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Volumn 11, Issue , 2010, Pages

Chem2Bio2RDF: A semantic framework for linking and data mining chemogenomic and systems chemical biology data

Author keywords

[No Author keywords available]

Indexed keywords

ADVERSE DRUG REACTIONS; CHEMICAL BIOLOGY; GENERATION TOOLS; GENETIC VARIATION; MULTIPLE PATHWAYS; PATHWAY MAPPING; SEMANTIC FRAMEWORK; SEMANTIC SYSTEMS;

EID: 77953907294     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-255     Document Type: Article
Times cited : (191)

References (42)
  • 1
    • 70349402373 scopus 로고    scopus 로고
    • Mining large heterogeneous datasets in drug discovery
    • Wild DJ. Mining large heterogeneous datasets in drug discovery. Expert Opinion on Drug Discovery 2009, 4(10):995-1004.
    • (2009) Expert Opinion on Drug Discovery , vol.4 , Issue.10 , pp. 995-1004
    • Wild, D.J.1
  • 2
    • 45849112142 scopus 로고    scopus 로고
    • Beyond data integration
    • 10.1016/j.drudis.2008.01.008, 18598913
    • Slater T, Bouton C, Huang ES. Beyond data integration. Drug Discovery Today 2008, 13(13-14):584-9. 10.1016/j.drudis.2008.01.008, 18598913.
    • (2008) Drug Discovery Today , vol.13 , Issue.13-14 , pp. 584-589
    • Slater, T.1    Bouton, C.2    Huang, E.S.3
  • 3
    • 70349914727 scopus 로고    scopus 로고
    • PubChem as a Source of Polypharmacology
    • Chen B, Wild DJ, Guha R. PubChem as a Source of Polypharmacology. J Chem Inf and Model 2009, 49(9):2044-2055.
    • (2009) J Chem Inf and Model , vol.49 , Issue.9 , pp. 2044-2055
    • Chen, B.1    Wild, D.J.2    Guha, R.3
  • 4
    • 54249155522 scopus 로고    scopus 로고
    • Network Pharmacology: The Next Paradigm in Drug Discovery
    • 10.1038/nchembio.118, 18936753
    • Hopkins AL. Network Pharmacology: The Next Paradigm in Drug Discovery. Nat. Chem. Biol 2008, 4:682-690. 10.1038/nchembio.118, 18936753.
    • (2008) Nat. Chem. Biol , vol.4 , pp. 682-690
    • Hopkins, A.L.1
  • 6
    • 67049100457 scopus 로고    scopus 로고
    • Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors
    • 10.1371/journal.pcbi.1000387, 2676506, 19436720
    • Xie L, Li J, Xie L, Bourne PE. Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors. PLoS Comput Biol 2009, 5(5):e1000387. 10.1371/journal.pcbi.1000387, 2676506, 19436720.
    • (2009) PLoS Comput Biol , vol.5 , Issue.5
    • Xie, L.1    Li, J.2    Xie, L.3    Bourne, P.E.4
  • 7
    • 34447558299 scopus 로고    scopus 로고
    • Systems chemical biology
    • 10.1038/nchembio0807-447, 2734506, 17637771
    • Oprea TI, Tropsha A, Faulon J, Rintoul MD. Systems chemical biology. Nat Chem Biol 2007, 3:447-450. 10.1038/nchembio0807-447, 2734506, 17637771.
    • (2007) Nat Chem Biol , vol.3 , pp. 447-450
    • Oprea, T.I.1    Tropsha, A.2    Faulon, J.3    Rintoul, M.D.4
  • 9
    • 27244447569 scopus 로고    scopus 로고
    • A life science semantic web: are we there yet?
    • Neumann EK. A life science semantic web: are we there yet?. Science 2005, 283:22-5.
    • (2005) Science , vol.283 , pp. 22-25
    • Neumann, E.K.1
  • 11
    • 63549097414 scopus 로고    scopus 로고
    • Semantic web for integrated network analysis in biomedicine
    • 10.1093/bib/bbp002, 19304873
    • Chen H, Ding L, Wu Z, Yu T, Dhanapalan L, Chen JY. Semantic web for integrated network analysis in biomedicine. Brief Bioinform 2009, 10(2):177-92. 10.1093/bib/bbp002, 19304873.
    • (2009) Brief Bioinform , vol.10 , Issue.2 , pp. 177-192
    • Chen, H.1    Ding, L.2    Wu, Z.3    Yu, T.4    Dhanapalan, L.5    Chen, J.Y.6
  • 12
    • 84888275103 scopus 로고    scopus 로고
    • RDF
    • RDF. , http://www.w3.org/RDF
  • 13
    • 84888279011 scopus 로고    scopus 로고
    • SPARQL
    • SPARQL. , http://www.w3.org/TR/rdf-sparql-query/
  • 14
    • 48249158190 scopus 로고    scopus 로고
    • Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
    • 10.1016/j.jbi.2008.03.004, 18472304
    • Belleau F, Nolin MA, Tourigny N, Rigault P, Morissette J. Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. J Biomed Inform 2008, 41:706-716. 10.1016/j.jbi.2008.03.004, 18472304.
    • (2008) J Biomed Inform , vol.41 , pp. 706-716
    • Belleau, F.1    Nolin, M.A.2    Tourigny, N.3    Rigault, P.4    Morissette, J.5
  • 16
    • 84860531384 scopus 로고    scopus 로고
    • YeastHub: A semantic web use case for integrating data in the life sciences domain
    • 10.1093/bioinformatics/bti1026, 15961502
    • Cheung K, Yip K, Smith A, Deknikker R, Masiar A, Gerstein M. YeastHub: A semantic web use case for integrating data in the life sciences domain. Bioinformatics 2005, 21(Suppl 1):i85-96. 10.1093/bioinformatics/bti1026, 15961502.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Cheung, K.1    Yip, K.2    Smith, A.3    Deknikker, R.4    Masiar, A.5    Gerstein, M.6
  • 17
    • 52949097985 scopus 로고    scopus 로고
    • Towards a Semantic Knowledge base for Yeast biologists
    • 10.1016/j.jbi.2008.05.001, 18562252
    • Villanueva-Rosales N, Osbahr K, Doumontier M. Towards a Semantic Knowledge base for Yeast biologists. J Biomed Inform 2008, 41(5):779-89. 10.1016/j.jbi.2008.05.001, 18562252.
    • (2008) J Biomed Inform , vol.41 , Issue.5 , pp. 779-789
    • Villanueva-Rosales, N.1    Osbahr, K.2    Doumontier, M.3
  • 18
    • 39049178060 scopus 로고    scopus 로고
    • Biodash: a semantic web dashboard for drug development
    • Neumann EK, Quan D. Biodash: a semantic web dashboard for drug development. Pac Symp on Biocomput 2006, 11:176-187.
    • (2006) Pac Symp on Biocomput , vol.11 , pp. 176-187
    • Neumann, E.K.1    Quan, D.2
  • 20
    • 70449457508 scopus 로고    scopus 로고
    • A journey to Semantic Web query federation in the life sciences
    • 10.1186/1471-2105-10-S10-S10, 2755818, 19796394
    • Cheung K, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A. A journey to Semantic Web query federation in the life sciences. BMC Bioinformatics 2009, 10(Suppl 10):S10. 10.1186/1471-2105-10-S10-S10, 2755818, 19796394.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 10
    • Cheung, K.1    Frost, H.R.2    Marshall, M.S.3    Prud'hommeaux, E.4    Samwald, M.5    Zhao, J.6    Paschke, A.7
  • 22
    • 84888284498 scopus 로고    scopus 로고
    • ARQ
    • ARQ. , http://www.openjena.org/ARQ
  • 27
    • 0036249270 scopus 로고    scopus 로고
    • Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings
    • Holliday JD, Hu CY, Willett P. Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings. Comb Chem High Throughput Screen 2002, 5(2):155-66.
    • (2002) Comb Chem High Throughput Screen , vol.5 , Issue.2 , pp. 155-166
    • Holliday, J.D.1    Hu, C.Y.2    Willett, P.3
  • 28
    • 67849104638 scopus 로고    scopus 로고
    • PubChem: a public information system for analyzing bioactivities of small molecules
    • 10.1093/nar/gkp456, 2703903, 19498078
    • Wang Y, Xiao J, Suzek TO, Zhang J, Wang J, Bryant SH. PubChem: a public information system for analyzing bioactivities of small molecules. Nucl Acids Res 2009, 37:W623-W633. 10.1093/nar/gkp456, 2703903, 19498078.
    • (2009) Nucl Acids Res , vol.37
    • Wang, Y.1    Xiao, J.2    Suzek, T.O.3    Zhang, J.4    Wang, J.5    Bryant, S.H.6
  • 32
    • 33846108633 scopus 로고    scopus 로고
    • BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities
    • 10.1093/nar/gkl999, 1751547, 17145705
    • Liu T, Lin Y, Wen X, Jorissen RN, Gilson MK. BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. Nucl Acids Res 2007, 35:D198-D201. 10.1093/nar/gkl999, 1751547, 17145705.
    • (2007) Nucl Acids Res , vol.35
    • Liu, T.1    Lin, Y.2    Wen, X.3    Jorissen, R.N.4    Gilson, M.K.5
  • 35
    • 84888281415 scopus 로고    scopus 로고
    • QSAR sets
    • QSAR sets. , http://www.cheminformatics.org
  • 38
    • 37549025064 scopus 로고    scopus 로고
    • ERK-Dependent MKP-1-Mediated Cisplatin Resistance in Human Ovarian Cancer Cells
    • Wang J, Zhou JY, Wu GS. ERK-Dependent MKP-1-Mediated Cisplatin Resistance in Human Ovarian Cancer Cells. Cancer Res 2007, 67:3-1194.
    • (2007) Cancer Res , vol.67 , pp. 3-1194
    • Wang, J.1    Zhou, J.Y.2    Wu, G.S.3
  • 39
    • 0031763135 scopus 로고    scopus 로고
    • III Intracellular signaling in response to toxic liver injury
    • Jones BE, Czaja MJ. III Intracellular signaling in response to toxic liver injury. Am J Physiol 1998, 275(5 Pt 1):G874-878.
    • (1998) Am J Physiol , vol.275 , Issue.5 PART 1
    • Jones, B.E.1    Czaja, M.J.2
  • 40
    • 0035859871 scopus 로고    scopus 로고
    • Human hepatitis C virus NS5A protein alters intracellular calcium levels, induces oxidative stress, and activates STAT-3 and NF-kappa B
    • 10.1073/pnas.171311298, 55498, 11481452
    • Gong G, Waris G, Tanveer R, Siddiqui A. Human hepatitis C virus NS5A protein alters intracellular calcium levels, induces oxidative stress, and activates STAT-3 and NF-kappa B. Proc Natl Acad Sci USA 2001, 98(17):9599-9604. 10.1073/pnas.171311298, 55498, 11481452.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.17 , pp. 9599-9604
    • Gong, G.1    Waris, G.2    Tanveer, R.3    Siddiqui, A.4
  • 41
    • 0021845222 scopus 로고
    • Interaction of Amoxapine with Muscarinic Cholinergic Receptors - an in Vitro Assessment
    • 10.1016/0014-2999(85)90500-X, 4029261
    • Coupet J, Fisher SK, Rauh CE, Lai F, Beer B. Interaction of Amoxapine with Muscarinic Cholinergic Receptors - an in Vitro Assessment. Eur J Pharmacol 1985, 112:231-235. 10.1016/0014-2999(85)90500-X, 4029261.
    • (1985) Eur J Pharmacol , vol.112 , pp. 231-235
    • Coupet, J.1    Fisher, S.K.2    Rauh, C.E.3    Lai, F.4    Beer, B.5
  • 42
    • 0037238379 scopus 로고    scopus 로고
    • Effects of the 11 Beta-hydroxysteroid Dehydrogrenase Inhibitor Carbenoxolone on Insulin Sensitivity in Men with Type 2 Diabetes
    • 10.1210/jc.2002-021194, 12519867
    • Andrews RC, Rooyackers O, Walker BR. Effects of the 11 Beta-hydroxysteroid Dehydrogrenase Inhibitor Carbenoxolone on Insulin Sensitivity in Men with Type 2 Diabetes. J Clin Endocrinol Metab 2003, 88:285-291. 10.1210/jc.2002-021194, 12519867.
    • (2003) J Clin Endocrinol Metab , vol.88 , pp. 285-291
    • Andrews, R.C.1    Rooyackers, O.2    Walker, B.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.