-
1
-
-
60049087090
-
Divergence without difference: phylogenetics and taxonomy of Chlamydia resolved.
-
10.1111/j.1574-695X.2008.00516.x, 19281563
-
Stephens RS, Myers G, Eppinger M, Bavoil PM. Divergence without difference: phylogenetics and taxonomy of Chlamydia resolved. FEMS Immunol Med Microbiol 2009, 55:115-119. 10.1111/j.1574-695X.2008.00516.x, 19281563.
-
(2009)
FEMS Immunol Med Microbiol
, vol.55
, pp. 115-119
-
-
Stephens, R.S.1
Myers, G.2
Eppinger, M.3
Bavoil, P.M.4
-
2
-
-
16844383353
-
Chlamydia pneumoniae and atherosclerosis.
-
10.1086/428739, 15791512
-
Grayston JT. Chlamydia pneumoniae and atherosclerosis. Clin Infect Dis 2005, 40:1131-1132. 10.1086/428739, 15791512.
-
(2005)
Clin Infect Dis
, vol.40
, pp. 1131-1132
-
-
Grayston, J.T.1
-
3
-
-
78449282143
-
Chlamydia pneumoniae infection and Alzheimer's disease: a connection to remember?.
-
10.1007/s00430-010-0162-1, 20445987
-
Shima K, Kuhlenbaumer G, Rupp J. Chlamydia pneumoniae infection and Alzheimer's disease: a connection to remember?. Med Microbiol Immunol 2010, 199:283-289. 10.1007/s00430-010-0162-1, 20445987.
-
(2010)
Med Microbiol Immunol
, vol.199
, pp. 283-289
-
-
Shima, K.1
Kuhlenbaumer, G.2
Rupp, J.3
-
4
-
-
0025274719
-
A new respiratory tract pathogen Chlamydia pneumoniae strain TWAR.
-
10.1093/infdis/161.4.618, 2181028
-
Grayston JT, Campbell LA, Kuo CC, Mordhorst CH, Saikku P, Thom DH, Wang SP. A new respiratory tract pathogen Chlamydia pneumoniae strain TWAR. J Infect Dis 1990, 161:618-625. 10.1093/infdis/161.4.618, 2181028.
-
(1990)
J Infect Dis
, vol.161
, pp. 618-625
-
-
Grayston, J.T.1
Campbell, L.A.2
Kuo, C.C.3
Mordhorst, C.H.4
Saikku, P.5
Thom, D.H.6
Wang, S.P.7
-
5
-
-
0034526123
-
Chlamydia pneumoniae and the lung.
-
10.1183/09031936.00.16510010, 11153568
-
Hammerschlag MR. Chlamydia pneumoniae and the lung. Eur Respir J 2000, 16:1001-1007. 10.1183/09031936.00.16510010, 11153568.
-
(2000)
Eur Respir J
, vol.16
, pp. 1001-1007
-
-
Hammerschlag, M.R.1
-
6
-
-
0034097981
-
Background and current knowledge of Chlamydia pneumoniae and atherosclerosis.
-
Grayston JT. Background and current knowledge of Chlamydia pneumoniae and atherosclerosis. J Infect Dis 2000, 181(Suppl 3):S402-410.
-
(2000)
J Infect Dis
, vol.181
, Issue.SUPPL. 3
-
-
Grayston, J.T.1
-
7
-
-
0019996424
-
The relation of basic biology to pathogenic potential in the genus Chlamydia.
-
Moulder JW. The relation of basic biology to pathogenic potential in the genus Chlamydia. Infection 1982, 10(Suppl 1):S10-18.
-
(1982)
Infection
, vol.10
, Issue.SUPPL. 1
-
-
Moulder, J.W.1
-
8
-
-
0017857176
-
Parasite-specified phagocytosis of Chlamydia psittaci and Chlamydia trachomatis by L and HeLa cells.
-
414125, 344217
-
Byrne GI, Moulder JW. Parasite-specified phagocytosis of Chlamydia psittaci and Chlamydia trachomatis by L and HeLa cells. Infect Immun 1978, 19:598-606. 414125, 344217.
-
(1978)
Infect Immun
, vol.19
, pp. 598-606
-
-
Byrne, G.I.1
Moulder, J.W.2
-
9
-
-
77953298724
-
Chlamydia pneumoniae infection and risk for lung cancer.
-
10.1158/1055-9965.EPI-09-1261, 20501758
-
Chaturvedi AK, Gaydos CA, Agreda P, Holden JP, Chatterjee N, Goedert JJ, Caporaso NE, Engels EA. Chlamydia pneumoniae infection and risk for lung cancer. Cancer Epidemiol Biomarkers Prev 2010, 19:1498-1505. 10.1158/1055-9965.EPI-09-1261, 20501758.
-
(2010)
Cancer Epidemiol Biomarkers Prev
, vol.19
, pp. 1498-1505
-
-
Chaturvedi, A.K.1
Gaydos, C.A.2
Agreda, P.3
Holden, J.P.4
Chatterjee, N.5
Goedert, J.J.6
Caporaso, N.E.7
Engels, E.A.8
-
10
-
-
0032953228
-
Comparative genomes of Chlamydia pneumoniae and C. trachomatis.
-
10.1038/7716, 10192388
-
Kalman S, Mitchell W, Marathe R, Lammel C, Fan J, Hyman RW, Olinger L, Grimwood J, Davis RW, Stephens RS. Comparative genomes of Chlamydia pneumoniae and C. trachomatis. Nat Genet 1999, 21:385-389. 10.1038/7716, 10192388.
-
(1999)
Nat Genet
, vol.21
, pp. 385-389
-
-
Kalman, S.1
Mitchell, W.2
Marathe, R.3
Lammel, C.4
Fan, J.5
Hyman, R.W.6
Olinger, L.7
Grimwood, J.8
Davis, R.W.9
Stephens, R.S.10
-
11
-
-
34347335735
-
Gene expression profiles of Chlamydophila pneumoniae during the developmental cycle and iron depletion-mediated persistence.
-
10.1371/journal.ppat.0030083, 1894823, 17590080
-
Maurer AP, Mehlitz A, Mollenkopf HJ, Meyer TF. Gene expression profiles of Chlamydophila pneumoniae during the developmental cycle and iron depletion-mediated persistence. PLoS Pathog 2007, 3:e83. 10.1371/journal.ppat.0030083, 1894823, 17590080.
-
(2007)
PLoS Pathog
, vol.3
-
-
Maurer, A.P.1
Mehlitz, A.2
Mollenkopf, H.J.3
Meyer, T.F.4
-
12
-
-
0038607972
-
A developmentally regulated two-component signal transduction system in Chlamydia.
-
10.1074/jbc.M212170200, 12600998
-
Koo IC, Stephens RS. A developmentally regulated two-component signal transduction system in Chlamydia. J Biol Chem 2003, 278:17314-17319. 10.1074/jbc.M212170200, 12600998.
-
(2003)
J Biol Chem
, vol.278
, pp. 17314-17319
-
-
Koo, I.C.1
Stephens, R.S.2
-
13
-
-
0034682029
-
Expression of the transcripts of the sigma factors and putative sigma factor regulators of Chlamydia trachomatis L2.
-
10.1016/S0378-1119(00)00094-9, 10773461
-
Douglas AL, Hatch TP. Expression of the transcripts of the sigma factors and putative sigma factor regulators of Chlamydia trachomatis L2. Gene 2000, 247:209-214. 10.1016/S0378-1119(00)00094-9, 10773461.
-
(2000)
Gene
, vol.247
, pp. 209-214
-
-
Douglas, A.L.1
Hatch, T.P.2
-
14
-
-
0032876437
-
Development of a quantitative gene expression assay for Chlamydia trachomatis identified temporal expression of sigma factors.
-
10.1016/S0014-5793(99)01182-5, 10570939
-
Mathews SA, Volp KM, Timms P. Development of a quantitative gene expression assay for Chlamydia trachomatis identified temporal expression of sigma factors. FEBS Lett 1999, 458:354-358. 10.1016/S0014-5793(99)01182-5, 10570939.
-
(1999)
FEBS Lett
, vol.458
, pp. 354-358
-
-
Mathews, S.A.1
Volp, K.M.2
Timms, P.3
-
15
-
-
0027480442
-
In vitro transcription in Chlamydia psittaci and Chlamydia trachomatis.
-
10.1111/j.1365-2958.1993.tb01185.x, 8483421
-
Mathews SA, Douglas A, Sriprakash KS, Hatch TP. In vitro transcription in Chlamydia psittaci and Chlamydia trachomatis. Mol Microbiol 1993, 7:937-946. 10.1111/j.1365-2958.1993.tb01185.x, 8483421.
-
(1993)
Mol Microbiol
, vol.7
, pp. 937-946
-
-
Mathews, S.A.1
Douglas, A.2
Sriprakash, K.S.3
Hatch, T.P.4
-
16
-
-
48049096209
-
Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of infection.
-
10.1093/dnares/dsm032, 2650627, 18222926
-
Miura K, Toh H, Hirakawa H, Sugii M, Murata M, Nakai K, Tashiro K, Kuhara S, Azuma Y, Shirai M. Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of infection. DNA Res 2008, 15:83-91. 10.1093/dnares/dsm032, 2650627, 18222926.
-
(2008)
DNA Res
, vol.15
, pp. 83-91
-
-
Miura, K.1
Toh, H.2
Hirakawa, H.3
Sugii, M.4
Murata, M.5
Nakai, K.6
Tashiro, K.7
Kuhara, S.8
Azuma, Y.9
Shirai, M.10
-
17
-
-
0029081859
-
Characterization of late gene promoters of Chlamydia trachomatis.
-
177170, 7543468
-
Fahr MJ, Douglas AL, Xia W, Hatch TP. Characterization of late gene promoters of Chlamydia trachomatis. J Bacteriol 1995, 177:4252-4260. 177170, 7543468.
-
(1995)
J Bacteriol
, vol.177
, pp. 4252-4260
-
-
Fahr, M.J.1
Douglas, A.L.2
Xia, W.3
Hatch, T.P.4
-
18
-
-
0142030043
-
Sigma28 RNA polymerase regulates hctB, a late developmental gene in Chlamydia.
-
10.1046/j.1365-2958.2003.03708.x, 2810255, 14617180
-
Yu HH, Tan M. Sigma28 RNA polymerase regulates hctB, a late developmental gene in Chlamydia. Mol Microbiol 2003, 50:577-584. 10.1046/j.1365-2958.2003.03708.x, 2810255, 14617180.
-
(2003)
Mol Microbiol
, vol.50
, pp. 577-584
-
-
Yu, H.H.1
Tan, M.2
-
19
-
-
75749139320
-
Serodiagnosis of Chlamydia pneumoniae infection using three inclusion membrane proteins.
-
10.1002/jcla.20367, 20087957
-
Hongliang C, Zhou Z, Zhan H, Yanhua Z, Zhongyu L, Yingbiao L, Guozhi D, Yimou W. Serodiagnosis of Chlamydia pneumoniae infection using three inclusion membrane proteins. J Clin Lab Anal 2010, 24:55-61. 10.1002/jcla.20367, 20087957.
-
(2010)
J Clin Lab Anal
, vol.24
, pp. 55-61
-
-
Hongliang, C.1
Zhou, Z.2
Zhan, H.3
Yanhua, Z.4
Zhongyu, L.5
Yingbiao, L.6
Guozhi, D.7
Yimou, W.8
-
20
-
-
36749006634
-
Chlamydia pneumoniae inclusion membrane protein Cpn0585 interacts with multiple Rab GTPases.
-
10.1128/IAI.01020-07, 2168330, 17908815
-
Cortes C, Rzomp KA, Tvinnereim A, Scidmore MA, Wizel B. Chlamydia pneumoniae inclusion membrane protein Cpn0585 interacts with multiple Rab GTPases. Infect Immun 2007, 75:5586-5596. 10.1128/IAI.01020-07, 2168330, 17908815.
-
(2007)
Infect Immun
, vol.75
, pp. 5586-5596
-
-
Cortes, C.1
Rzomp, K.A.2
Tvinnereim, A.3
Scidmore, M.A.4
Wizel, B.5
-
21
-
-
77950349491
-
Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome.
-
10.1093/nar/gkp1032, 2817459, 19923228
-
Albrecht M, Sharma CM, Reinhardt R, Vogel J, Rudel T. Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome. Nucleic Acids Res 2010, 38:868-877. 10.1093/nar/gkp1032, 2817459, 19923228.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 868-877
-
-
Albrecht, M.1
Sharma, C.M.2
Reinhardt, R.3
Vogel, J.4
Rudel, T.5
-
22
-
-
79953126972
-
Developmental expression of non-coding RNAs in Chlamydia trachomatis during normal and persistent growth.
-
3061062, 21051342
-
Abdelrahman YM, Rose LA, Belland RJ. Developmental expression of non-coding RNAs in Chlamydia trachomatis during normal and persistent growth. Nucleic Acids Res 2010, 39:1843-1854. 3061062, 21051342.
-
(2010)
Nucleic Acids Res
, vol.39
, pp. 1843-1854
-
-
Abdelrahman, Y.M.1
Rose, L.A.2
Belland, R.J.3
-
23
-
-
33645064277
-
A small RNA inhibits translation of the histone-like protein Hc1 in Chlamydia trachomatis.
-
10.1111/j.1365-2958.2005.04949.x, 16390448
-
Grieshaber NA, Grieshaber SS, Fischer ER, Hackstadt T. A small RNA inhibits translation of the histone-like protein Hc1 in Chlamydia trachomatis. Mol Microbiol 2006, 59:541-550. 10.1111/j.1365-2958.2005.04949.x, 16390448.
-
(2006)
Mol Microbiol
, vol.59
, pp. 541-550
-
-
Grieshaber, N.A.1
Grieshaber, S.S.2
Fischer, E.R.3
Hackstadt, T.4
-
24
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori.
-
10.1038/nature08756, 20164839
-
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, Sittka A, Chabas S, Reiche K, Hackermüller J, Reinhardt R, Stadler PF, Vogel J. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 2010, 464:250-255. 10.1038/nature08756, 20164839.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
Sittka, A.6
Chabas, S.7
Reiche, K.8
Hackermüller, J.9
Reinhardt, R.10
Stadler, P.F.11
Vogel, J.12
-
25
-
-
76049099044
-
Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability.
-
10.1073/pnas.0909051106, 2799843, 19996181
-
Jager D, Sharma CM, Thomsen J, Ehlers C, Vogel J, Schmitz RA. Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability. Proc Natl Acad Sci USA 2009, 106:21878-21882. 10.1073/pnas.0909051106, 2799843, 19996181.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21878-21882
-
-
Jager, D.1
Sharma, C.M.2
Thomsen, J.3
Ehlers, C.4
Vogel, J.5
Schmitz, R.A.6
-
26
-
-
34249710152
-
Characterization of hypothetical proteins Cpn0146, 0147, 0284 & 0285 that are predicted to be in the Chlamydia pneumoniae inclusion membrane.
-
10.1186/1471-2180-7-38, 1878484, 17504539
-
Luo J, Liu G, Zhong Y, Jia T, Liu K, Chen D, Zhong G. Characterization of hypothetical proteins Cpn0146, 0147, 0284 & 0285 that are predicted to be in the Chlamydia pneumoniae inclusion membrane. BMC Microbiol 2007, 7:38. 10.1186/1471-2180-7-38, 1878484, 17504539.
-
(2007)
BMC Microbiol
, vol.7
, pp. 38
-
-
Luo, J.1
Liu, G.2
Zhong, Y.3
Jia, T.4
Liu, K.5
Chen, D.6
Zhong, G.7
-
27
-
-
0034235888
-
Identification and characterization of promoters regulating tuf expression in Chlamydia trachomatis serovar F.
-
10.1006/abbi.2000.1854, 10864440
-
Shen L, Shi Y, Douglas AL, Hatch TP, O'Connell CM, Chen JM, Zhang YX. Identification and characterization of promoters regulating tuf expression in Chlamydia trachomatis serovar F. Arch Biochem Biophys 2000, 379:46-56. 10.1006/abbi.2000.1854, 10864440.
-
(2000)
Arch Biochem Biophys
, vol.379
, pp. 46-56
-
-
Shen, L.1
Shi, Y.2
Douglas, A.L.3
Hatch, T.P.4
O'Connell, C.M.5
Chen, J.M.6
Zhang, Y.X.7
-
28
-
-
0029847651
-
Identification of sequences necessary for transcription in vitro from the Chlamydia trachomatis rRNA P1 promoter.
-
178601, 8955322
-
Tan M, Engel JN. Identification of sequences necessary for transcription in vitro from the Chlamydia trachomatis rRNA P1 promoter. J Bacteriol 1996, 178:6975-6982. 178601, 8955322.
-
(1996)
J Bacteriol
, vol.178
, pp. 6975-6982
-
-
Tan, M.1
Engel, J.N.2
-
29
-
-
0029830433
-
Transcriptional organization and regulation of the dnaK and groE operons of Chlamydia trachomatis.
-
178602, 8955323
-
Tan M, Wong B, Engel JN. Transcriptional organization and regulation of the dnaK and groE operons of Chlamydia trachomatis. J Bacteriol 1996, 178:6983-6990. 178602, 8955323.
-
(1996)
J Bacteriol
, vol.178
, pp. 6983-6990
-
-
Tan, M.1
Wong, B.2
Engel, J.N.3
-
30
-
-
0023576686
-
Chlamydial rRNA operons: gene organization and identification of putative tandem promoters.
-
214038, 2445732
-
Engel JN, Ganem D. Chlamydial rRNA operons: gene organization and identification of putative tandem promoters. J Bacteriol 1987, 169:5678-5685. 214038, 2445732.
-
(1987)
J Bacteriol
, vol.169
, pp. 5678-5685
-
-
Engel, J.N.1
Ganem, D.2
-
31
-
-
0027463081
-
Transcriptional analysis of the Chlamydia trachomatis plasmid pCT identifies temporally regulated transcripts, anti-sense RNA and sigma 70-selected promoters.
-
Ricci S, Cevenini R, Cosco E, Comanducci M, Ratti G, Scarlato V. Transcriptional analysis of the Chlamydia trachomatis plasmid pCT identifies temporally regulated transcripts, anti-sense RNA and sigma 70-selected promoters. Mol Gen Genet 1993, 237:318-326.
-
(1993)
Mol Gen Genet
, vol.237
, pp. 318-326
-
-
Ricci, S.1
Cevenini, R.2
Cosco, E.3
Comanducci, M.4
Ratti, G.5
Scarlato, V.6
-
32
-
-
0019514724
-
Purification and partial characterization of the major outer membrane protein of Chlamydia trachomatis.
-
351439, 7228399
-
Caldwell HD, Kromhout J, Schachter J. Purification and partial characterization of the major outer membrane protein of Chlamydia trachomatis. Infect Immun 1981, 31:1161-1176. 351439, 7228399.
-
(1981)
Infect Immun
, vol.31
, pp. 1161-1176
-
-
Caldwell, H.D.1
Kromhout, J.2
Schachter, J.3
-
33
-
-
0023958998
-
Developmental regulation of tandem promoters for the major outer membrane protein gene of Chlamydia trachomatis.
-
210717, 2448291
-
Stephens RS, Wagar EA, Edman U. Developmental regulation of tandem promoters for the major outer membrane protein gene of Chlamydia trachomatis. J Bacteriol 1988, 170:744-750. 210717, 2448291.
-
(1988)
J Bacteriol
, vol.170
, pp. 744-750
-
-
Stephens, R.S.1
Wagar, E.A.2
Edman, U.3
-
34
-
-
0028882486
-
Functional analysis of the major outer membrane protein gene promoters of Chlamydia trachomatis.
-
177471, 7592396
-
Douglas AL, Hatch TP. Functional analysis of the major outer membrane protein gene promoters of Chlamydia trachomatis. J Bacteriol 1995, 177:6286-6289. 177471, 7592396.
-
(1995)
J Bacteriol
, vol.177
, pp. 6286-6289
-
-
Douglas, A.L.1
Hatch, T.P.2
-
35
-
-
33845919357
-
Chlamydial type III secretion system is encoded on ten operons preceded by sigma 70-like promoter elements.
-
10.1128/JB.01034-06, 1797217, 17056752
-
Hefty PS, Stephens RS. Chlamydial type III secretion system is encoded on ten operons preceded by sigma 70-like promoter elements. J Bacteriol 2007, 189:198-206. 10.1128/JB.01034-06, 1797217, 17056752.
-
(2007)
J Bacteriol
, vol.189
, pp. 198-206
-
-
Hefty, P.S.1
Stephens, R.S.2
-
36
-
-
75549088819
-
MicrobesOnline: an integrated portal for comparative and functional genomics.
-
10.1093/nar/gkp919, 2808868, 19906701
-
Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP. MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res 2010, 38:D396-400. 10.1093/nar/gkp919, 2808868, 19906701.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Dehal, P.S.1
Joachimiak, M.P.2
Price, M.N.3
Bates, J.T.4
Baumohl, J.K.5
Chivian, D.6
Friedland, G.D.7
Huang, K.H.8
Keller, K.9
Novichkov, P.S.10
Dubchak, I.L.11
Alm, E.J.12
Arkin, A.P.13
-
37
-
-
58149200939
-
DOOR: a database for prokaryotic operons.
-
10.1093/nar/gkn757, 2686520, 18988623
-
Mao F, Dam P, Chou J, Olman V, Xu Y. DOOR: a database for prokaryotic operons. Nucleic Acids Res 2009, 37:D459-463. 10.1093/nar/gkn757, 2686520, 18988623.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Mao, F.1
Dam, P.2
Chou, J.3
Olman, V.4
Xu, Y.5
-
38
-
-
33845450357
-
Synthesis-mediated release of a small RNA inhibitor of RNA polymerase.
-
10.1126/science.1134830, 17158328
-
Wassarman KM, Saecker RM. Synthesis-mediated release of a small RNA inhibitor of RNA polymerase. Science 2006, 314:1601-1603. 10.1126/science.1134830, 17158328.
-
(2006)
Science
, vol.314
, pp. 1601-1603
-
-
Wassarman, K.M.1
Saecker, R.M.2
-
39
-
-
70349667200
-
Fast mapping of short sequences with mismatches, insertions and deletions using index structures.
-
10.1371/journal.pcbi.1000502, 2730575, 19750212
-
Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermuller J. Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput Biol 2009, 5:e1000502. 10.1371/journal.pcbi.1000502, 2730575, 19750212.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Hoffmann, S.1
Otto, C.2
Kurtz, S.3
Sharma, C.M.4
Khaitovich, P.5
Vogel, J.6
Stadler, P.F.7
Hackermuller, J.8
-
40
-
-
33846001351
-
Hypothetical protein Cpn0308 is localized in the Chlamydia pneumoniae inclusion membrane.
-
10.1128/IAI.00935-06, 1828390, 17101661
-
Luo J, Jia T, Flores R, Chen D, Zhong G. Hypothetical protein Cpn0308 is localized in the Chlamydia pneumoniae inclusion membrane. Infect Immun 2007, 75:497-503. 10.1128/IAI.00935-06, 1828390, 17101661.
-
(2007)
Infect Immun
, vol.75
, pp. 497-503
-
-
Luo, J.1
Jia, T.2
Flores, R.3
Chen, D.4
Zhong, G.5
-
41
-
-
33947407229
-
Characterization of the hypothetical protein Cpn1027, a newly identified inclusion membrane protein unique to Chlamydia pneumoniae.
-
10.1099/mic.0.2006/002956-0, 17322198
-
Flores R, Luo J, Chen D, Sturgeon G, Shivshankar P, Zhong Y, Zhong G. Characterization of the hypothetical protein Cpn1027, a newly identified inclusion membrane protein unique to Chlamydia pneumoniae. Microbiology 2007, 153:777-786. 10.1099/mic.0.2006/002956-0, 17322198.
-
(2007)
Microbiology
, vol.153
, pp. 777-786
-
-
Flores, R.1
Luo, J.2
Chen, D.3
Sturgeon, G.4
Shivshankar, P.5
Zhong, Y.6
Zhong, G.7
-
42
-
-
0037586531
-
Genomic transcriptional profiling of the developmental cycle of Chlamydia trachomatis.
-
10.1073/pnas.1331135100, 166254, 12815105
-
Belland RJ, Zhong G, Crane DD, Hogan D, Sturdevant D, Sharma J, Beatty WL, Caldwell HD. Genomic transcriptional profiling of the developmental cycle of Chlamydia trachomatis. Proc Natl Acad Sci USA 2003, 100:8478-8483. 10.1073/pnas.1331135100, 166254, 12815105.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8478-8483
-
-
Belland, R.J.1
Zhong, G.2
Crane, D.D.3
Hogan, D.4
Sturdevant, D.5
Sharma, J.6
Beatty, W.L.7
Caldwell, H.D.8
-
43
-
-
0033759269
-
Identification and mapping of sigma-54 promoters in Chlamydia trachomatis.
-
10.1128/JB.182.21.6239-6242.2000, 94762, 11029448
-
Mathews SA, Timms P. Identification and mapping of sigma-54 promoters in Chlamydia trachomatis. J Bacteriol 2000, 182:6239-6242. 10.1128/JB.182.21.6239-6242.2000, 94762, 11029448.
-
(2000)
J Bacteriol
, vol.182
, pp. 6239-6242
-
-
Mathews, S.A.1
Timms, P.2
-
44
-
-
33746591211
-
Mutational analysis of the promoter recognized by Chlamydia and Escherichia coli sigma(28) RNA polymerase.
-
10.1128/JB.00480-06, 1540034, 16855242
-
Yu HH, Di Russo EG, Rounds MA, Tan M. Mutational analysis of the promoter recognized by Chlamydia and Escherichia coli sigma(28) RNA polymerase. J Bacteriol 2006, 188:5524-5531. 10.1128/JB.00480-06, 1540034, 16855242.
-
(2006)
J Bacteriol
, vol.188
, pp. 5524-5531
-
-
Yu, H.H.1
Di Russo, E.G.2
Rounds, M.A.3
Tan, M.4
-
45
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
-
Bailey TL, Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 1994, 2:28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
46
-
-
0037440007
-
Mutational analysis of the Chlamydia trachomatis dnaK promoter defines the optimal -35 promoter element.
-
10.1093/nar/gkg150, 140514, 12527761
-
Schaumburg CS, Tan M. Mutational analysis of the Chlamydia trachomatis dnaK promoter defines the optimal -35 promoter element. Nucleic Acids Res 2003, 31:551-555. 10.1093/nar/gkg150, 140514, 12527761.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 551-555
-
-
Schaumburg, C.S.1
Tan, M.2
-
47
-
-
0031956095
-
Mutational analysis of the Chlamydia trachomatis rRNA P1 promoter defines four regions important for transcription in vitro.
-
107176, 9573186
-
Tan M, Gaal T, Gourse RL, Engel JN. Mutational analysis of the Chlamydia trachomatis rRNA P1 promoter defines four regions important for transcription in vitro. J Bacteriol 1998, 180:2359-2366. 107176, 9573186.
-
(1998)
J Bacteriol
, vol.180
, pp. 2359-2366
-
-
Tan, M.1
Gaal, T.2
Gourse, R.L.3
Engel, J.N.4
-
48
-
-
0033570908
-
Compilation and analysis of sigma(54)-dependent promoter sequences.
-
10.1093/nar/27.22.4305, 148710, 10536136
-
Barrios H, Valderrama B, Morett E. Compilation and analysis of sigma(54)-dependent promoter sequences. Nucleic Acids Res 1999, 27:4305-4313. 10.1093/nar/27.22.4305, 148710, 10536136.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4305-4313
-
-
Barrios, H.1
Valderrama, B.2
Morett, E.3
-
49
-
-
0033980338
-
Novel roles of sigmaN in small genomes.
-
Studholme DJ, Buck M. Novel roles of sigmaN in small genomes. Microbiology 2000, 146:4-5.
-
(2000)
Microbiology
, vol.146
, pp. 4-5
-
-
Studholme, D.J.1
Buck, M.2
-
50
-
-
13944268797
-
A novel method for accurate operon predictions in all sequenced prokaryotes.
-
10.1093/nar/gki232, 549399, 15701760
-
Price MN, Huang KH, Alm EJ, Arkin AP. A novel method for accurate operon predictions in all sequenced prokaryotes. Nucleic Acids Res 2005, 33:880-892. 10.1093/nar/gki232, 549399, 15701760.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 880-892
-
-
Price, M.N.1
Huang, K.H.2
Alm, E.J.3
Arkin, A.P.4
-
51
-
-
33751580889
-
In silico prediction and functional validation of sigma28-regulated genes in Chlamydia and Escherichia coli.
-
10.1128/JB.01082-06, 1698183, 16997971
-
Yu HH, Kibler D, Tan M. In silico prediction and functional validation of sigma28-regulated genes in Chlamydia and Escherichia coli. J Bacteriol 2006, 188:8206-8212. 10.1128/JB.01082-06, 1698183, 16997971.
-
(2006)
J Bacteriol
, vol.188
, pp. 8206-8212
-
-
Yu, H.H.1
Kibler, D.2
Tan, M.3
-
52
-
-
0038561166
-
Global stage-specific gene regulation during the developmental cycle of Chlamydia trachomatis.
-
10.1128/JB.185.10.3179-3189.2003, 154084, 12730178
-
Nicholson TL, Olinger L, Chong K, Schoolnik G, Stephens RS. Global stage-specific gene regulation during the developmental cycle of Chlamydia trachomatis. J Bacteriol 2003, 185:3179-3189. 10.1128/JB.185.10.3179-3189.2003, 154084, 12730178.
-
(2003)
J Bacteriol
, vol.185
, pp. 3179-3189
-
-
Nicholson, T.L.1
Olinger, L.2
Chong, K.3
Schoolnik, G.4
Stephens, R.S.5
-
53
-
-
34249034599
-
Sigma 28 promoter prediction in members of the Gammaproteobacteria.
-
10.1111/j.1574-6968.2007.00720.x, 17439543
-
Song W, Maiste PJ, Naiman DQ, Ward MJ. Sigma 28 promoter prediction in members of the Gammaproteobacteria. FEMS Microbiol Lett 2007, 271:222-229. 10.1111/j.1574-6968.2007.00720.x, 17439543.
-
(2007)
FEMS Microbiol Lett
, vol.271
, pp. 222-229
-
-
Song, W.1
Maiste, P.J.2
Naiman, D.Q.3
Ward, M.J.4
-
54
-
-
33751548288
-
Diversity of microRNAs in human and chimpanzee brain.
-
10.1038/ng1914, 17072315
-
Berezikov E, Thuemmler F, van Laake LW, Kondova I, Bontrop R, Cuppen E, Plasterk RH. Diversity of microRNAs in human and chimpanzee brain. Nat Genet 2006, 38:1375-1377. 10.1038/ng1914, 17072315.
-
(2006)
Nat Genet
, vol.38
, pp. 1375-1377
-
-
Berezikov, E.1
Thuemmler, F.2
van Laake, L.W.3
Kondova, I.4
Bontrop, R.5
Cuppen, E.6
Plasterk, R.H.7
-
55
-
-
81955163600
-
NCBI Gene Expression Omnibus: dRNA-Seq of Chlamydia pneumonia.
-
NCBI Gene Expression Omnibus: dRNA-Seq of Chlamydia pneumonia. , http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24999
-
-
-
-
56
-
-
81955163603
-
WU-BLAST.
-
WU-BLAST. , http://blast.wustl.edu/
-
-
-
-
57
-
-
33645345590
-
Integrated Genome Browser.
-
Integrated Genome Browser. , http://www.affymetrix.com/partners_programs/programs/developer/tools/download_igb.affx
-
-
-
-
58
-
-
50849105413
-
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq.
-
10.1371/journal.pgen.1000163, 2515195, 18725932
-
Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, Hinton JC, Vogel J. Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet 2008, 4:e1000163. 10.1371/journal.pgen.1000163, 2515195, 18725932.
-
(2008)
PLoS Genet
, vol.4
-
-
Sittka, A.1
Lucchini, S.2
Papenfort, K.3
Sharma, C.M.4
Rolle, K.5
Binnewies, T.T.6
Hinton, J.C.7
Vogel, J.8
-
59
-
-
58249121729
-
RNAalifold: improved consensus structure prediction for RNA alignments.
-
10.1186/1471-2105-9-474, 2621365, 19014431
-
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF. RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 2008, 9:474. 10.1186/1471-2105-9-474, 2621365, 19014431.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 474
-
-
Bernhart, S.H.1
Hofacker, I.L.2
Will, S.3
Gruber, A.R.4
Stadler, P.F.5
-
60
-
-
84871106113
-
R Project.
-
R Project. , http://www.R-project.org
-
-
-
-
61
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach.
-
10.1007/BF01734359, 7288891
-
Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981, 17:368-376. 10.1007/BF01734359, 7288891.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
62
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments.
-
10.1186/1471-2105-11-94, 2838869, 20167110
-
Bullard JH, Purdom E, Hansen KD, Dudoit S. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 2010, 11:94. 10.1186/1471-2105-11-94, 2838869, 20167110.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 94
-
-
Bullard, J.H.1
Purdom, E.2
Hansen, K.D.3
Dudoit, S.4
-
63
-
-
77953916879
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing.
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Statist Soc 1994, 57:11.
-
(1994)
J R Statist Soc
, vol.57
, pp. 11
-
-
Benjamini, Y.1
Hochberg, Y.2
|