-
1
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini, Y., and Y. Hochberg, 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Royal Stat. Soc. B. 57: 289-300.
-
(1995)
J. Royal Stat. Soc. B.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
2
-
-
78049416081
-
Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged
-
David, C. J., and J. L. Manley, 2010 Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged. Genes Dev. 24: 2343-2364.
-
(2010)
Genes Dev.
, vol.24
, pp. 2343-2364
-
-
David, C.J.1
Manley, J.L.2
-
3
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
-
Derrien, T., R. Johnson, G. Bussotti, A. Tanzer, S. Djebali et al., 2012 The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 22: 1775-1789.
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
-
4
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali, S., C. A. Davis, A. Merkel, A. Dobin, T. Lassmann et al., 2012 Landscape of transcription in human cells. Nature 489: 101-108.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
-
5
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid, J., A. Fehr, J. Gray, K. Luong, J. Lyle et al., 2009 Real-time DNA sequencing from single polymerase molecules. Science 323: 133-138.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
-
6
-
-
79953043801
-
The developmental transcriptome of Drosophila melanogaster
-
Graveley, B. R., A. N. Brooks, J. W. Carlson, M. O. Duff, J. M. Landolin et al., 2011 The developmental transcriptome of Drosophila melanogaster. Nature 471: 473-479.
-
(2011)
Nature
, vol.471
, pp. 473-479
-
-
Graveley, B.R.1
Brooks, A.N.2
Carlson, J.W.3
Duff, M.O.4
Landolin, J.M.5
-
7
-
-
33748645500
-
GENCODE: producing a reference annotation for ENCODE
-
(Suppl.1)
-
Harrow, J., F. Denoeud, A. Frankish, A. Reymond, C. K. Chen et al., 2006 GENCODE: producing a reference annotation for ENCODE. Genome Biol. 7(Suppl. 1): S41-S49.
-
(2006)
Genome Biol.
, vol.7
-
-
Harrow, J.1
Denoeud, F.2
Frankish, A.3
Reymond, A.4
Chen, C.K.5
-
8
-
-
84865760395
-
GENCODE: the reference human genome annotation for The ENCODE Project
-
Harrow, J., A. Frankish, J. M. Gonzalez, E. Tapanari, M. Diekhans et al., 2012 GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res. 22: 1760-1774.
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
-
9
-
-
0347623371
-
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
-
Johnson, J. M., J. Castle, P. Garrett-Engele, Z. Kan, P. M. Loerch et al., 2003 Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 302: 2141-2144.
-
(2003)
Science
, vol.302
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
-
10
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W. J., C. W. Sugnet, T. S. Furey, K. M. Roskin, T. H. Pringle et al., 2002 The human genome browser at UCSC. Genome Res. 12: 996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
11
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E. S., L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody et al., 2001 Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
12
-
-
27244441641
-
The importance of being divisible by three in alternative splicing
-
Magen, A., and G. Ast, 2005 The importance of being divisible by three in alternative splicing. Nucleic Acids Res. 33: 5574-5582.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5574-5582
-
-
Magen, A.1
Ast, G.2
-
13
-
-
77950458649
-
Transcriptome genetics using second generation sequencing in a Caucasian population
-
Montgomery, S. B., M. Sammeth, M. Gutierrez-Arcelus, R. P. Lach, C. Ingle et al., 2010 Transcriptome genetics using second generation sequencing in a Caucasian population. Nature 464: 773-777.
-
(2010)
Nature
, vol.464
, pp. 773-777
-
-
Montgomery, S.B.1
Sammeth, M.2
Gutierrez-Arcelus, M.3
Lach, R.P.4
Ingle, C.5
-
14
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNASeq
-
Mortazavi, A., B. A. Williams, K. McCue, L. Schaeffer, and B. Wold, 2008 Mapping and quantifying mammalian transcriptomes by RNASeq. Nat. Methods 5: 621-628.
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
15
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Nagalakshmi, U., Z. Wang, K. Waern, C. Shou, D. Raha et al., 2008 The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320: 1344-1349.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
-
16
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan, Q., O. Shai, L. J. Lee, B. J. Frey, and B. J. Blencowe, 2008 Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet. 40: 1413-1415.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
18
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
-
Pruitt, K. D., T. Tatusova, G. R. Brown, and D. R. Maglott, 2012 NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 40: D130-D135.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
19
-
-
79952709611
-
Improving RNA-Seq expression estimates by correcting for fragment bias
-
Roberts, A., C. Trapnell, J. Donaghey, J. L. Rinn, and L. Pachter, 2011 Improving RNA-Seq expression estimates by correcting for fragment bias. Genome Biol. 12: R22.
-
(2011)
Genome Biol.
, vol.12
-
-
Roberts, A.1
Trapnell, C.2
Donaghey, J.3
Rinn, J.L.4
Pachter, L.5
-
20
-
-
0035895505
-
The sequence of the human genome
-
Venter, J. C., M. D. Adams, E. W. Myers, P. W. Li, R. J. Mural et al., 2001 The sequence of the human genome. Science 291: 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
-
21
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang, E. T., R. Sandberg, S. Luo, I. Khrebtukova, L. Zhang et al., 2008 Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
-
22
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang, Z., M. Gerstein, and M. Snyder, 2009 RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10: 57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
23
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
Wu, T. D., and C. K. Watanabe, 2005 GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 21: 1859-1875.
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
24
-
-
77950396799
-
Dynamic transcriptomes during neural differentiation of human embryonic stemcells revealed by short, long, and paired-end sequencing
-
USA
-
Wu, J. Q., L. Habegger, P. Noisa, A. Szekely, C. Qiu et al., 2010 Dynamic transcriptomes during neural differentiation of human embryonic stemcells revealed by short, long, and paired-end sequencing. Proc. Natl. Acad. Sci. USA 107: 5254-5259.
-
(2010)
Proc. Natl. Acad. Sci.
, vol.107
, pp. 5254-5259
-
-
Wu, J.Q.1
Habegger, L.2
Noisa, P.3
Szekely, A.4
Qiu, C.5
-
25
-
-
28344452441
-
Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse
-
Zheng, C. L., X. D. Fu, and M. Gribskov, 2005 Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse. RNA 11: 1777-1787.
-
(2005)
RNA
, vol.11
, pp. 1777-1787
-
-
Zheng, C.L.1
Fu, X.D.2
Gribskov, M.3
|