Almaas, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.