-
1
-
-
84882455458
-
Single-cell sequencing-based technologies will revolutionize whole-organism science
-
Shapiro, E., Biezuner, T. and Linnarsson, S. (2013) Single-cell sequencing-based technologies will revolutionize whole-organism science. Nat. Rev. Genet., 14, 618-630.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 618-630
-
-
Shapiro, E.1
Biezuner, T.2
Linnarsson, S.3
-
2
-
-
70349466529
-
Population context determines cell-to-cell variability in endocytosis and virus infection
-
Snijder, B., Sacher, R., Ramo, P., Damm, E.M., Liberali, P. and Pelkmans, L. (2009) Population context determines cell-to-cell variability in endocytosis and virus infection. Nature, 461, 520-523.
-
(2009)
Nature
, vol.461
, pp. 520-523
-
-
Snijder, B.1
Sacher, R.2
Ramo, P.3
Damm, E.M.4
Liberali, P.5
Pelkmans, L.6
-
3
-
-
77950809059
-
A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations
-
Sharma, S.V., Lee, D.Y., Li, B., Quinlan, M.P., Takahashi, F., Maheswaran, S., McDermott, U., Azizian, N., Zou, L., Fischbach, M.A. et al. (2010) A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations. Cell, 141, 69-80.
-
(2010)
Cell
, vol.141
, pp. 69-80
-
-
Sharma, S.V.1
Lee, D.Y.2
Li, B.3
Quinlan, M.P.4
Takahashi, F.5
Maheswaran, S.6
McDermott, U.7
Azizian, N.8
Zou, L.9
Fischbach, M.A.10
-
4
-
-
84892181925
-
Internalization of Salmonella by macrophages induces formation of nonreplicating persisters
-
Helaine, S., Cheverton, A.M., Watson, K.G., Faure, L.M., Matthews, S.A. and Holden, D.W. (2014) Internalization of Salmonella by macrophages induces formation of nonreplicating persisters. Science, 343, 204-208.
-
(2014)
Science
, vol.343
, pp. 204-208
-
-
Helaine, S.1
Cheverton, A.M.2
Watson, K.G.3
Faure, L.M.4
Matthews, S.A.5
Holden, D.W.6
-
5
-
-
84880270290
-
Identification of a population of blood circulating tumor cells from breast cancer patients that initiates metastasis in a xenograft assay
-
Baccelli, I., Schneeweiss, A., Riethdorf, S., Stenzinger, A., Schillert, A., Vogel, V., Klein, C., Saini, M., Bauerle, T., Wallwiener, M. et al. (2013) Identification of a population of blood circulating tumor cells from breast cancer patients that initiates metastasis in a xenograft assay. Nat. Biotechnol., 31, 539-544.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 539-544
-
-
Baccelli, I.1
Schneeweiss, A.2
Riethdorf, S.3
Stenzinger, A.4
Schillert, A.5
Vogel, V.6
Klein, C.7
Saini, M.8
Bauerle, T.9
Wallwiener, M.10
-
6
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N.N., Anderson, I.J., Cheng, J.F., Darling, A., Malfatti, S., Swan, B.K., Gies, E.A. et al. (2013) Insights into the phylogeny and coding potential of microbial dark matter. Nature, 499, 431-437.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.F.6
Darling, A.7
Malfatti, S.8
Swan, B.K.9
Gies, E.A.10
-
7
-
-
72849144434
-
Sequencing technologies - The next generation
-
Metzker, M.L. (2010) Sequencing technologies - the next generation. Nat. Rev. Genet., 11, 31-46.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
8
-
-
84863697677
-
From single cells to deep phenotypes in cancer
-
Bendall, S.C. and Nolan, G.P. (2012) From single cells to deep phenotypes in cancer. Nat. Biotechnol., 30, 639-647.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 639-647
-
-
Bendall, S.C.1
Nolan, G.P.2
-
9
-
-
80755168360
-
Genomic analysis at the single-cell level
-
Kalisky, T., Blainey, P. and Quake, S.R. (2011) Genomic analysis at the single-cell level. Annu. Rev. Genet., 45, 431-445.
-
(2011)
Annu. Rev. Genet.
, vol.45
, pp. 431-445
-
-
Kalisky, T.1
Blainey, P.2
Quake, S.R.3
-
10
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Nagalakshmi, U., Wang, Z., Waern, K., Shou, C., Raha, D., Gerstein, M. and Snyder, M. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science, 320, 1344-1349.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
11
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M. and Snyder, M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet., 10, 57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
12
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali, S., Davis, C.A., Merkel, A., Dobin, A., Lassmann, T., Mortazavi, A., Tanzer, A., Lagarde, J., Lin, W., Schlesinger, F. et al. (2012) Landscape of transcription in human cells. Nature, 489, 101-108.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
Lin, W.9
Schlesinger, F.10
-
13
-
-
84879671055
-
Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs
-
Hangauer, M.J., Vaughn, I.W. and McManus, M.T. (2013) Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs. PLoS Genet., 9, e1003569.
-
(2013)
PLoS Genet.
, vol.9
-
-
Hangauer, M.J.1
Vaughn, I.W.2
McManus, M.T.3
-
14
-
-
84877574893
-
Extensive transcriptional heterogeneity revealed by isoform profiling
-
Pelechano, V., Wei, W. and Steinmetz, L.M. (2013) Extensive transcriptional heterogeneity revealed by isoform profiling. Nature, 497, 127-131.
-
(2013)
Nature
, vol.497
, pp. 127-131
-
-
Pelechano, V.1
Wei, W.2
Steinmetz, L.M.3
-
15
-
-
0344237410
-
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
-
Vogel, J., Bartels, V., Tang, T.H., Churakov, G., Slagter-Jager, J.G., Huttenhofer, A. and Wagner, E.G. (2003) RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res., 31, 6435-6443.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jager, J.G.5
Huttenhofer, A.6
Wagner, E.G.7
-
16
-
-
84860742976
-
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
-
Kroger, C., Dillon, S.C., Cameron, A.D., Papenfort, K., Sivasankaran, S.K., Hokamp, K., Chao, Y., Sittka, A., Hebrard, M., Handler, K. et al. (2012) The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc. Natl. Acad. Sci. U.S.A., 109, E1277-E1286.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
-
-
Kroger, C.1
Dillon, S.C.2
Cameron, A.D.3
Papenfort, K.4
Sivasankaran, S.K.5
Hokamp, K.6
Chao, Y.7
Sittka, A.8
Hebrard, M.9
Handler, K.10
-
17
-
-
80053649020
-
The transcriptional landscape of Chlamydia pneumoniae
-
Albrecht, M., Sharma, C.M., Dittrich, M.T., Muller, T., Reinhardt, R., Vogel, J. and Rudel, T. (2011) The transcriptional landscape of Chlamydia pneumoniae. Genome Biol., 12, R98.
-
(2011)
Genome Biol.
, vol.12
-
-
Albrecht, M.1
Sharma, C.M.2
Dittrich, M.T.3
Muller, T.4
Reinhardt, R.5
Vogel, J.6
Rudel, T.7
-
18
-
-
84857683425
-
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
-
Nicolas, P., Mader, U., Dervyn, E., Rochat, T., Leduc, A., Pigeonneau, N., Bidnenko, E., Marchadier, E., Hoebeke, M., Aymerich, S. et al. (2012) Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science, 335, 1103-1106.
-
(2012)
Science
, vol.335
, pp. 1103-1106
-
-
Nicolas, P.1
Mader, U.2
Dervyn, E.3
Rochat, T.4
Leduc, A.5
Pigeonneau, N.6
Bidnenko, E.7
Marchadier, E.8
Hoebeke, M.9
Aymerich, S.10
-
19
-
-
78049392640
-
Identification of regulatory RNAs in Bacillus subtilis
-
Irnov, I., Sharma, C.M., Vogel, J. and Winkler, W.C. (2010) Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res., 38, 6637-6651.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 6637-6651
-
-
Irnov, I.1
Sharma, C.M.2
Vogel, J.3
Winkler, W.C.4
-
20
-
-
70849119931
-
Transcriptome complexity in a genome-reduced bacterium
-
Guell, M., van Noort, V., Yus, E., Chen, W.H., Leigh-Bell, J., Michalodimitrakis, K., Yamada, T., Arumugam, M., Doerks, T., Kuhner, S. et al. (2009) Transcriptome complexity in a genome-reduced bacterium. Science, 326, 1268-1271.
-
(2009)
Science
, vol.326
, pp. 1268-1271
-
-
Guell, M.1
Van Noort, V.2
Yus, E.3
Chen, W.H.4
Leigh-Bell, J.5
Michalodimitrakis, K.6
Yamada, T.7
Arumugam, M.8
Doerks, T.9
Kuhner, S.10
-
21
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
Sharma, C.M., Hoffmann, S., Darfeuille, F., Reignier, J., Findeiss, S., Sittka, A., Chabas, S., Reiche, K., Hackermuller, J., Reinhardt, R. et al. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature, 464, 250-255.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
Sittka, A.6
Chabas, S.7
Reiche, K.8
Hackermuller, J.9
Reinhardt, R.10
-
22
-
-
84055200530
-
Genome-wide antisense transcription drives mRNA processing in bacteria
-
Lasa, I., Toledo-Arana, A., Dobin, A., Villanueva, M., de los Mozos, I.R., Vergara-Irigaray, M., Segura, V., Fagegaltier, D., Penades, J.R., Valle, J. et al. (2011) Genome-wide antisense transcription drives mRNA processing in bacteria. Proc. Natl. Acad. Sci. U.S.A., 108, 20172-20177.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 20172-20177
-
-
Lasa, I.1
Toledo-Arana, A.2
Dobin, A.3
Villanueva, M.4
De Los Mozos, I.R.5
Vergara-Irigaray, M.6
Segura, V.7
Fagegaltier, D.8
Penades, J.R.9
Valle, J.10
-
23
-
-
79958034240
-
The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages
-
Mraheil, M.A., Billion, A., Mohamed, W., Mukherjee, K., Kuenne, C., Pischimarov, J., Krawitz, C., Retey, J., Hartsch, T., Chakraborty, T. et al. (2011) The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages. Nucleic Acids Res., 39, 4235-4248.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4235-4248
-
-
Mraheil, M.A.1
Billion, A.2
Mohamed, W.3
Mukherjee, K.4
Kuenne, C.5
Pischimarov, J.6
Krawitz, C.7
Retey, J.8
Hartsch, T.9
Chakraborty, T.10
-
24
-
-
84860715141
-
Comparative transcriptomics of pathogenic and non-pathogenic Listeria species
-
Wurtzel, O., Sesto, N., Mellin, J.R., Karunker, I., Edelheit, S., Becavin, C., Archambaud, C., Cossart, P. and Sorek, R. (2012) Comparative transcriptomics of pathogenic and non-pathogenic Listeria species. Mol. Syst. Biol., 8, 583.
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 583
-
-
Wurtzel, O.1
Sesto, N.2
Mellin, J.R.3
Karunker, I.4
Edelheit, S.5
Becavin, C.6
Archambaud, C.7
Cossart, P.8
Sorek, R.9
-
25
-
-
84878482772
-
High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates
-
Dugar, G., Herbig, A., Forstner, K.U., Heidrich, N., Reinhardt, R., Nieselt, K. and Sharma, C.M. (2013) High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates. PLoS Genet., 9, e1003495.
-
(2013)
PLoS Genet.
, vol.9
-
-
Dugar, G.1
Herbig, A.2
Forstner, K.U.3
Heidrich, N.4
Reinhardt, R.5
Nieselt, K.6
Sharma, C.M.7
-
26
-
-
79958047291
-
Cis-Antisense RNA, another level of gene regulation in bacteria
-
Georg, J. and Hess, W.R. (2011) cis-Antisense RNA, another level of gene regulation in bacteria. Microbiol. Mol. Biol. Rev., 75, 286-300.
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 286-300
-
-
Georg, J.1
Hess, W.R.2
-
27
-
-
74949137952
-
A single-base resolution map of an archaeal transcriptome
-
Wurtzel, O., Sapra, R., Chen, F., Zhu, Y., Simmons, B.A. and Sorek, R. (2010) A single-base resolution map of an archaeal transcriptome. Genome Res., 20, 133-141.
-
(2010)
Genome Res.
, vol.20
, pp. 133-141
-
-
Wurtzel, O.1
Sapra, R.2
Chen, F.3
Zhu, Y.4
Simmons, B.A.5
Sorek, R.6
-
28
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
Kapranov, P., Willingham, A.T. and Gingeras, T.R. (2007) Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet., 8, 413-423.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
-
29
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov, P., Cheng, J., Dike, S., Nix, D.A., Duttagupta, R., Willingham, A.T., Stadler, P.F., Hertel, J., Hackermuller, J., Hofacker, I.L. et al. (2007) RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science, 316, 1484-1488.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
-
30
-
-
84887995915
-
Gene regulation by antisense transcription
-
Pelechano, V. and Steinmetz, L.M. (2013) Gene regulation by antisense transcription. Nat. Rev. Genet., 14, 880-893.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 880-893
-
-
Pelechano, V.1
Steinmetz, L.M.2
-
31
-
-
70449953975
-
The complex eukaryotic transcriptome: Unexpected pervasive transcription and novel small RNAs
-
Jacquier, A. (2009) The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat. Rev. Genet., 10, 833-844.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 833-844
-
-
Jacquier, A.1
-
32
-
-
84893351549
-
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
-
Rouskin, S., Zubradt, M., Washietl, S., Kellis, M. and Weissman, J.S. (2014) Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo. Nature, 505, 701-705.
-
(2014)
Nature
, vol.505
, pp. 701-705
-
-
Rouskin, S.1
Zubradt, M.2
Washietl, S.3
Kellis, M.4
Weissman, J.S.5
-
33
-
-
84865858631
-
RNA editing in the human ENCODE RNA-seq data
-
Park, E., Williams, B., Wold, B.J. and Mortazavi, A. (2012) RNA editing in the human ENCODE RNA-seq data. Genome Res., 22, 1626-1633.
-
(2012)
Genome Res.
, vol.22
, pp. 1626-1633
-
-
Park, E.1
Williams, B.2
Wold, B.J.3
Mortazavi, A.4
-
34
-
-
84894131718
-
Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast
-
Geisberg, J.V., Moqtaderi, Z., Fan, X., Ozsolak, F. and Struhl, K. (2014) Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast. Cell, 156, 812-824.
-
(2014)
Cell
, vol.156
, pp. 812-824
-
-
Geisberg, J.V.1
Moqtaderi, Z.2
Fan, X.3
Ozsolak, F.4
Struhl, K.5
-
35
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N.T., Ghaemmaghami, S., Newman, J.R. and Weissman, J.S. (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science, 324, 218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
36
-
-
84861969926
-
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
-
Castello, A., Fischer, B., Eichelbaum, K., Horos, R., Beckmann, B.M., Strein, C., Davey, N.E., Humphreys, D.T., Preiss, T., Steinmetz, L.M. et al. (2012) Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell, 149, 1393-1406.
-
(2012)
Cell
, vol.149
, pp. 1393-1406
-
-
Castello, A.1
Fischer, B.2
Eichelbaum, K.3
Horos, R.4
Beckmann, B.M.5
Strein, C.6
Davey, N.E.7
Humphreys, D.T.8
Preiss, T.9
Steinmetz, L.M.10
-
37
-
-
84895069488
-
Quantitative single-cell RNA-seq with unique molecular identifiers
-
Islam, S., Zeisel, A., Joost, S., La Manno, G., Zajac, P., Kasper, M., Lonnerberg, P. and Linnarsson, S. (2014) Quantitative single-cell RNA-seq with unique molecular identifiers. Nat. Methods, 11, 163-166.
-
(2014)
Nat. Methods
, vol.11
, pp. 163-166
-
-
Islam, S.1
Zeisel, A.2
Joost, S.3
La Manno, G.4
Zajac, P.5
Kasper, M.6
Lonnerberg, P.7
Linnarsson, S.8
-
38
-
-
84889242115
-
Genetic determinants and cellular constraints in noisy gene expression
-
Sanchez, A. and Golding, I. (2013) Genetic determinants and cellular constraints in noisy gene expression. Science, 342, 1188-1193.
-
(2013)
Science
, vol.342
, pp. 1188-1193
-
-
Sanchez, A.1
Golding, I.2
-
39
-
-
84868028972
-
Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells
-
Marguerat, S., Schmidt, A., Codlin, S., Chen, W., Aebersold, R. and Bahler, J. (2012) Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell, 151, 671-683.
-
(2012)
Cell
, vol.151
, pp. 671-683
-
-
Marguerat, S.1
Schmidt, A.2
Codlin, S.3
Chen, W.4
Aebersold, R.5
Bahler, J.6
-
40
-
-
77955102352
-
Quantifying E. Coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi, Y., Choi, P.J., Li, G.W., Chen, H., Babu, M., Hearn, J., Emili, A. and Xie, X.S. (2010) Quantifying E. Coli proteome and transcriptome with single-molecule sensitivity in single cells. Science, 329, 533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
Hearn, J.6
Emili, A.7
Xie, X.S.8
-
41
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
Chang, H.H., Hemberg, M., Barahona, M., Ingber, D.E. and Huang, S. (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature, 453, 544-547.
-
(2008)
Nature
, vol.453
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
42
-
-
0037008488
-
Single-cell gene expression profiling
-
Levsky, J.M., Shenoy, S.M., Pezo, R.C. and Singer, R.H. (2002) Single-cell gene expression profiling. Science, 297, 836-840.
-
(2002)
Science
, vol.297
, pp. 836-840
-
-
Levsky, J.M.1
Shenoy, S.M.2
Pezo, R.C.3
Singer, R.H.4
-
43
-
-
84878997106
-
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
-
Shalek, A.K., Satija, R., Adiconis, X., Gertner, R.S., Gaublomme, J.T., Raychowdhury, R., Schwartz, S., Yosef, N., Malboeuf, C., Lu, D. et al. (2013) Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells. Nature, 498, 236-240.
-
(2013)
Nature
, vol.498
, pp. 236-240
-
-
Shalek, A.K.1
Satija, R.2
Adiconis, X.3
Gertner, R.S.4
Gaublomme, J.T.5
Raychowdhury, R.6
Schwartz, S.7
Yosef, N.8
Malboeuf, C.9
Lu, D.10
-
44
-
-
84892179132
-
Single-cell RNA-seq reveals dynamic
-
random monoallelic gene expression in mammalian cells
-
Deng, Q., Ramskold, D., Reinius, B. and Sandberg, R. (2014) Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells. Science, 343, 193-196.
-
(2014)
Science
, vol.343
, pp. 193-196
-
-
Deng, Q.1
Ramskold, D.2
Reinius, B.3
Sandberg, R.4
-
45
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., Lennon, N.J., Livak, K.J., Mikkelsen, T.S. and Rinn, J.L. (2014) The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat. Biotechnol., 32, 381-386.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 381-386
-
-
Trapnell, C.1
Cacchiarelli, D.2
Grimsby, J.3
Pokharel, P.4
Li, S.5
Morse, M.6
Lennon, N.J.7
Livak, K.J.8
Mikkelsen, T.S.9
Rinn, J.L.10
-
46
-
-
33746788900
-
Quantum dot semiconductor nanocrystals for immunophenotyping by polychromatic flow cytometry
-
Chattopadhyay, P.K., Price, D.A., Harper, T.F., Betts, M.R., Yu, J., Gostick, E., Perfetto, S.P., Goepfert, P., Koup, R.A., De Rosa, S.C. et al. (2006) Quantum dot semiconductor nanocrystals for immunophenotyping by polychromatic flow cytometry. Nat. Med., 12, 972-977.
-
(2006)
Nat. Med.
, vol.12
, pp. 972-977
-
-
Chattopadhyay, P.K.1
Price, D.A.2
Harper, T.F.3
Betts, M.R.4
Yu, J.5
Gostick, E.6
Perfetto, S.P.7
Goepfert, P.8
Koup, R.A.9
De Rosa, S.C.10
-
47
-
-
84865592340
-
Cytometry: Today's technology and tomorrow's horizons
-
Chattopadhyay, P.K. and Roederer, M. (2012) Cytometry: today's technology and tomorrow's horizons. Methods, 57, 251-258.
-
(2012)
Methods
, vol.57
, pp. 251-258
-
-
Chattopadhyay, P.K.1
Roederer, M.2
-
48
-
-
80053997259
-
A human memory T cell subset with stem cell-like properties
-
Gattinoni, L., Lugli, E., Ji, Y., Pos, Z., Paulos, C.M., Quigley, M.F., Almeida, J.R., Gostick, E., Yu, Z., Carpenito, C. et al. (2011) A human memory T cell subset with stem cell-like properties. Nat. Med., 17, 1290-1297.
-
(2011)
Nat. Med.
, vol.17
, pp. 1290-1297
-
-
Gattinoni, L.1
Lugli, E.2
Ji, Y.3
Pos, Z.4
Paulos, C.M.5
Quigley, M.F.6
Almeida, J.R.7
Gostick, E.8
Yu, Z.9
Carpenito, C.10
-
49
-
-
83255177150
-
Single-cell dissection of transcriptional heterogeneity in human colon tumors
-
Dalerba, P., Kalisky, T., Sahoo, D., Rajendran, P.S., Rothenberg, M.E., Leyrat, A.A., Sim, S., Okamoto, J., Johnston, D.M., Qian, D. et al. (2011) Single-cell dissection of transcriptional heterogeneity in human colon tumors. Nat. Biotechnol., 29, 1120-1127.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 1120-1127
-
-
Dalerba, P.1
Kalisky, T.2
Sahoo, D.3
Rajendran, P.S.4
Rothenberg, M.E.5
Leyrat, A.A.6
Sim, S.7
Okamoto, J.8
Johnston, D.M.9
Qian, D.10
-
50
-
-
3242683662
-
Single cell profiling of potentiated phospho-protein networks in cancer cells
-
Irish, J.M., Hovland, R., Krutzik, P.O., Perez, O.D., Bruserud, O., Gjertsen, B.T. and Nolan, G.P. (2004) Single cell profiling of potentiated phospho-protein networks in cancer cells. Cell, 118, 217-228.
-
(2004)
Cell
, vol.118
, pp. 217-228
-
-
Irish, J.M.1
Hovland, R.2
Krutzik, P.O.3
Perez, O.D.4
Bruserud, O.5
Gjertsen, B.T.6
Nolan, G.P.7
-
51
-
-
77951643590
-
Identifying single-cell molecular programs by stochastic profiling
-
Janes, K.A., Wang, C.C., Holmberg, K.J., Cabral, K. and Brugge, J.S. (2010) Identifying single-cell molecular programs by stochastic profiling. Nat. Methods, 7, 311-317.
-
(2010)
Nat. Methods
, vol.7
, pp. 311-317
-
-
Janes, K.A.1
Wang, C.C.2
Holmberg, K.J.3
Cabral, K.4
Brugge, J.S.5
-
52
-
-
84899902525
-
Transcriptional profiling of cells sorted by RNA abundance
-
Klemm, S., Semrau, S., Wiebrands, K., Mooijman, D., Faddah, D.A., Jaenisch, R. and van Oudenaarden, A. (2014) Transcriptional profiling of cells sorted by RNA abundance. Nat. Methods, 11, 549-551.
-
(2014)
Nat. Methods
, vol.11
, pp. 549-551
-
-
Klemm, S.1
Semrau, S.2
Wiebrands, K.3
Mooijman, D.4
Faddah, D.A.5
Jaenisch, R.6
Van Oudenaarden, A.7
-
53
-
-
73849145104
-
A global view of protein expression in human cells, tissues, and organs
-
Ponten, F., Gry, M., Fagerberg, L., Lundberg, E., Asplund, A., Berglund, L., Oksvold, P., Bjorling, E., Hober, S., Kampf, C. et al. (2009) A global view of protein expression in human cells, tissues, and organs. Mol. Syst. Biol., 5, 337.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 337
-
-
Ponten, F.1
Gry, M.2
Fagerberg, L.3
Lundberg, E.4
Asplund, A.5
Berglund, L.6
Oksvold, P.7
Bjorling, E.8
Hober, S.9
Kampf, C.10
-
54
-
-
77957075043
-
Microfluidic sorting and multimodal typing of cancer cells in self-assembled magnetic arrays
-
Saliba, A.E., Saias, L., Psychari, E., Minc, N., Simon, D., Bidard, F.C., Mathiot, C., Pierga, J.Y., Fraisier, V., Salamero, J. et al. (2010) Microfluidic sorting and multimodal typing of cancer cells in self-assembled magnetic arrays. Proc. Natl. Acad. Sci. U.S.A., 107, 14524-14529.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 14524-14529
-
-
Saliba, A.E.1
Saias, L.2
Psychari, E.3
Minc, N.4
Simon, D.5
Bidard, F.C.6
Mathiot, C.7
Pierga, J.Y.8
Fraisier, V.9
Salamero, J.10
-
55
-
-
79959557893
-
An imaging flow cytometric method for measuring cell division history and molecular symmetry during mitosis
-
Filby, A., Perucha, E., Summers, H., Rees, P., Chana, P., Heck, S., Lord, G.M. and Davies, D. (2011) An imaging flow cytometric method for measuring cell division history and molecular symmetry during mitosis. Cytometry A, 79, 496-506.
-
(2011)
Cytometry A
, vol.79
, pp. 496-506
-
-
Filby, A.1
Perucha, E.2
Summers, H.3
Rees, P.4
Chana, P.5
Heck, S.6
Lord, G.M.7
Davies, D.8
-
56
-
-
84863938828
-
High-throughput single-microparticle imaging flow analyzer
-
Goda, K., Ayazi, A., Gossett, D.R., Sadasivam, J., Lonappan, C.K., Sollier, E., Fard, A.M., Hur, S.C., Adam, J., Murray, C. et al. (2012) High-throughput single-microparticle imaging flow analyzer. Proc. Natl. Acad. Sci. U.S.A., 109, 11630-11635.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 11630-11635
-
-
Goda, K.1
Ayazi, A.2
Gossett, D.R.3
Sadasivam, J.4
Lonappan, C.K.5
Sollier, E.6
Fard, A.M.7
Hur, S.C.8
Adam, J.9
Murray, C.10
-
57
-
-
80355127997
-
Transcriptome analysis of single cells
-
Morris, J., Singh, J.M. and Eberwine, J.H. (2011) Transcriptome analysis of single cells. J. Vis. Exp., 50, e2634.
-
(2011)
J. Vis. Exp.
, vol.50
-
-
Morris, J.1
Singh, J.M.2
Eberwine, J.H.3
-
58
-
-
84861115379
-
Comprehensive qPCR profiling of gene expression in single neuronal cells
-
Citri, A., Pang, Z.P., Sudhof, T.C., Wernig, M. and Malenka, R.C. (2011) Comprehensive qPCR profiling of gene expression in single neuronal cells. Nat. Protoc., 7, 118-127.
-
(2011)
Nat. Protoc.
, vol.7
, pp. 118-127
-
-
Citri, A.1
Pang, Z.P.2
Sudhof, T.C.3
Wernig, M.4
Malenka, R.C.5
-
59
-
-
0012315579
-
-
3rd Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Nagy, A., Gertsensten, M., Vintersten, K. and Behringer, R. (2003) Manipulating the Mouse Embryo: A Laboratory Manual. 3rd Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2003)
Manipulating the Mouse Embryo: A Laboratory Manual
-
-
Nagy, A.1
Gertsensten, M.2
Vintersten, K.3
Behringer, R.4
-
60
-
-
0033758599
-
New techniques for isolation of single prokaryotic cells
-
Frohlich, J. and Konig, H. (2000) New techniques for isolation of single prokaryotic cells. FEMS Microbiol. Rev., 24, 567-572.
-
(2000)
FEMS Microbiol. Rev.
, vol.24
, pp. 567-572
-
-
Frohlich, J.1
Konig, H.2
-
61
-
-
0029061139
-
Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis
-
Huber, R., Burggraf, S., Mayer, T., Barns, S.M., Rossnagel, P. and Stetter, K.O. (1995) Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis. Nature, 376, 57-58.
-
(1995)
Nature
, vol.376
, pp. 57-58
-
-
Huber, R.1
Burggraf, S.2
Mayer, T.3
Barns, S.M.4
Rossnagel, P.5
Stetter, K.O.6
-
62
-
-
84873693589
-
An automated system for high-throughput single cell-based breeding
-
Yoshimoto, N., Kida, A., Jie, X., Kurokawa, M., Iijima, M., Niimi, T., Maturana, A.D., Nikaido, I., Ueda, H.R., Tatematsu, K. et al. (2013) An automated system for high-throughput single cell-based breeding. Sci. Rep., 3, 1191.
-
(2013)
Sci. Rep.
, vol.3
, pp. 1191
-
-
Yoshimoto, N.1
Kida, A.2
Jie, X.3
Kurokawa, M.4
Iijima, M.5
Niimi, T.6
Maturana, A.D.7
Nikaido, I.8
Ueda, H.R.9
Tatematsu, K.10
-
63
-
-
37249018503
-
Intuitive, image-based cell sorting using optofluidic cell sorting
-
Kovac, J.R. and Voldman, J. (2007) Intuitive, image-based cell sorting using optofluidic cell sorting. Anal. Chem., 79, 9321-9330.
-
(2007)
Anal. Chem.
, vol.79
, pp. 9321-9330
-
-
Kovac, J.R.1
Voldman, J.2
-
64
-
-
79952050667
-
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis
-
Blainey, P.C., Mosier, A.C., Potanina, A., Francis, C.A. and Quake, S.R. (2011) Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One, 6, e16626.
-
(2011)
PLoS One
, vol.6
-
-
Blainey, P.C.1
Mosier, A.C.2
Potanina, A.3
Francis, C.A.4
Quake, S.R.5
-
65
-
-
84884572248
-
Optofluidic cell selection from complex microbial communities for single-genome analysis
-
Landry, Z.C., Giovanonni, S.J., Quake, S.R. and Blainey, P.C. (2013) Optofluidic cell selection from complex microbial communities for single-genome analysis. Methods Enzymol., 531, 61-90.
-
(2013)
Methods Enzymol.
, vol.531
, pp. 61-90
-
-
Landry, Z.C.1
Giovanonni, S.J.2
Quake, S.R.3
Blainey, P.C.4
-
66
-
-
84896284039
-
The present and future role of microfluidics in biomedical research
-
Sackmann, E.K., Fulton, A.L. and Beebe, D.J. (2014) The present and future role of microfluidics in biomedical research. Nature, 507, 181-189.
-
(2014)
Nature
, vol.507
, pp. 181-189
-
-
Sackmann, E.K.1
Fulton, A.L.2
Beebe, D.J.3
-
67
-
-
34547540925
-
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
-
Marcy, Y., Ouverney, C., Bik, E.M., Losekann, T., Ivanova, N., Martin, H.G., Szeto, E., Platt, D., Hugenholtz, P., Relman, D.A. et al. (2007) Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc. Natl. Acad. Sci. U.S.A., 104, 11889-11894.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 11889-11894
-
-
Marcy, Y.1
Ouverney, C.2
Bik, E.M.3
Losekann, T.4
Ivanova, N.5
Martin, H.G.6
Szeto, E.7
Platt, D.8
Hugenholtz, P.9
Relman, D.A.10
-
68
-
-
79952351866
-
Digital MDA for enumeration of total nucleic acid contamination
-
Blainey, P.C. and Quake, S.R. (2011) Digital MDA for enumeration of total nucleic acid contamination. Nucleic Acids Res., 39, e19.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Blainey, P.C.1
Quake, S.R.2
-
69
-
-
33749510846
-
Deterministic hydrodynamics: Taking blood apart
-
Davis, J.A., Inglis, D.W., Morton, K.J., Lawrence, D.A., Huang, L.R., Chou, S.Y., Sturm, J.C. and Austin, R.H. (2006) Deterministic hydrodynamics: taking blood apart. Proc. Natl. Acad. Sci. U.S.A., 103, 14779-14784.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 14779-14784
-
-
Davis, J.A.1
Inglis, D.W.2
Morton, K.J.3
Lawrence, D.A.4
Huang, L.R.5
Chou, S.Y.6
Sturm, J.C.7
Austin, R.H.8
-
70
-
-
84861216623
-
Hydrodynamic stretching of single cells for large population mechanical phenotyping
-
Gossett, D.R., Tse, H.T., Lee, S.A., Ying, Y., Lindgren, A.G., Yang, O.O., Rao, J., Clark, A.T. and Di Carlo, D. (2012) Hydrodynamic stretching of single cells for large population mechanical phenotyping. Proc. Natl. Acad. Sci. U.S.A., 109, 7630-7635.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 7630-7635
-
-
Gossett, D.R.1
Tse, H.T.2
Lee, S.A.3
Ying, Y.4
Lindgren, A.G.5
Yang, O.O.6
Rao, J.7
Clark, A.T.8
Di Carlo, D.9
-
71
-
-
84869237943
-
Microfluidics separation reveals the stem-cell-like deformability of tumor-initiating cells
-
Zhang, W., Kai, K., Choi, D.S., Iwamoto, T., Nguyen, Y.H., Wong, H., Landis, M.D., Ueno, N.T., Chang, J. and Qin, L. (2012) Microfluidics separation reveals the stem-cell-like deformability of tumor-initiating cells. Proc. Natl. Acad. Sci. U.S.A., 109, 18707-18712.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 18707-18712
-
-
Zhang, W.1
Kai, K.2
Choi, D.S.3
Iwamoto, T.4
Nguyen, Y.H.5
Wong, H.6
Landis, M.D.7
Ueno, N.T.8
Chang, J.9
Qin, L.10
-
72
-
-
84881047913
-
Microfluidic genome-wide profiling of intrinsic electrical properties in Saccharomyces cerevisiae
-
Vahey, M.D., Quiros Pesudo, L., Svensson, J.P., Samson, L.D. and Voldman, J. (2013) Microfluidic genome-wide profiling of intrinsic electrical properties in Saccharomyces cerevisiae. Lab Chip, 13, 2754-2763.
-
(2013)
Lab Chip
, vol.13
, pp. 2754-2763
-
-
Vahey, M.D.1
Quiros Pesudo, L.2
Svensson, J.P.3
Samson, L.D.4
Voldman, J.5
-
73
-
-
55449118859
-
A microfluidics approach for the isolation of nucleated red blood cells (NRBCs) from the peripheral blood of pregnant women
-
Huang, R., Barber, T.A., Schmidt, M.A., Tompkins, R.G., Toner, M., Bianchi, D.W., Kapur, R. and Flejter, W.L. (2008) A microfluidics approach for the isolation of nucleated red blood cells (NRBCs) from the peripheral blood of pregnant women. Prenat. Diagn., 28, 892-899.
-
(2008)
Prenat. Diagn.
, vol.28
, pp. 892-899
-
-
Huang, R.1
Barber, T.A.2
Schmidt, M.A.3
Tompkins, R.G.4
Toner, M.5
Bianchi, D.W.6
Kapur, R.7
Flejter, W.L.8
-
74
-
-
84890317645
-
Quantitative diagnosis of malignant pleural effusions by single-cell mechanophenotyping
-
Tse, H.T., Gossett, D.R., Moon, Y.S., Masaeli, M., Sohsman, M., Ying, Y., Mislick, K., Adams, R.P., Rao, J. and Di Carlo, D. (2013) Quantitative diagnosis of malignant pleural effusions by single-cell mechanophenotyping. Sci. Transl. Med., 5, 212ra163.
-
(2013)
Sci. Transl. Med.
, vol.5
-
-
Tse, H.T.1
Gossett, D.R.2
Moon, Y.S.3
Masaeli, M.4
Sohsman, M.5
Ying, Y.6
Mislick, K.7
Adams, R.P.8
Rao, J.9
Di Carlo, D.10
-
75
-
-
84895449750
-
Microfluidic, marker-free isolation of circulating tumor cells from blood samples
-
Karabacak, N.M., Spuhler, P.S., Fachin, F., Lim, E.J., Pai, V., Ozkumur, E., Martel, J.M., Kojic, N., Smith, K., Chen, P.I. et al. (2014) Microfluidic, marker-free isolation of circulating tumor cells from blood samples. Nat. Protoc., 9, 694-710.
-
(2014)
Nat. Protoc.
, vol.9
, pp. 694-710
-
-
Karabacak, N.M.1
Spuhler, P.S.2
Fachin, F.3
Lim, E.J.4
Pai, V.5
Ozkumur, E.6
Martel, J.M.7
Kojic, N.8
Smith, K.9
Chen, P.I.10
-
76
-
-
84875970076
-
Inertial focusing for tumor antigen-dependent and -independent sorting of rare circulating tumor cells
-
Ozkumur, E., Shah, A.M., Ciciliano, J.C., Emmink, B.L., Miyamoto, D.T., Brachtel, E., Yu, M., Chen, P.I., Morgan, B., Trautwein, J. et al. (2013) Inertial focusing for tumor antigen-dependent and -independent sorting of rare circulating tumor cells. Sci. Transl. Med., 5, 179ra147.
-
(2013)
Sci. Transl. Med.
, vol.5
-
-
Ozkumur, E.1
Shah, A.M.2
Ciciliano, J.C.3
Emmink, B.L.4
Miyamoto, D.T.5
Brachtel, E.6
Yu, M.7
Chen, P.I.8
Morgan, B.9
Trautwein, J.10
-
77
-
-
84873811988
-
Circulating breast tumor cells exhibit dynamic changes in epithelial and mesenchymal composition
-
Yu, M., Bardia, A., Wittner, B.S., Stott, S.L., Smas, M.E., Ting, D.T., Isakoff, S.J., Ciciliano, J.C., Wells, M.N., Shah, A.M. et al. (2013) Circulating breast tumor cells exhibit dynamic changes in epithelial and mesenchymal composition. Science, 339, 580-584.
-
(2013)
Science
, vol.339
, pp. 580-584
-
-
Yu, M.1
Bardia, A.2
Wittner, B.S.3
Stott, S.L.4
Smas, M.E.5
Ting, D.T.6
Isakoff, S.J.7
Ciciliano, J.C.8
Wells, M.N.9
Shah, A.M.10
-
78
-
-
84864285223
-
RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis
-
Yu, M., Ting, D.T., Stott, S.L., Wittner, B.S., Ozsolak, F., Paul, S., Ciciliano, J.C., Smas, M.E., Winokur, D., Gilman, A.J. et al. (2012) RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis. Nature, 487, 510-513.
-
(2012)
Nature
, vol.487
, pp. 510-513
-
-
Yu, M.1
Ting, D.T.2
Stott, S.L.3
Wittner, B.S.4
Ozsolak, F.5
Paul, S.6
Ciciliano, J.C.7
Smas, M.E.8
Winokur, D.9
Gilman, A.J.10
-
79
-
-
84877612139
-
The genomic and transcriptomic landscape of a HeLa cell line
-
Landry, J.J., Pyl, P.T., Rausch, T., Zichner, T., Tekkedil, M.M., Stutz, A.M., Jauch, A., Aiyar, R.S., Pau, G., Delhomme, N. et al. (2013) The genomic and transcriptomic landscape of a HeLa cell line. G3 (Bethesda), 3, 1213-1224.
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 1213-1224
-
-
Landry, J.J.1
Pyl, P.T.2
Rausch, T.3
Zichner, T.4
Tekkedil, M.M.5
Stutz, A.M.6
Jauch, A.7
Aiyar, R.S.8
Pau, G.9
Delhomme, N.10
-
80
-
-
21644487903
-
Three-dimensional culture of melanoma cells profoundly affects gene expression profile: A high density oligonucleotide array study
-
Ghosh, S., Spagnoli, G.C., Martin, I., Ploegert, S., Demougin, P., Heberer, M. and Reschner, A. (2005) Three-dimensional culture of melanoma cells profoundly affects gene expression profile: a high density oligonucleotide array study. J. Cell. Physiol., 204, 522-531.
-
(2005)
J. Cell. Physiol.
, vol.204
, pp. 522-531
-
-
Ghosh, S.1
Spagnoli, G.C.2
Martin, I.3
Ploegert, S.4
Demougin, P.5
Heberer, M.6
Reschner, A.7
-
81
-
-
84868111953
-
Mechanosensitive mechanisms in transcriptional regulation
-
Mammoto, A., Mammoto, T. and Ingber, D.E. (2012) Mechanosensitive mechanisms in transcriptional regulation. J. Cell. Sci., 125, 3061-3073.
-
(2012)
J. Cell. Sci.
, vol.125
, pp. 3061-3073
-
-
Mammoto, A.1
Mammoto, T.2
Ingber, D.E.3
-
82
-
-
0033010885
-
Gene expression profiles of laser-captured adjacent neuronal subtypes
-
Luo, L., Salunga, R.C., Guo, H., Bittner, A., Joy, K.C., Galindo, J.E., Xiao, H., Rogers, K.E., Wan, J.S., Jackson, M.R. et al. (1999) Gene expression profiles of laser-captured adjacent neuronal subtypes. Nat. Med., 5, 117-122.
-
(1999)
Nat. Med.
, vol.5
, pp. 117-122
-
-
Luo, L.1
Salunga, R.C.2
Guo, H.3
Bittner, A.4
Joy, K.C.5
Galindo, J.E.6
Xiao, H.7
Rogers, K.E.8
Wan, J.S.9
Jackson, M.R.10
-
83
-
-
84873355312
-
Stochastic profiling of transcriptional regulatory heterogeneities in tissues, tumors and cultured cells
-
Wang, L. and Janes, K.A. (2013) Stochastic profiling of transcriptional regulatory heterogeneities in tissues, tumors and cultured cells. Nat. Protoc., 8, 282-301.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 282-301
-
-
Wang, L.1
Janes, K.A.2
-
84
-
-
34548707114
-
Laser-capture microdissection
-
Espina, V., Wulfkuhle, J.D., Calvert, V.S., VanMeter, A., Zhou, W., Coukos, G., Geho, D.H., Petricoin, E.F. III and Liotta, L.A. (2006) Laser-capture microdissection. Nat. Protoc., 1, 586-603.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 586-603
-
-
Espina, V.1
Wulfkuhle, J.D.2
Calvert, V.S.3
Vanmeter, A.4
Zhou, W.5
Coukos, G.6
Geho, D.H.7
Petricoin III, E.F.8
Liotta, L.A.9
-
85
-
-
80052174976
-
High-throughput microfluidic single-cell RT-qPCR
-
White, A.K., VanInsberghe, M., Petriv, O.I., Hamidi, M., Sikorski, D., Marra, M.A., Piret, J., Aparicio, S. and Hansen, C.L. (2011) High-throughput microfluidic single-cell RT-qPCR. Proc. Natl. Acad. Sci. U.S.A., 108, 13999-14004.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 13999-14004
-
-
White, A.K.1
Vaninsberghe, M.2
Petriv, O.I.3
Hamidi, M.4
Sikorski, D.5
Marra, M.A.6
Piret, J.7
Aparicio, S.8
Hansen, C.L.9
-
86
-
-
84881339720
-
High-throughput microfluidic single-cell digital polymerase chain reaction
-
White, A.K., Heyries, K.A., Doolin, C., Vaninsberghe, M. and Hansen, C.L. (2013) High-throughput microfluidic single-cell digital polymerase chain reaction. Anal. Chem., 85, 7182-7190.
-
(2013)
Anal. Chem.
, vol.85
, pp. 7182-7190
-
-
White, A.K.1
Heyries, K.A.2
Doolin, C.3
Vaninsberghe, M.4
Hansen, C.L.5
-
87
-
-
84872195205
-
Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells
-
Livak, K.J., Wills, Q.F., Tipping, A.J., Datta, K., Mittal, R., Goldson, A.J., Sexton, D.W. and Holmes, C.C. (2013) Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells. Methods, 59, 71-79.
-
(2013)
Methods
, vol.59
, pp. 71-79
-
-
Livak, K.J.1
Wills, Q.F.2
Tipping, A.J.3
Datta, K.4
Mittal, R.5
Goldson, A.J.6
Sexton, D.W.7
Holmes, C.C.8
-
88
-
-
33845629055
-
Gene expression profiling of single cells on large-scale oligonucleotide arrays
-
Hartmann, C.H. and Klein, C.A. (2006) Gene expression profiling of single cells on large-scale oligonucleotide arrays. Nucleic Acids Res., 34, e143.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Hartmann, C.H.1
Klein, C.A.2
-
89
-
-
33644850222
-
Options available for profiling small samples: A review of sample amplification technology when combined with microarray profiling
-
Nygaard, V. and Hovig, E. (2006) Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling. Nucleic Acids Res., 34, 996-1014.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 996-1014
-
-
Nygaard, V.1
Hovig, E.2
-
90
-
-
34347235153
-
Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis
-
Kurimoto, K., Yabuta, Y., Ohinata, Y. and Saitou, M. (2007) Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis. Nat. Protoc., 2, 739-752.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 739-752
-
-
Kurimoto, K.1
Yabuta, Y.2
Ohinata, Y.3
Saitou, M.4
-
91
-
-
84887101406
-
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
-
Picelli, S., Bjorklund, A.K., Faridani, O.R., Sagasser, S., Winberg, G. and Sandberg, R. (2013) Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Nat. Methods, 10, 1096-1098.
-
(2013)
Nat. Methods
, vol.10
, pp. 1096-1098
-
-
Picelli, S.1
Bjorklund, A.K.2
Faridani, O.R.3
Sagasser, S.4
Winberg, G.5
Sandberg, R.6
-
92
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
-
Adey, A., Morrison, H.G., Asan,, Xun, X., Kitzman, J.O., Turner, E.H., Stackhouse, B., MacKenzie, A.P., Caruccio, N.C., Zhang, X. et al. (2010) Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol., 11, R119.
-
(2010)
Genome Biol.
, vol.11
-
-
Adey, A.1
Morrison, H.G.2
Asan Xun, X.3
Kitzman, J.O.4
Turner, E.H.5
Stackhouse, B.6
MacKenzie, A.P.7
Caruccio, N.C.8
Zhang, X.9
-
93
-
-
67349146589
-
MRNA-Seq whole-transcriptome analysis of a single cell
-
Tang, F., Barbacioru, C., Wang, Y., Nordman, E., Lee, C., Xu, N., Wang, X., Bodeau, J., Tuch, B.B., Siddiqui, A. et al. (2009) mRNA-Seq whole-transcriptome analysis of a single cell. Nat. Methods, 6, 377-382.
-
(2009)
Nat. Methods
, vol.6
, pp. 377-382
-
-
Tang, F.1
Barbacioru, C.2
Wang, Y.3
Nordman, E.4
Lee, C.5
Xu, N.6
Wang, X.7
Bodeau, J.8
Tuch, B.B.9
Siddiqui, A.10
-
94
-
-
77957689489
-
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
-
He, S., Wurtzel, O., Singh, K., Froula, J.L., Yilmaz, S., Tringe, S.G., Wang, Z., Chen, F., Lindquist, E.A., Sorek, R. et al. (2010) Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nat. Methods, 7, 807-812.
-
(2010)
Nat. Methods
, vol.7
, pp. 807-812
-
-
He, S.1
Wurtzel, O.2
Singh, K.3
Froula, J.L.4
Yilmaz, S.5
Tringe, S.G.6
Wang, Z.7
Chen, F.8
Lindquist, E.A.9
Sorek, R.10
-
95
-
-
79951551684
-
Genomewide characterization of non-polyadenylated RNAs
-
Yang, L., Duff, M.O., Graveley, B.R., Carmichael, G.G. and Chen, L.L. (2011) Genomewide characterization of non-polyadenylated RNAs. Genome Biol., 12, R16.
-
(2011)
Genome Biol.
, vol.12
-
-
Yang, L.1
Duff, M.O.2
Graveley, B.R.3
Carmichael, G.G.4
Chen, L.L.5
-
96
-
-
80051732583
-
Bacterial transcriptomics: What is beyond the RNA horiz-ome?
-
Guell, M., Yus, E., Lluch-Senar, M. and Serrano, L. (2011) Bacterial transcriptomics: what is beyond the RNA horiz-ome? Nat. Rev. Microbiol., 9, 658-669.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 658-669
-
-
Guell, M.1
Yus, E.2
Lluch-Senar, M.3
Serrano, L.4
-
97
-
-
79957938596
-
Transcript amplification from single bacterium for transcriptome analysis
-
Kang, Y., Norris, M.H., Zarzycki-Siek, J., Nierman, W.C., Donachie, S.P. and Hoang, T.T. (2011) Transcript amplification from single bacterium for transcriptome analysis. Genome Res., 21, 925-935.
-
(2011)
Genome Res.
, vol.21
, pp. 925-935
-
-
Kang, Y.1
Norris, M.H.2
Zarzycki-Siek, J.3
Nierman, W.C.4
Donachie, S.P.5
Hoang, T.T.6
-
98
-
-
0022450889
-
Influence on stability in Escherichia coli of the carboxy-terminal structure of cloned Moloney murine leukemia virus reverse transcriptase
-
Gerard, G.F., D'Alessio, J.M., Kotewicz, M.L. and Noon, M.C. (1986) Influence on stability in Escherichia coli of the carboxy-terminal structure of cloned Moloney murine leukemia virus reverse transcriptase. DNA, 5, 271-279.
-
(1986)
DNA
, vol.5
, pp. 271-279
-
-
Gerard, G.F.1
D'Alessio, J.M.2
Kotewicz, M.L.3
Noon, M.C.4
-
99
-
-
59749085863
-
Novel mutations in Moloney Murine Leukemia Virus reverse transcriptase increase thermostability through tighter binding to template-primer
-
Arezi, B. and Hogrefe, H. (2009) Novel mutations in Moloney Murine Leukemia Virus reverse transcriptase increase thermostability through tighter binding to template-primer. Nucleic Acids Res., 37, 473-481.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 473-481
-
-
Arezi, B.1
Hogrefe, H.2
-
100
-
-
4344564046
-
Comparison of reverse transcriptases in gene expression analysis
-
Stahlberg, A., Kubista, M. and Pfaffl, M. (2004) Comparison of reverse transcriptases in gene expression analysis. Clin. Chem., 50, 1678-1680.
-
(2004)
Clin. Chem.
, vol.50
, pp. 1678-1680
-
-
Stahlberg, A.1
Kubista, M.2
Pfaffl, M.3
-
101
-
-
84887412533
-
A single-molecule long-read survey of the human transcriptome
-
Sharon, D., Tilgner, H., Grubert, F. and Snyder, M. (2013) A single-molecule long-read survey of the human transcriptome. Nat. Biotechnol., 31, 1009-1014.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1009-1014
-
-
Sharon, D.1
Tilgner, H.2
Grubert, F.3
Snyder, M.4
-
102
-
-
84874370010
-
Homopolymer tail-mediated ligation PCR: A streamlined and highly efficient method for DNA cloning and library construction
-
Lazinski, D.W. and Camilli, A. (2013) Homopolymer tail-mediated ligation PCR: a streamlined and highly efficient method for DNA cloning and library construction. Biotechniques, 54, 25-34.
-
(2013)
Biotechniques
, vol.54
, pp. 25-34
-
-
Lazinski, D.W.1
Camilli, A.2
-
103
-
-
77957219499
-
PCR-based cDNA library construction: General cDNA libraries at the level of a few cells
-
Belyavsky, A., Vinogradova, T. and Rajewsky, K. (1989) PCR-based cDNA library construction: general cDNA libraries at the level of a few cells. Nucleic Acids Res., 17, 2919-2932.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 2919-2932
-
-
Belyavsky, A.1
Vinogradova, T.2
Rajewsky, K.3
-
104
-
-
33645544764
-
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis
-
Kurimoto, K., Yabuta, Y., Ohinata, Y., Ono, Y., Uno, K.D., Yamada, R.G., Ueda, H.R. and Saitou, M. (2006) An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis. Nucleic Acids Res., 34, e42.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Kurimoto, K.1
Yabuta, Y.2
Ohinata, Y.3
Ono, Y.4
Uno, K.D.5
Yamada, R.G.6
Ueda, H.R.7
Saitou, M.8
-
105
-
-
77749323185
-
RNA-Seq analysis to capture the transcriptome landscape of a single cell
-
Tang, F., Barbacioru, C., Nordman, E., Li, B., Xu, N., Bashkirov, V.I., Lao, K. and Surani, M.A. (2010) RNA-Seq analysis to capture the transcriptome landscape of a single cell. Nat. Protoc., 5, 516-535.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 516-535
-
-
Tang, F.1
Barbacioru, C.2
Nordman, E.3
Li, B.4
Xu, N.5
Bashkirov, V.I.6
Lao, K.7
Surani, M.A.8
-
106
-
-
84876085773
-
Quartz-Seq: A highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity
-
Sasagawa, Y., Nikaido, I., Hayashi, T., Danno, H., Uno, K.D., Imai, T. and Ueda, H.R. (2013) Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity. Genome Biol., 14, R31.
-
(2013)
Genome Biol.
, vol.14
-
-
Sasagawa, Y.1
Nikaido, I.2
Hayashi, T.3
Danno, H.4
Uno, K.D.5
Imai, T.6
Ueda, H.R.7
-
107
-
-
84900517167
-
Microfluidic single-cell whole-transcriptome sequencing
-
Streets, A.M., Zhang, X., Cao, C., Pang, Y., Wu, X., Xiong, L., Yang, L., Fu, Y., Zhao, L., Tang, F. et al. (2014) Microfluidic single-cell whole-transcriptome sequencing. Proc. Natl. Acad. Sci. U.S.A., 111, 7048-7053.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 7048-7053
-
-
Streets, A.M.1
Zhang, X.2
Cao, C.3
Pang, Y.4
Wu, X.5
Xiong, L.6
Yang, L.7
Fu, Y.8
Zhao, L.9
Tang, F.10
-
108
-
-
84864880991
-
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
-
Ramskold, D., Luo, S., Wang, Y.C., Li, R., Deng, Q., Faridani, O.R., Daniels, G.A., Khrebtukova, I., Loring, J.F., Laurent, L.C. et al. (2012) Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. Nat. Biotechnol., 30, 777-782.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 777-782
-
-
Ramskold, D.1
Luo, S.2
Wang, Y.C.3
Li, R.4
Deng, Q.5
Faridani, O.R.6
Daniels, G.A.7
Khrebtukova, I.8
Loring, J.F.9
Laurent, L.C.10
-
109
-
-
84891677425
-
Full-length RNA-seq from single cells using Smart-seq2
-
Picelli, S., Faridani, O.R., Bjorklund, A.K., Winberg, G., Sagasser, S. and Sandberg, R. (2014) Full-length RNA-seq from single cells using Smart-seq2. Nat. Protoc., 9, 171-181.
-
(2014)
Nat. Protoc.
, vol.9
, pp. 171-181
-
-
Picelli, S.1
Faridani, O.R.2
Bjorklund, A.K.3
Winberg, G.4
Sagasser, S.5
Sandberg, R.6
-
110
-
-
0026588147
-
Analysis of gene expression in single live neurons
-
Eberwine, J., Yeh, H., Miyashiro, K., Cao, Y., Nair, S., Finnell, R., Zettel, M. and Coleman, P. (1992) Analysis of gene expression in single live neurons. Proc. Natl. Acad. Sci. U.S.A., 89, 3010-3014.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 3010-3014
-
-
Eberwine, J.1
Yeh, H.2
Miyashiro, K.3
Cao, Y.4
Nair, S.5
Finnell, R.6
Zettel, M.7
Coleman, P.8
-
111
-
-
84872194966
-
Two methods for full-length RNA sequencing for low quantities of cells and single cells
-
Pan, X., Durrett, R.E., Zhu, H., Tanaka, Y., Li, Y., Zi, X., Marjani, S.L., Euskirchen, G., Ma, C., Lamotte, R.H. et al. (2013) Two methods for full-length RNA sequencing for low quantities of cells and single cells. Proc. Natl. Acad. Sci. U.S.A., 110, 594-599.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 594-599
-
-
Pan, X.1
Durrett, R.E.2
Zhu, H.3
Tanaka, Y.4
Li, Y.5
Zi, X.6
Marjani, S.L.7
Euskirchen, G.8
Ma, C.9
Lamotte, R.H.10
-
112
-
-
84859621573
-
Highly multiplexed and strand-specific single-cell RNA 5′ end sequencing
-
Islam, S., Kjallquist, U., Moliner, A., Zajac, P., Fan, J.B., Lonnerberg, P. and Linnarsson, S. (2012) Highly multiplexed and strand-specific single-cell RNA 5′ end sequencing. Nat. Protoc., 7, 813-828.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 813-828
-
-
Islam, S.1
Kjallquist, U.2
Moliner, A.3
Zajac, P.4
Fan, J.B.5
Lonnerberg, P.6
Linnarsson, S.7
-
113
-
-
84866953427
-
CEL-Seq: Single-cell RNA-Seq by multiplexed linear amplification
-
Hashimshony, T., Wagner, F., Sher, N. and Yanai, I. (2012) CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. Cell Rep., 2, 666-673.
-
(2012)
Cell Rep.
, vol.2
, pp. 666-673
-
-
Hashimshony, T.1
Wagner, F.2
Sher, N.3
Yanai, I.4
-
114
-
-
84893905629
-
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
-
Jaitin, D.A., Kenigsberg, E., Keren-Shaul, H., Elefant, N., Paul, F., Zaretsky, I., Mildner, A., Cohen, N., Jung, S., Tanay, A. et al. (2014) Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science, 343, 776-779.
-
(2014)
Science
, vol.343
, pp. 776-779
-
-
Jaitin, D.A.1
Kenigsberg, E.2
Keren-Shaul, H.3
Elefant, N.4
Paul, F.5
Zaretsky, I.6
Mildner, A.7
Cohen, N.8
Jung, S.9
Tanay, A.10
-
115
-
-
84901831004
-
Validation of noise models for single-cell transcriptomics
-
Grun, D., Kester, L. and van Oudenaarden, A. (2014) Validation of noise models for single-cell transcriptomics. Nat. Methods, 11, 637-640
-
(2014)
Nat. Methods
, vol.11
, pp. 637-640
-
-
Grun, D.1
Kester, L.2
Van Oudenaarden, A.3
-
116
-
-
84887101406
-
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
-
Picelli, S., Bjorklund, A.K., Faridani, O.R., Sagasser, S., Winberg, G. and Sandberg, R. (2013) Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Nat. Methods, 10, 1096-1098.
-
(2013)
Nat. Methods
, vol.10
, pp. 1096-1098
-
-
Picelli, S.1
Bjorklund, A.K.2
Faridani, O.R.3
Sagasser, S.4
Winberg, G.5
Sandberg, R.6
-
117
-
-
0035046755
-
Reverse transcriptase template switching: A SMART approach for full-length cDNA library construction
-
Zhu, Y.Y., Machleder, E.M., Chenchik, A., Li, R. and Siebert, P.D. (2001) Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction. Biotechniques, 30, 892-897.
-
(2001)
Biotechniques
, vol.30
, pp. 892-897
-
-
Zhu, Y.Y.1
Machleder, E.M.2
Chenchik, A.3
Li, R.4
Siebert, P.D.5
-
118
-
-
84895071445
-
Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue
-
Lovatt, D., Ruble, B.K., Lee, J., Dueck, H., Kim, T.K., Fisher, S., Francis, C., Spaethling, J.M., Wolf, J.A., Grady, M.S. et al. (2014) Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue. Nat. Methods, 11, 190-196.
-
(2014)
Nat. Methods
, vol.11
, pp. 190-196
-
-
Lovatt, D.1
Ruble, B.K.2
Lee, J.3
Dueck, H.4
Kim, T.K.5
Fisher, S.6
Francis, C.7
Spaethling, J.M.8
Wolf, J.A.9
Grady, M.S.10
-
119
-
-
84957565329
-
Construction of cDNA libraries * stage 2: Second-strand synthesis
-
doi:10.1101/pdb.prot3560
-
Sambrook, J. and Russell, D.W. (2006) Construction of cDNA libraries * stage 2: second-strand synthesis. CSH Protoc., doi:10.1101/pdb.prot3560.
-
(2006)
CSH Protoc.
-
-
Sambrook, J.1
Russell, D.W.2
-
120
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
Levin, J.Z., Yassour, M., Adiconis, X., Nusbaum, C., Thompson, D.A., Friedman, N., Gnirke, A. and Regev, A. (2010) Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat. Methods, 7, 709-715.
-
(2010)
Nat. Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
Yassour, M.2
Adiconis, X.3
Nusbaum, C.4
Thompson, D.A.5
Friedman, N.6
Gnirke, A.7
Regev, A.8
-
121
-
-
79959403670
-
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
-
Islam, S., Kjallquist, U., Moliner, A., Zajac, P., Fan, J.B., Lonnerberg, P. and Linnarsson, S. (2011) Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res, 21, 1160-1167.
-
(2011)
Genome Res
, vol.21
, pp. 1160-1167
-
-
Islam, S.1
Kjallquist, U.2
Moliner, A.3
Zajac, P.4
Fan, J.B.5
Lonnerberg, P.6
Linnarsson, S.7
-
122
-
-
84856484968
-
Counting absolute numbers of molecules using unique molecular identifiers
-
Kivioja, T., Vaharautio, A., Karlsson, K., Bonke, M., Enge, M., Linnarsson, S. and Taipale, J. (2011) Counting absolute numbers of molecules using unique molecular identifiers. Nat. Methods, 9, 72-74.
-
(2011)
Nat. Methods
, vol.9
, pp. 72-74
-
-
Kivioja, T.1
Vaharautio, A.2
Karlsson, K.3
Bonke, M.4
Enge, M.5
Linnarsson, S.6
Taipale, J.7
-
123
-
-
60149086205
-
MRNA localization: Gene expression in the spatial dimension
-
Martin, K.C. and Ephrussi, A. (2009) mRNA localization: gene expression in the spatial dimension. Cell, 136, 719-730.
-
(2009)
Cell
, vol.136
, pp. 719-730
-
-
Martin, K.C.1
Ephrussi, A.2
-
124
-
-
84889686392
-
RNA-sequencing from single nuclei
-
Grindberg, R.V., Yee-Greenbaum, J.L., McConnell, M.J., Novotny, M., O'Shaughnessy, A.L., Lambert, G.M., Arauzo-Bravo, M.J., Lee, J., Fishman, M., Robbins, G.E. et al. (2013) RNA-sequencing from single nuclei. Proc. Natl. Acad. Sci. U.S.A., 110, 19802-19807.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 19802-19807
-
-
Grindberg, R.V.1
Yee-Greenbaum, J.L.2
McConnell, M.J.3
Novotny, M.4
O'Shaughnessy, A.L.5
Lambert, G.M.6
Arauzo-Bravo, M.J.7
Lee, J.8
Fishman, M.9
Robbins, G.E.10
-
125
-
-
84884830403
-
Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons
-
Khaladkar, M., Buckley, P.T., Lee, M.T., Francis, C., Eghbal, M.M., Chuong, T., Suresh, S., Kuhn, B., Eberwine, J. and Kim, J. (2013) Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons. PLoS One, 8, e76194.
-
(2013)
PLoS One
, vol.8
-
-
Khaladkar, M.1
Buckley, P.T.2
Lee, M.T.3
Francis, C.4
Eghbal, M.M.5
Chuong, T.6
Suresh, S.7
Kuhn, B.8
Eberwine, J.9
Kim, J.10
-
126
-
-
84883459000
-
In situ sequencing for RNA analysis in preserved tissue and cells
-
Ke, R., Mignardi, M., Pacureanu, A., Svedlund, J., Botling, J., Wahlby, C. and Nilsson, M. (2013) In situ sequencing for RNA analysis in preserved tissue and cells. Nat. Methods, 10, 857-860.
-
(2013)
Nat. Methods
, vol.10
, pp. 857-860
-
-
Ke, R.1
Mignardi, M.2
Pacureanu, A.3
Svedlund, J.4
Botling, J.5
Wahlby, C.6
Nilsson, M.7
-
127
-
-
84897090228
-
Highly multiplexed subcellular RNA sequencing in situ
-
Lee, J.H., Daugharthy, E.R., Scheiman, J., Kalhor, R., Yang, J.L., Ferrante, T.C., Terry, R., Jeanty, S.S., Li, C., Amamoto, R. et al. (2014) Highly multiplexed subcellular RNA sequencing in situ. Science, 343, 1360-1363.
-
(2014)
Science
, vol.343
, pp. 1360-1363
-
-
Lee, J.H.1
Daugharthy, E.R.2
Scheiman, J.3
Kalhor, R.4
Yang, J.L.5
Ferrante, T.C.6
Terry, R.7
Jeanty, S.S.8
Li, C.9
Amamoto, R.10
-
128
-
-
0031822837
-
Tissue microarrays for high-throughput molecular profiling of tumor specimens
-
Kononen, J., Bubendorf, L., Kallioniemi, A., Barlund, M., Schraml, P., Leighton, S., Torhorst, J., Mihatsch, M.J., Sauter, G. and Kallioniemi, O.P. (1998) Tissue microarrays for high-throughput molecular profiling of tumor specimens. Nat. Med., 4, 844-847.
-
(1998)
Nat. Med.
, vol.4
, pp. 844-847
-
-
Kononen, J.1
Bubendorf, L.2
Kallioniemi, A.3
Barlund, M.4
Schraml, P.5
Leighton, S.6
Torhorst, J.7
Mihatsch, M.J.8
Sauter, G.9
Kallioniemi, O.P.10
-
129
-
-
84889256682
-
Functional roles of pulsing in genetic circuits
-
Levine, J.H., Lin, Y. and Elowitz, M.B. (2013) Functional roles of pulsing in genetic circuits. Science, 342, 1193-1200.
-
(2013)
Science
, vol.342
, pp. 1193-1200
-
-
Levine, J.H.1
Lin, Y.2
Elowitz, M.B.3
-
130
-
-
84880920116
-
Eukaryotic transcriptional dynamics: From single molecules to cell populations
-
Coulon, A., Chow, C.C., Singer, R.H. and Larson, D.R. (2013) Eukaryotic transcriptional dynamics: from single molecules to cell populations. Nat. Rev. Genet., 14, 572-584.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 572-584
-
-
Coulon, A.1
Chow, C.C.2
Singer, R.H.3
Larson, D.R.4
-
131
-
-
60349092402
-
Mapping complex disease traits with global gene expression
-
Cookson, W., Liang, L., Abecasis, G., Moffatt, M. and Lathrop, M. (2009) Mapping complex disease traits with global gene expression. Nat. Rev. Genet., 10, 184-194.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 184-194
-
-
Cookson, W.1
Liang, L.2
Abecasis, G.3
Moffatt, M.4
Lathrop, M.5
-
132
-
-
84882582801
-
Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments
-
Wills, Q.F., Livak, K.J., Tipping, A.J., Enver, T., Goldson, A.J., Sexton, D.W. and Holmes, C. (2013) Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments. Nat. Biotechnol., 31, 748-752.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 748-752
-
-
Wills, Q.F.1
Livak, K.J.2
Tipping, A.J.3
Enver, T.4
Goldson, A.J.5
Sexton, D.W.6
Holmes, C.7
-
133
-
-
84882617049
-
Single cell expression quantitative trait loci and complex traits
-
Petretto, E. (2013) Single cell expression quantitative trait loci and complex traits. Genome Med., 5, 72.
-
(2013)
Genome Med.
, vol.5
, pp. 72
-
-
Petretto, E.1
-
134
-
-
77956412152
-
Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis
-
Tang, F., Barbacioru, C., Bao, S., Lee, C., Nordman, E., Wang, X., Lao, K. and Surani, M.A. (2010) Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis. Cell Stem Cell, 6, 468-478.
-
(2010)
Cell Stem Cell
, vol.6
, pp. 468-478
-
-
Tang, F.1
Barbacioru, C.2
Bao, S.3
Lee, C.4
Nordman, E.5
Wang, X.6
Lao, K.7
Surani, M.A.8
-
135
-
-
84866369892
-
Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase
-
Buganim, Y., Faddah, D.A., Cheng, A.W., Itskovich, E., Markoulaki, S., Ganz, K., Klemm, S.L., van Oudenaarden, A. and Jaenisch, R. (2012) Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase. Cell, 150, 1209-1222.
-
(2012)
Cell
, vol.150
, pp. 1209-1222
-
-
Buganim, Y.1
Faddah, D.A.2
Cheng, A.W.3
Itskovich, E.4
Markoulaki, S.5
Ganz, K.6
Klemm, S.L.7
Van Oudenaarden, A.8
Jaenisch, R.9
-
136
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., Lennon, N.J., Livak, K.J., Mikkelsen, T.S. and Rinn, J.L. (2014) The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat. Biotechnol, 32, 381-386
-
(2014)
Nat. Biotechnol
, vol.32
, pp. 381-386
-
-
Trapnell, C.1
Cacchiarelli, D.2
Grimsby, J.3
Pokharel, P.4
Li, S.5
Morse, M.6
Lennon, N.J.7
Livak, K.J.8
Mikkelsen, T.S.9
Rinn, J.L.10
-
137
-
-
84900529199
-
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
-
Treutlein, B., Brownfield, D.G., Wu, A.R., Neff, N., Mantalas, G.L., Espinoza, F.H., Desai, T.J., Krasnow, M.A. and Quake, S.R. (2014) Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. Nature, 509, 371-375.
-
(2014)
Nature
, vol.509
, pp. 371-375
-
-
Treutlein, B.1
Brownfield, D.G.2
Wu, A.R.3
Neff, N.4
Mantalas, G.L.5
Espinoza, F.H.6
Desai, T.J.7
Krasnow, M.A.8
Quake, S.R.9
-
138
-
-
84868568364
-
Quantitative biology of single neurons
-
Eberwine, J., Lovatt, D., Buckley, P., Dueck, H., Francis, C., Kim, T.K., Lee, J., Lee, M., Miyashiro, K., Morris, J. et al. (2012) Quantitative biology of single neurons. J. R. Soc. Interface, 9, 3165-3183.
-
(2012)
J. R. Soc. Interface
, vol.9
, pp. 3165-3183
-
-
Eberwine, J.1
Lovatt, D.2
Buckley, P.3
Dueck, H.4
Francis, C.5
Kim, T.K.6
Lee, J.7
Lee, M.8
Miyashiro, K.9
Morris, J.10
-
139
-
-
79959567069
-
Deterministic and stochastic allele specific gene expression in single mouse blastomeres
-
Tang, F., Barbacioru, C., Nordman, E., Bao, S., Lee, C., Wang, X., Tuch, B.B., Heard, E., Lao, K. and Surani, M.A. (2011) Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One, 6, e21208.
-
(2011)
PLoS One
, vol.6
-
-
Tang, F.1
Barbacioru, C.2
Nordman, E.3
Bao, S.4
Lee, C.5
Wang, X.6
Tuch, B.B.7
Heard, E.8
Lao, K.9
Surani, M.A.10
-
140
-
-
84883743509
-
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
-
Yan, L., Yang, M., Guo, H., Yang, L., Wu, J., Li, R., Liu, P., Lian, Y., Zheng, X., Yan, J. et al. (2013) Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells. Nat. Struct. Mol. Biol., 20, 1131-1139.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 1131-1139
-
-
Yan, L.1
Yang, M.2
Guo, H.3
Yang, L.4
Wu, J.5
Li, R.6
Liu, P.7
Lian, Y.8
Zheng, X.9
Yan, J.10
-
141
-
-
84883134780
-
Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
-
Xue, Z., Huang, K., Cai, C., Cai, L., Jiang, C.Y., Feng, Y., Liu, Z., Zeng, Q., Cheng, L., Sun, Y.E. et al. (2013) Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature, 500, 593-597.
-
(2013)
Nature
, vol.500
, pp. 593-597
-
-
Xue, Z.1
Huang, K.2
Cai, C.3
Cai, L.4
Jiang, C.Y.5
Feng, Y.6
Liu, Z.7
Zeng, Q.8
Cheng, L.9
Sun, Y.E.10
-
142
-
-
79959567069
-
Deterministic and stochastic allele specific gene expression in single mouse blastomeres
-
Tang, F., Barbacioru, C., Nordman, E., Bao, S., Lee, C., Wang, X., Tuch, B.B., Heard, E., Lao, K. and Surani, M.A. (2011) Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One, 6, e21208.
-
(2011)
PLoS One
, vol.6
-
-
Tang, F.1
Barbacioru, C.2
Nordman, E.3
Bao, S.4
Lee, C.5
Wang, X.6
Tuch, B.B.7
Heard, E.8
Lao, K.9
Surani, M.A.10
-
143
-
-
84891346362
-
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages
-
Ohnishi, Y., Huber, W., Tsumura, A., Kang, M., Xenopoulos, P., Kurimoto, K., Oles, A.K., Arauzo-Bravo, M.J., Saitou, M., Hadjantonakis, A.K. et al. (2014) Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages. Nat. Cell Biol., 16, 27-37.
-
(2014)
Nat. Cell Biol.
, vol.16
, pp. 27-37
-
-
Ohnishi, Y.1
Huber, W.2
Tsumura, A.3
Kang, M.4
Xenopoulos, P.5
Kurimoto, K.6
Oles, A.K.7
Arauzo-Bravo, M.J.8
Saitou, M.9
Hadjantonakis, A.K.10
-
144
-
-
0017618537
-
Post-embryonic cell lineages of the nematode, Caenorhabditis elegans
-
Sulston, J.E. and Horvitz, H.R. (1977) Post-embryonic cell lineages of the nematode, Caenorhabditis elegans. Dev. Biol., 56, 110-156.
-
(1977)
Dev. Biol.
, vol.56
, pp. 110-156
-
-
Sulston, J.E.1
Horvitz, H.R.2
-
145
-
-
84886379960
-
Going with the flow: From circulating tumor cells to DNA
-
Bidard, F.C., Weigelt, B. and Reis-Filho, J.S. (2013) Going with the flow: from circulating tumor cells to DNA. Sci. Transl. Med., 5, 207ps14.
-
(2013)
Sci. Transl. Med.
, vol.5
-
-
Bidard, F.C.1
Weigelt, B.2
Reis-Filho, J.S.3
-
146
-
-
18344382135
-
Combined transcriptome and genome analysis of single micrometastatic cells
-
Klein, C.A., Seidl, S., Petat-Dutter, K., Offner, S., Geigl, J.B., Schmidt-Kittler, O., Wendler, N., Passlick, B., Huber, R.M., Schlimok, G. et al. (2002) Combined transcriptome and genome analysis of single micrometastatic cells. Nat. Biotechnol., 20, 387-392.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 387-392
-
-
Klein, C.A.1
Seidl, S.2
Petat-Dutter, K.3
Offner, S.4
Geigl, J.B.5
Schmidt-Kittler, O.6
Wendler, N.7
Passlick, B.8
Huber, R.M.9
Schlimok, G.10
-
147
-
-
84872714824
-
CD147-dependent heterogeneity in malignant and chemoresistant properties of cancer cells
-
Dai, L., Guinea, M.C., Slomiany, M.G., Bratoeva, M., Grass, G.D., Tolliver, L.B., Maria, B.L. and Toole, B.P. (2013) CD147-dependent heterogeneity in malignant and chemoresistant properties of cancer cells. Am. J. Pathol., 182, 577-585.
-
(2013)
Am. J. Pathol.
, vol.182
, pp. 577-585
-
-
Dai, L.1
Guinea, M.C.2
Slomiany, M.G.3
Bratoeva, M.4
Grass, G.D.5
Tolliver, L.B.6
Maria, B.L.7
Toole, B.P.8
-
148
-
-
84890107723
-
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
-
Schwartz, S., Agarwala, S.D., Mumbach, M.R., Jovanovic, M., Mertins, P., Shishkin, A., Tabach, Y., Mikkelsen, T.S., Satija, R., Ruvkun, G. et al. (2013) High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis. Cell, 155, 1409-1421.
-
(2013)
Cell
, vol.155
, pp. 1409-1421
-
-
Schwartz, S.1
Agarwala, S.D.2
Mumbach, M.R.3
Jovanovic, M.4
Mertins, P.5
Shishkin, A.6
Tabach, Y.7
Mikkelsen, T.S.8
Satija, R.9
Ruvkun, G.10
-
149
-
-
84887875528
-
RNA-methylation-dependent RNA processing controls the speed of the circadian clock
-
Fustin, J.M., Doi, M., Yamaguchi, Y., Hida, H., Nishimura, S., Yoshida, M., Isagawa, T., Morioka, M.S., Kakeya, H., Manabe, I. et al. (2013) RNA-methylation-dependent RNA processing controls the speed of the circadian clock. Cell, 155, 793-806.
-
(2013)
Cell
, vol.155
, pp. 793-806
-
-
Fustin, J.M.1
Doi, M.2
Yamaguchi, Y.3
Hida, H.4
Nishimura, S.5
Yoshida, M.6
Isagawa, T.7
Morioka, M.S.8
Kakeya, H.9
Manabe, I.10
-
150
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
Nishikura, K. (2010) Functions and regulation of RNA editing by ADAR deaminases. Annu. Rev. Biochem., 79, 321-349.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
151
-
-
84883216800
-
Accurate identification and analysis of human mRNA isoforms using deep long read sequencing
-
Tilgner, H., Raha, D., Habegger, L., Mohiuddin, M., Gerstein, M. and Snyder, M. (2013) Accurate identification and analysis of human mRNA isoforms using deep long read sequencing. G3 (Bethesda), 3, 387-397.
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 387-397
-
-
Tilgner, H.1
Raha, D.2
Habegger, L.3
Mohiuddin, M.4
Gerstein, M.5
Snyder, M.6
-
152
-
-
69549112743
-
Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
-
Armour, C.D., Castle, J.C., Chen, R., Babak, T., Loerch, P., Jackson, S., Shah, J.K., Dey, J., Rohl, C.A., Johnson, J.M. et al. (2009) Digital transcriptome profiling using selective hexamer priming for cDNA synthesis. Nat. Methods, 6, 647-649.
-
(2009)
Nat. Methods
, vol.6
, pp. 647-649
-
-
Armour, C.D.1
Castle, J.C.2
Chen, R.3
Babak, T.4
Loerch, P.5
Jackson, S.6
Shah, J.K.7
Dey, J.8
Rohl, C.A.9
Johnson, J.M.10
-
153
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., Guernec, G., Martin, D., Merkel, A., Knowles, D.G. et al. (2012) The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res., 22, 1775-1789.
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
-
154
-
-
33947315326
-
220-plex microRNA expression profile of a single cell
-
Tang, F., Hajkova, P., Barton, S.C., O'Carroll, D., Lee, C., Lao, K. and Surani, M.A. (2006) 220-plex microRNA expression profile of a single cell. Nat. Protoc., 1, 1154-1159.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1154-1159
-
-
Tang, F.1
Hajkova, P.2
Barton, S.C.3
O'Carroll, D.4
Lee, C.5
Lao, K.6
Surani, M.A.7
-
155
-
-
32644439132
-
MicroRNA expression profiling of single whole embryonic stem cells
-
Tang, F., Hajkova, P., Barton, S.C., Lao, K. and Surani, M.A. (2006) MicroRNA expression profiling of single whole embryonic stem cells. Nucleic Acids Res., 34, e9.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Tang, F.1
Hajkova, P.2
Barton, S.C.3
Lao, K.4
Surani, M.A.5
-
156
-
-
84891818318
-
MiRBase: Annotating high confidence microRNAs using deep sequencing data
-
Kozomara, A. and Griffiths-Jones, S. (2014) miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res., 42, D68-D73.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
157
-
-
84860237424
-
Clonally dominant cardiomyocytes direct heart morphogenesis
-
Gupta, V. and Poss, K.D. (2012) Clonally dominant cardiomyocytes direct heart morphogenesis. Nature, 484, 479-484.
-
(2012)
Nature
, vol.484
, pp. 479-484
-
-
Gupta, V.1
Poss, K.D.2
-
158
-
-
84876122754
-
The future is now: Single-cell genomics of bacteria and archaea
-
Blainey, P.C. (2013) The future is now: single-cell genomics of bacteria and archaea. FEMS Microbiol. Rev., 37, 407-427.
-
(2013)
FEMS Microbiol. Rev.
, vol.37
, pp. 407-427
-
-
Blainey, P.C.1
-
159
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N.N., Anderson, I.J., Cheng, J.F., Darling, A., Malfatti, S., Swan, B.K., Gies, E.A. et al. (2013) Insights into the phylogeny and coding potential of microbial dark matter. Nature, 499, 431-437.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.F.6
Darling, A.7
Malfatti, S.8
Swan, B.K.9
Gies, E.A.10
-
160
-
-
66149130975
-
Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column
-
Shi, Y., Tyson, G.W. and DeLong, E.F. (2009) Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature, 459, 266-269.
-
(2009)
Nature
, vol.459
, pp. 266-269
-
-
Shi, Y.1
Tyson, G.W.2
Delong, E.F.3
-
161
-
-
53649108801
-
The potential and challenges of nanopore sequencing
-
Branton, D., Deamer, D.W., Marziali, A., Bayley, H., Benner, S.A., Butler, T., Di Ventra, M., Garaj, S., Hibbs, A., Huang, X. et al. (2008) The potential and challenges of nanopore sequencing. Nat. Biotechnol., 26, 1146-1153.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1146-1153
-
-
Branton, D.1
Deamer, D.W.2
Marziali, A.3
Bayley, H.4
Benner, S.A.5
Butler, T.6
Di Ventra, M.7
Garaj, S.8
Hibbs, A.9
Huang, X.10
-
162
-
-
84859633774
-
DNA sequencing with nanopores
-
Schneider, G.F. and Dekker, C. (2012) DNA sequencing with nanopores. Nat. Biotechnol., 30, 326-328.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 326-328
-
-
Schneider, G.F.1
Dekker, C.2
-
163
-
-
84875153533
-
Unfoldase-mediated protein translocation through an alpha-hemolysin nanopore
-
Nivala, J., Marks, D.B. and Akeson, M. (2013) Unfoldase-mediated protein translocation through an alpha-hemolysin nanopore. Nat. Biotechnol., 31, 247-250.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 247-250
-
-
Nivala, J.1
Marks, D.B.2
Akeson, M.3
-
164
-
-
84859643160
-
Oxford Nanopore announcement sets sequencing sector abuzz
-
Eisenstein, M. (2012) Oxford Nanopore announcement sets sequencing sector abuzz. Nat. Biotechnol., 30, 295-296.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 295-296
-
-
Eisenstein, M.1
-
165
-
-
84869155578
-
Individual RNA base recognition in immobilized oligonucleotides using a protein nanopore
-
Ayub, M. and Bayley, H. (2012) Individual RNA base recognition in immobilized oligonucleotides using a protein nanopore. Nano Lett., 12, 5637-5643.
-
(2012)
Nano Lett.
, vol.12
, pp. 5637-5643
-
-
Ayub, M.1
Bayley, H.2
-
166
-
-
84879077504
-
Translocating kilobase RNA through the Staphylococcal alpha-hemolysin nanopore
-
Cracknell, J.A., Japrung, D. and Bayley, H. (2013) Translocating kilobase RNA through the Staphylococcal alpha-hemolysin nanopore. Nano Lett., 13, 2500-2505.
-
(2013)
Nano Lett.
, vol.13
, pp. 2500-2505
-
-
Cracknell, J.A.1
Japrung, D.2
Bayley, H.3
-
167
-
-
84890387605
-
Nanopore-based identification of individual nucleotides for direct RNA sequencing
-
Ayub, M., Hardwick, S.W., Luisi, B.F. and Bayley, H. (2013) Nanopore-based identification of individual nucleotides for direct RNA sequencing. Nano Lett., 13, 6144-6150.
-
(2013)
Nano Lett.
, vol.13
, pp. 6144-6150
-
-
Ayub, M.1
Hardwick, S.W.2
Luisi, B.F.3
Bayley, H.4
-
168
-
-
79952321198
-
An RNA degradosome assembly in Caulobacter crescentus
-
Hardwick, S.W., Chan, V.S., Broadhurst, R.W. and Luisi, B.F. (2011) An RNA degradosome assembly in Caulobacter crescentus. Nucleic Acids Res., 39, 1449-1459.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1449-1459
-
-
Hardwick, S.W.1
Chan, V.S.2
Broadhurst, R.W.3
Luisi, B.F.4
-
169
-
-
84876578637
-
A stimuli-responsive nanopore based on a photoresponsive host-guest system
-
Ying, Y.-L., Zhang, J., Meng, F.-N., Cao, C., Yao, X., Willner, I., Tian, H. and Long, Y.-T. (2013) A Stimuli-Responsive Nanopore Based on a Photoresponsive Host-Guest System. Scientific Reports 3, Article number:1662.
-
(2013)
Scientific Reports
, vol.3
, pp. 1662
-
-
Ying, Y.-L.1
Zhang, J.2
Meng, F.-N.3
Cao, C.4
Yao, X.5
Willner, I.6
Tian, H.7
Long, Y.-T.8
-
170
-
-
84865155546
-
Dual RNA-seq of pathogen and host
-
Westermann, A.J.1, Gorski, S.A. and Vogel, J. (2012) Dual RNA-seq of pathogen and host. Nat. Rev. Microbiol., 10, 618-630.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 618-630
-
-
Westermann, A.J.I.1
Gorski, S.A.2
Vogel, J.3
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