메뉴 건너뛰기




Volumn 14, Issue 4, 2013, Pages

Quartz-Seq: A highly reproducible and sensitive single-cell RNA sequencing method, reveals nongenetic gene-expression heterogeneity

Author keywords

Bioinformatics; Cell biology; Cellular heterogeneity; RNA seq; Sequencing; Single cell; Transcriptome

Indexed keywords

ANIMAL CELL; ARTICLE; CELL CYCLE; CELL CYCLE PHASE; CELL HETEROGENEITY; CONTROLLED STUDY; GENE EXPRESSION; NONHUMAN; POLYMERASE CHAIN REACTION; POLYMERASE CHAIN REACTION SYSTEM; QUANTITATIVE ANALYSIS; REPRODUCIBILITY; RNA SEQUENCE; SENSITIVITY AND SPECIFICITY; SINGLE CELL ANALYSIS; ANIMAL; ANTIBODY SPECIFICITY; CELL LINE; GENETIC TRANSCRIPTION; MOUSE; PROCEDURES; SEQUENCE ANALYSIS;

EID: 84876085773     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2013-14-4-r31     Document Type: Article
Times cited : (346)

References (30)
  • 1
    • 42149192008 scopus 로고    scopus 로고
    • Identification and characterization of subpopulations in undifferentiated ES cell culture
    • Toyooka Y, Shimosato D, Murakami K, Takahashi K, Niwa H: Identification and characterization of subpopulations in undifferentiated ES cell culture. Development 2008, 135:909-918.
    • (2008) Development , vol.135 , pp. 909-918
    • Toyooka, Y.1    Shimosato, D.2    Murakami, K.3    Takahashi, K.4    Niwa, H.5
  • 2
    • 44349162752 scopus 로고    scopus 로고
    • Transcriptomewide noise controls lineage choice in mammalian progenitor cells
    • Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S: Transcriptomewide noise controls lineage choice in mammalian progenitor cells. Nature 2008, 453:544-547.
    • (2008) Nature , vol.453 , pp. 544-547
    • Chang, H.H.1    Hemberg, M.2    Barahona, M.3    Ingber, D.E.4    Huang, S.5
  • 4
    • 84857395611 scopus 로고    scopus 로고
    • Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment
    • Bumgarner SL, Neuert G, Voight BF, Symbor-Nagrabska A, Grisafi P, van Oudenaarden A, Fink GR: Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment. Mol Cell 2012, 45:470-482.
    • (2012) Mol Cell , vol.45 , pp. 470-482
    • Bumgarner, S.L.1    Neuert, G.2    Voight, B.F.3    Symbor-Nagrabska, A.4    Grisafi, P.5    van Oudenaarden, A.6    Fink, G.R.7
  • 5
    • 56749102636 scopus 로고    scopus 로고
    • Regulatory activity revealed by dynamic correlations in gene expression noise
    • Dunlop MJ, Cox RS, Levine JH, Murray RM, Elowitz MB: Regulatory activity revealed by dynamic correlations in gene expression noise. Nat Genet 2008, 40:1493-1498.
    • (2008) Nat Genet , vol.40 , pp. 1493-1498
    • Dunlop, M.J.1    Cox, R.S.2    Levine, J.H.3    Murray, R.M.4    Elowitz, M.B.5
  • 6
    • 77956520011 scopus 로고    scopus 로고
    • Functional roles for noise in genetic circuits
    • Eldar A, Elowitz MB: Functional roles for noise in genetic circuits. Nature 2010, 467:167-173.
    • (2010) Nature , vol.467 , pp. 167-173
    • Eldar, A.1    Elowitz, M.B.2
  • 7
    • 77955830290 scopus 로고    scopus 로고
    • Biological role of noise encoded in a genetic network motif
    • Kittisopikul M, Suel GM: Biological role of noise encoded in a genetic network motif. Proc Natl Acad Sci USA 2010, 107:13300-13305.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 13300-13305
    • Kittisopikul, M.1    Suel, G.M.2
  • 8
    • 84859641038 scopus 로고    scopus 로고
    • Using gene expression noise to understand gene regulation
    • Munsky B, Neuert G, van Oudenaarden A: Using gene expression noise to understand gene regulation. Science 2012, 336:183-187.
    • (2012) Science , vol.336 , pp. 183-187
    • Munsky, B.1    Neuert, G.2    van Oudenaarden, A.3
  • 10
    • 77956412152 scopus 로고    scopus 로고
    • Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis
    • Tang F, Barbacioru C, Bao S, Lee C, Nordman E, Wang X, Lao K, Surani MA: Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis. Cell Stem Cell 2010, 6:468-478.
    • (2010) Cell Stem Cell , vol.6 , pp. 468-478
    • Tang, F.1    Barbacioru, C.2    Bao, S.3    Lee, C.4    Nordman, E.5    Wang, X.6    Lao, K.7    Surani, M.A.8
  • 17
    • 84866953427 scopus 로고    scopus 로고
    • CEL-Seq: Single-cell RNA-SEQ BY MULTIPLEXED LINEAR AMPLIFICATion
    • Hashimshony T, Wagner F, Sher N, Yanai I: CEL-Seq: Single-cell RNA-SEQ BY MULTIPLEXED LINEAR AMPLIFICATion. Cell Rep 2012, 2:666-673.
    • (2012) Cell Rep , vol.2 , pp. 666-673
    • Hashimshony, T.1    Wagner, F.2    Sher, N.3    Yanai, I.4
  • 18
    • 34347235153 scopus 로고    scopus 로고
    • Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis
    • Kurimoto K, Yabuta Y, Ohinata Y, Saitou M: Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis. Nat Protoc 2007, 2:739-752.
    • (2007) Nat Protoc , vol.2 , pp. 739-752
    • Kurimoto, K.1    Yabuta, Y.2    Ohinata, Y.3    Saitou, M.4
  • 21
    • 34547618799 scopus 로고    scopus 로고
    • Extra-embryonic endoderm cells derived from ES cells induced by GATA factors acquire the character of XEN cells
    • Shimosato D, Shiki M, Niwa H: Extra-embryonic endoderm cells derived from ES cells induced by GATA factors acquire the character of XEN cells. BMC Dev Biol 2007, 7:80.
    • (2007) BMC Dev Biol , vol.7 , pp. 80
    • Shimosato, D.1    Shiki, M.2    Niwa, H.3
  • 22
    • 74549115234 scopus 로고    scopus 로고
    • Single-cell gene profiling of planarian stem cells using fluorescent activated cell sorting and its "index sorting" function for stem cell research
    • Hayashi T, Shibata N, Okumura R, Kudome T, Nishimura O, Tarui H, Agata K: Single-cell gene profiling of planarian stem cells using fluorescent activated cell sorting and its "index sorting" function for stem cell research. Dev Growth Differ 2010, 52:131-144.
    • (2010) Dev Growth Differ , vol.52 , pp. 131-144
    • Hayashi, T.1    Shibata, N.2    Okumura, R.3    Kudome, T.4    Nishimura, O.5    Tarui, H.6    Agata, K.7
  • 27
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL: TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 29
    • 21644440363 scopus 로고    scopus 로고
    • Approximately unbiased tests of regions using multistepmultiscale bootstrap resampling
    • Shimodaira H: Approximately unbiased tests of regions using multistepmultiscale bootstrap resampling. Ann Stat 2004, 32:2616-2641.
    • (2004) Ann Stat , vol.32 , pp. 2616-2641
    • Shimodaira, H.1
  • 30
    • 68949161935 scopus 로고    scopus 로고
    • Entropy inference and the James-Stein estimator, with application to nonlinear gene association networks
    • Hausser J, Strimmer K: Entropy inference and the James-Stein estimator, with application to nonlinear gene association networks. J Mach Learn Res 2009, 10:1469-1484.
    • (2009) J Mach Learn Res , vol.10 , pp. 1469-1484
    • Hausser J.Strimmer, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.