High-throughput single-microparticle imaging flow analyzer

Proceedings of the National Academy of Sciences of the United States of America

Volumn 109, Issue 29, 2012, Pages 11630-11635

  Goda, Keisuke ^a,b,c   Ayazi, Ali ^a   Gossett, Daniel R ^b,c   Sadasivam, Jagannath ^a   Lonappan, Cejo K ^a   Sollier, Elodie ^b,c   Fard, Ali M ^a,b   Hur, Soojung Claire ^a,b   Adam, Jost ^a   Murray, Coleman ^c   Wang, Chao ^a   Brackbill, Nora ^a   Di Carlo, Dino ^b,c   Jalali, Bahram ^a,b,c,d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b CALIFORNIA NANOSYSTEMS INSTITUTE   (United States)

^c Department of Civil and Environmental Engineering   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

High throughput screening; Instrumentation; Medical diagnostics; Microfluidics; Photonics

Indexed keywords

ACCURACY; ARTICLE; BREAST CANCER; CANCER CELL; FALSE POSITIVE RESULT; FLOW MEASUREMENT; HIGH THROUGHPUT SCREENING; HUMAN; IMAGE ANALYSIS; MICROFLUIDIC ANALYSIS; MICROSCOPY; NONHUMAN; PRIORITY JOURNAL; YEAST;

CELL LINE, TUMOR; DIAGNOSTIC IMAGING; FEMALE; FLOW CYTOMETRY; HIGH-THROUGHPUT SCREENING ASSAYS; HUMANS; MICROFLUIDIC ANALYTICAL TECHNIQUES; MICROSCOPY, VIDEO; SACCHAROMYCETALES;

SACCHAROMYCETALES;

EID: 84863938828     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1204718109     Document Type: Article

References (45)

1. Mertz JC (2009) Introduction to Optical Microscopy (Roberts and Company Publishers, Greenwood Village, CO).
2. Pawley J (2006) Handbook of Biological Confocal Microscopy (Springer, New York).
3. Drapcho C, Nghiem J, Walker T (2008) Biofuels Engineering Process Technology (McGraw-Hill Professional, New York).
4. Wollman R, Stuurman N (2007) High throughput microscopy: From raw images to discoveries. J Cell Sci 120:3715-3722. (Pubitemid 350187353)
5. Tse HTK, Meng P, Gossett DR, Irturk A, Kastner R, Di Carlo D (2011) Strategies for implementing hardware-assisted high-throughput cellular image analysis. J Lab Autom 16:422-430.
6. Ash EA, Nicholls G (1972) Super-resolution aperture scanning microscope. Nature 237:510-512.
7. Chi KR (2009) Super-resolution microscopy: Breaking the limits. Nat Methods 6:15-18.
8. Hell SW (2007) Far-field optical nanoscopy. Science 316:1153-1158.
9. Conrad C, Gerlich DW(2010) Automated microscopy for high-content RNAi screening. J Cell Biol 188:453-461.
10. Lang P, Yeow K, Nichols A, Scheer A (2006) Cellular imaging in drug discovery. Nat Rev Drug Discov 5:343-356.
11. Basiji DA, Ortyn WE, Liang L, Venkatachalam V, Morrissey P (2007) Cellular image analysis and imaging by flow cytometry. Clin Lab Med 27:653-670. (Pubitemid 47068811)
12. Brown L (2011) Characterizing biologics using dynamic imaging particle analysis. BioPharm Int 24:s2-s7.
13. Coulter WH (1953) Means for counting particles suspended in a fluid. US Patent 2656508.
14. Zhe J, Jagtiani A, Dutta P, Hu H, Carletta J (2007) A micromachined high throughput Coulter counter for bioparticle detection and counting. J Micromech Microeng 17:304-313. (Pubitemid 46778498)
15. Shapiro HM (2003) Practical Flow Cytometry (Wiley-Liss, New York).
16. Bonner WA, Hulett HR, Sweet RG, Herzenberg LA (1972) Fluorescence activated cell sorting. Rev Sci Instrum 43:404-409.
17. Nishino N, et al. (2005) High-speed 2-D image measurement for plasma-wall interaction studies. J Nucl Mater 337:1073-1076. (Pubitemid 40259377)
18. Tiwari V, Sutton MA, McNeill SR (2007) Assessment of high speed imaging systems for 2D and 3D deformation measurements: Methodology development and validation. Exp Mech 47:561-579. (Pubitemid 47097502)
19. Thoroddsen ST, Etoh TG, Takehara K (2008) High-speed imaging of drops and bubbles. Annu Rev Fluid Mech 40:257-285. (Pubitemid 351234701)
20. Holst GC, Lomheim TS (2011) CMOS/CCD Sensors and Camera Systems (SPIE Publications, Bellingham).
21. Baker M (2011) Faster frames, clearer pictures. Nat Methods 8:1005-1009.
22. Goda K, Tsia KK, Jalali B (2009) Serial time-encoded amplified imaging for real-time observation of fast dynamic phenomena. Nature 458:1145-1149.
23. Goda K, Tsia KK, Jalali B (2008) Amplified dispersive Fourier-transform imaging for ultrafast displacement sensing and barcode reading. Appl Phys Lett 93:131109.
24. Di Carlo D (2009) Inertial microfluidics. Lab Chip 9:3038-3046.
25. Di Carlo D, Irimia D, Tompkins RG, Toner M (2007) Continuous inertial focusing, ordering, and separation of particles in microchannels. Proc Natl Acad Sci USA 104:18892-18897.
26. Gossett DR, Di Carlo D (2009) Particle focusing mechanisms in curving confined flows. Anal Chem 81:8459-8465.
27. Lee W, Amini H, Stone HA, Di Carlo D (2010) Dynamic self-assembly and control of microfluidic particle crystals. Proc Natl Acad Sci USA 107:22413-22418.
28. Sollier E, Murray C, Maoddi P, Di Carlo D (2011) Rapid prototyping polymers for microfluidic devices and high pressure injections. Lab Chip 11:3752-3765.
29. Goda K, Solli DR, Tsia KK, Jalali B (2009) Theory of amplified dispersive Fourier transformation. Phys Rev A 80:043821.
30. Goda K, Jalali B (2010) Noise figure of amplified dispersive Fourier transformation. Phys Rev A 82:033827.
31. Chou J, Boyraz O, Solli DR, Jalali B (2007) Femtosecond real-time single-shot digitizer. Appl Phys Lett 91:161105.
32. Solli DR, Chou J, Jalali B (2008) Amplified wavelength-time transformation for real-time spectroscopy. Nat Photonics 2:48-51.
33. Kilts S (2007) Advanced FPGA Design: Architecture, Implementation, and Optimization (Wiley-IEEE Press, New York).
34. Saww R, Schmidt AG (2010) Embedded Systems Design with Platform FPGAs: Principles and Practices (Morgan Kaufmann, New York).
35. Cristianini N, Shawe-Taylor J (2000) An Introduction to Support Vector Machines and Other Kernel-Based Learning Methods (Cambridge University Press, Cambridge, UK).
36. Wang L (2005) Support Vector Machines: Theory and Applications (Springer, New York).
37. Huls PG, et al. (1992) A computer-aided measuring system for the characterization of yeast populations combining 2D-image analysis, electronic particle counter, and flow cytometry. Biotechnol Bioeng 39:343-350.
38. Calvert ME, Lannigan JA, Pemberton LF (2008) Optimization of yeast cell cycle analysis and morphological characterization by multispectral imaging flow cytometry. Cytometry A 73:825-833.
39. Little MT, Storb R (2002) History of hematopoietic stem-cell transplantation. Nat Rev Cancer 2:231-238.
40. Moon JJ, et al. (2009) Tracking epitope-specific T cells. Nat Protoc 4:565-581.
41. Cristofanilli M, et al. (2004) Circulating tumor cells, disease progression, and survival in metastatic breast cancer. N Engl J Med 351:781-791. (Pubitemid 39095313)
42. Nagrath S, et al. (2007) Isolation of rare circulating tumor cells in cancer patients by microchip technology. Nature 450:1235-1239.
43. Rosenblatt JI, Hokanson JA, Mclaughlin SR, Leary JF (1997) Theoretical basis for sampling statistics useful for detecting and isolating rare cells using flow cytometry and cell sorting. Cytometry 27:233-238. (Pubitemid 27130201)
44. Zweig MH, Campbell G (1993) Receiver-operating characteristic (ROC) plots: A fundamental evaluation tool in clinical medicine. Clin Chem 39:561-577. (Pubitemid 23118304)
45. Pepe MS (2004) The Statistical Evaluation of Medical Tests for Classification and Prediction (Oxford University Press, New York).