-
1
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
The 1000 Genomes Project Consortium
-
The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
2
-
-
42449161413
-
The editing enzyme ADAR1 and the mRNA surveillance protein hUpf1 interact in the cell nucleus
-
DOI 10.1073/pnas.0710576105
-
Agranat L, Raitskin O, Sperling J, Sperling R. 2008. The editing enzyme ADAR and the mRNA surveillance protein hUpf1 interact in the cell nucleus. Proc Natl Acad Sci 105: 5028-5033. (Pubitemid 351738504)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.13
, pp. 5028-5033
-
-
Agranat, L.1
Raitskin, O.2
Sperling, J.3
Sperling, R.4
-
3
-
-
12344300804
-
Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
-
doi: 10.1371/journal.pbio.0020391
-
Athanasiadis A, Rich A, Maas S. 2004.Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLoS Biol 2: e391. doi: 10.1371/journal.pbio.0020391.
-
(2004)
PLoS Biol
, vol.2
-
-
Athanasiadis, A.1
Rich, A.2
Maas, S.3
-
4
-
-
84855320189
-
Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
-
Bahn JH, Lee JH, Li G, Greer C, Peng G, Xiao X. 2012. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res 22: 142-150.
-
(2012)
Genome Res
, vol.22
, pp. 142-150
-
-
Bahn, J.H.1
Lee, J.H.2
Li, G.3
Greer, C.4
Peng, G.5
Xiao, X.6
-
5
-
-
0030916712
-
Regulation of serotonin-2C receptor G-protein coupling by RNA editing
-
DOI 10.1038/387303a0
-
Burns CM, Chu H, Rueter SM, Hutchinson LK, Canton H, Sanders-Bush E, Emeson RB. 1997. Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature 387: 303-308. (Pubitemid 27220768)
-
(1997)
Nature
, vol.387
, Issue.6630
, pp. 303-308
-
-
Burns, C.M.1
Chu, H.2
Rueter, S.M.3
Hutchinson, L.K.4
Canton, H.5
Sanders-Bush, E.6
Emeson, R.B.7
-
6
-
-
42749093007
-
Down-regulation of RNA editing in pediatric astrocytomas: ADARB1 editing activity inhibits cell migration and proliferation
-
Cenci C, Barzotti R, Galeano F, Corbelli S, Rota R, Massimi L, Di Rocco C, O'Connell MA, Gallo A. 2008. Down-regulation of RNA editing in pediatric astrocytomas: ADARB1 editing activity inhibits cell migration and proliferation. J Biol Chem 283: 7251-7260.
-
(2008)
J Biol Chem
, vol.283
, pp. 7251-7260
-
-
Cenci, C.1
Barzotti, R.2
Galeano, F.3
Corbelli, S.4
Rota, R.5
Massimi, L.6
Di Rocco, C.7
O'Connell, M.A.8
Gallo, A.9
-
7
-
-
3142756502
-
Open source clustering software
-
DOI 10.1093/bioinformatics/bth078
-
de Hoon MJL, Imoto S, Nolan J, Miyano S. 2004. Open Source Clustering Software. Bioinformatics 20: 1453-1454. (Pubitemid 38931415)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1453-1454
-
-
De Hoon, M.J.L.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
8
-
-
70749142026
-
Editing of HIV-1 RNA by the double-stranded RNA deaminase ADAR stimulates viral infection
-
Doria M, Neri F, Gallo A, Farace MG, Michienzi A. 2009. Editing of HIV-1 RNA by the double-stranded RNA deaminase ADAR stimulates viral infection. Nucleic Acids Res 37: 5848-5858.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5848-5858
-
-
Doria, M.1
Neri, F.2
Gallo, A.3
Farace, M.G.4
Michienzi, A.5
-
9
-
-
0035369742
-
RNA editing by base deamination: More enzymes, more targets, new mysteries
-
DOI 10.1016/S0968-0004(01)01827-8, PII S0968000401018278
-
Gerber AP, Keller W. 2001. RNA editing by base deamination: more enzymes, more targets, new mysteries. Trends Biochem Sci 26: 376-384. (Pubitemid 32530656)
-
(2001)
Trends in Biochemical Sciences
, vol.26
, Issue.6
, pp. 376-384
-
-
Gerber, A.P.1
Keller, W.2
-
10
-
-
57849167057
-
A new function for the RNA-editing enzyme ADAR
-
Iizasa H, Nishikura K. 2009. A new function for the RNA-editing enzyme ADAR. Nat Immunol 10: 16-18.
-
(2009)
Nat Immunol
, vol.10
, pp. 16-18
-
-
Iizasa, H.1
Nishikura, K.2
-
11
-
-
0027972952
-
Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing
-
DOI 10.1073/pnas.91.24.11457
-
Kim U, Wang Y, Sanford T, Zeng Y, Nishikura K. 1994. Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing. Proc Natl Acad Sci 91: 11457-11461. (Pubitemid 24356363)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.24
, pp. 11457-11461
-
-
Kim, U.1
Wang, Y.2
Sanford, T.3
Zeng, Y.4
Nishikura, K.5
-
12
-
-
4644324088
-
Widespread RNA editing of embedded Alu elements in the human transcriptome
-
DOI 10.1101/gr.2855504
-
Kim DD, Kim TT, Walsh T, Kobayashi Y, Matise TC, Buyske S, Gabriel A. 2004. Widespread RNA editing of embedded Alu elements in the human transcriptome. Genome Res 14: 1719-1725. (Pubitemid 39276429)
-
(2004)
Genome Research
, vol.14
, Issue.9
, pp. 1719-1725
-
-
Kim, D.D.Y.1
Kim, T.T.Y.2
Walsh, T.3
Kobayashi, Y.4
Matise, T.C.5
Buyske, S.6
Gabriel, A.7
-
13
-
-
77954505224
-
DARNED: A DAtabase of RNa EDiting in humans
-
Kiran A, Baranov PV. 2010. DARNED: A DAtabase of RNa EDiting in humans. Bioinformatics 26: 772-776.
-
(2010)
Bioinformatics
, vol.26
, pp. 772-776
-
-
Kiran, A.1
Baranov, P.V.2
-
14
-
-
84858328300
-
Comment on "Widespread RNA and DNA sequence differences in the human transcriptome."
-
doi: 10.1126/science.1209658
-
Kleinman CL, Majewski J. 2012. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome." Science 335: 1302. doi: 10.1126/science.1209658.
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Kleinman, C.L.1
Majewski, J.2
-
16
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi: 10.1186/gb-2009-10-3-r25.
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25. doi: 10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
17
-
-
79959829720
-
Widespread RNA and DNA sequence differences in the human transcriptome
-
Li M, Wang IX, Li Y, Bruzel A, Richards AL, Toung JM, Cheung VG. 2011. Widespread RNA and DNA sequence differences in the human transcriptome. Science 333: 53-58.
-
(2011)
Science
, vol.333
, pp. 53-58
-
-
Li, M.1
Wang, I.X.2
Li, Y.3
Bruzel, A.4
Richards, A.L.5
Toung, J.M.6
Cheung, V.G.7
-
18
-
-
84858328300
-
Comment on "Widespread RNA and DNA sequence differences in the human transcriptome."
-
doi: 10.1126/science.1210624
-
Lin W, Piskol R, Tan MH, Li JB. 2012. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome." Science 335: 1302. doi: 10.1126/science.1210624.
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Lin, W.1
Piskol, R.2
Tan, M.H.3
Li, J.B.4
-
19
-
-
3342969381
-
RNA editing of a miRNA precursor
-
DOI 10.1261/rna.7350304
-
Luciano DJ, Mirsky H, Vendetti NJ, Maas S. 2004. RNA editing of a miRNA precursor. RNA 10: 1174-1177. (Pubitemid 38989003)
-
(2004)
RNA
, vol.10
, Issue.8
, pp. 1174-1177
-
-
Luciano, D.J.1
Mirsky, H.2
Vendetti, N.J.3
Maas, S.4
-
21
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean CY, Bristor D, Hiller M, Clarke SL, Schaar BT, Lowe CB, Wenger AM, Bejerano G. 2010. GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol 28: 495-501.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
22
-
-
77950458649
-
Transcriptome genetics using second generation sequencing in a Caucasian population
-
Montgomery SB, Sammeth M, Gutierrez-Arcelus M, Larch RP, Ingle C, Nisbett J, Guigo R, Dermitzakis ET. 2010. Transcriptome genetics using second generation sequencing in a Caucasian population. Nature 464: 773-777.
-
(2010)
Nature
, vol.464
, pp. 773-777
-
-
Montgomery, S.B.1
Sammeth, M.2
Gutierrez-Arcelus, M.3
Larch, R.P.4
Ingle, C.5
Nisbett, J.6
Guigo, R.7
Dermitzakis, E.T.8
-
23
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628. (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
24
-
-
33845315229
-
Editor meets silencer: Crosstalk between RNA editing and RNA interference
-
DOI 10.1038/nrm2061, PII NRM2061
-
Nishikura K. 2006. Editor meets silencer: Crosstalk between RNA editing and RNA interference. Nat Rev Mol Cell Biol 7: 919-931. (Pubitemid 44871418)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.12
, pp. 919-931
-
-
Nishikura, K.1
-
25
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
Nishikura K. 2010. Functions and regulation of RNA editing by ADAR deaminases. Annu Rev Biochem 79: 321-349.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
26
-
-
0025943830
-
Substrate specificity of the dsRNA unwinding/modifying activity
-
Nishikura K, Yoo C, Kim U, Murray JM, Estes PA, Cash FE, Liebhaber SA. 1991. Substrate specificity of the dsRNA unwinding/modifying activity. EMBO J 10: 3523-3532. (Pubitemid 21905377)
-
(1991)
EMBO Journal
, vol.10
, Issue.11
, pp. 3523-3532
-
-
Nishikura, K.1
Yoo, C.2
Kim, U.3
Murray, J.M.4
Estes, P.A.5
Cash, F.E.6
Liebhaber, S.A.7
-
27
-
-
54049083387
-
Visualizing phylogenetic trees using TreeView
-
Page RD. 2002. Visualizing phylogenetic trees using TreeView. Curr Protoc Bioinformatics 6.2.1-6.2.15.
-
(2002)
Curr Protoc Bioinformatics
-
-
Page, R.D.1
-
28
-
-
35948957777
-
Altered adenosine-to-inosine RNA editing in human cancer
-
DOI 10.1101/gr.6493107
-
Paz N, Levanon EY, Amariglio N, Heimberger AB, Ram Z, Constantini S, Barbash ZS, Adamsky K, Safran M, Hirschberg A, et al. 2007. Altered adenosine-to-inosine RNA editing in human cancer. Genome Res 17: 1586-1595. (Pubitemid 350074854)
-
(2007)
Genome Research
, vol.17
, Issue.11
, pp. 1586-1595
-
-
Paz, N.1
Levanon, E.Y.2
Amariglio, N.3
Heimberger, A.B.4
Ram, Z.5
Constantini, S.6
Barbash, Z.S.7
Adamsky, K.8
Safran, M.9
Hirschberg, A.10
Krupsky, M.11
Ben-Dov, I.12
Cazacu, S.13
Mikkelsen, T.14
Brodie, C.15
Eisenberg, E.16
Rechavi, G.17
-
29
-
-
33344477023
-
ADAR2-dependent RNA editing of AMPA receptor subunit GluR2 determines vulnerability of neurons in forebrain ischemia
-
DOI 10.1016/j.neuron.2006.01.025, PII S0896627306000791
-
Peng PL, Zhong X, Tu W, Soundarapandian MM, Molner P, Zhu D, Lau L, Liu S, Liu F, Lu Y. 2006. ADARB1-dependent RNA editing of AMPA receptor subunit GluR2 determines vulnerability of neurons in forebrain ischemia. Neuron 49: 719-733. (Pubitemid 43290131)
-
(2006)
Neuron
, vol.49
, Issue.5
, pp. 719-733
-
-
Peng, P.L.1
Zhong, X.2
Tu, W.3
Soundarapandian, M.M.4
Molner, P.5
Zhu, D.6
Lau, L.7
Liu, S.8
Liu, F.9
Lu, Y.10
-
30
-
-
84863229628
-
Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
-
doi: 10.1038/nbt.2122
-
Peng Z, Cheng Y, Tan BC, Kang L, Tian Z, Zhu Y, Zhang W, Liang Y, Hu X, Tan X, et al. 2012. Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome. Nat Biotechnol. doi: 10.1038/nbt.2122.
-
(2012)
Nat Biotechnol
-
-
Peng, Z.1
Cheng, Y.2
Tan, B.C.3
Kang, L.4
Tian, Z.5
Zhu, Y.6
Zhang, W.7
Liang, Y.8
Hu, X.9
Tan, X.10
-
31
-
-
84863385039
-
Comment on "Widespread RNA and DNA sequence differences in the human transcriptome."
-
doi: 10.1126/science.1210484
-
Pickrell JK, Gilad Y, Pritchard JK. 2012. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome." Science 335: 1302. doi: 10.1126/science.1210484.
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Pickrell, J.K.1
Gilad, Y.2
Pritchard, J.K.3
-
32
-
-
0027967784
-
Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase
-
Polson AG, Bass BL. 1994. Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase. EMBO J 13: 5701-5711. (Pubitemid 24363038)
-
(1994)
EMBO Journal
, vol.13
, Issue.23
, pp. 5701-5711
-
-
Polson, A.G.1
Bass, B.L.2
-
33
-
-
26844440157
-
Regulating gene expression through RNA nuclear retention
-
DOI 10.1016/j.cell.2005.08.033, PII S0092867405008706
-
Prasanth KV, Prasanth SG, Xuan Z, Hearn S, Freier SM, Bennett CF, Zhang MQ, Spector DL. 2005. Regulating gene expression through RNA nuclear retention. Cell 123: 249-263. (Pubitemid 41457215)
-
(2005)
Cell
, vol.123
, Issue.2
, pp. 249-263
-
-
Prasanth, K.V.1
Prasanth, S.G.2
Xuan, Z.3
Hearn, S.4
Freier, S.M.5
Bennett, C.F.6
Zhang, M.Q.7
Spector, D.L.8
-
34
-
-
80053980948
-
Very few RNA and DNA sequence differences in the human transcriptome
-
doi: 10.1371/journal.pone.0025842
-
Schrider DR, Gout JF, Hahn MW. 2011. Very few RNA and DNA sequence differences in the human transcriptome. PLoS ONE 6: e25842. doi: 10.1371/journal.pone.0025842.
-
(2011)
PLoS ONE
, vol.6
-
-
Schrider, D.R.1
Gout, J.F.2
Hahn, M.W.3
-
35
-
-
0032077722
-
RNA editing of brain glutamate receptor channels: Mechanism and physiology
-
DOI 10.1016/S0165-0173(97)00062-3, PII S0165017397000623
-
Seeburg PH, Higuchi M, Sprengel R. 1998. RNA editing of brain glutamate receptor channels: Mechanism and physiology. Brain Res Brain Res Rev 26: 217-229. (Pubitemid 28318077)
-
(1998)
Brain Research Reviews
, vol.26
, Issue.2-3
, pp. 217-229
-
-
Seeburg, P.H.1
Higuchi, M.2
Sprengel, R.3
-
36
-
-
0035173378
-
DbSNP: The NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. 2001. dbSNP: The NCBI database of genetic variation. Nucleic Acids Res 29: 308-311. (Pubitemid 32054478)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.-H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.M.6
Sirotkin, K.7
-
37
-
-
18144401994
-
New antiviral pathway that mediates hepatitis C virus replicon interferon sensitivity through ADAR1
-
DOI 10.1128/JVI.79.10.6291-6298.2005
-
Taylor DR, Puig M, Darnell ME, Mihalik K, Feinstone SM. 2005. New antiviral pathway that mediates hepatitis C virus replicon interferon sensitivity through ADAR. J Virol 79: 6291-6298. (Pubitemid 40617233)
-
(2005)
Journal of Virology
, vol.79
, Issue.10
, pp. 6291-6298
-
-
Taylor, D.R.1
Puig, M.2
Darnell, M.E.R.3
Mihalik, K.4
Feinstone, S.M.5
-
38
-
-
0011823131
-
A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs
-
DOI 10.1073/pnas.86.8.2647
-
Wagner RW, Smith JE, Cooperman BS, Nishikura K. 1989. A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs. Proc Natl Acad Sci 86: 2647-2651. (Pubitemid 19112604)
-
(1989)
Proceedings of the National Academy of Sciences of the United States of America
, vol.86
, Issue.8
, pp. 2647-2651
-
-
Wagner, R.W.1
Smith, J.E.2
Cooperman, B.S.3
Nishikura, K.4
-
39
-
-
1042289736
-
Stress-induced Apoptosis Associated with Null Mutation of ADAR1 RNA Editing Deaminase Gene
-
DOI 10.1074/jbc.M310162200
-
Wang Q, Miyakoda M, Yang W, Khillan J, Stachura D, Weiss M, Nishikura K. 2004. Stress-induced apoptosis associated with null mutation of ADAR RNA editing deaminase gene. J Biol Chem 279: 4952-4961. (Pubitemid 38199091)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.6
, pp. 4952-4961
-
-
Wang, Q.1
Miyakoda, M.2
Yang, W.3
Khillan, J.4
Stachura, D.L.5
Weiss, M.J.6
Nishikura, K.7
-
40
-
-
13944265983
-
Vigilins bind to promiscuously A-to-I-edited RNAs and are involved in the formation of heterochromatin
-
DOI 10.1016/j.cub.2005.01.046
-
Wang Q, Zhang Z, Blackwell K, Carmichael GG. 2005. Vigilins bind to promiscuously A-to-I-edited RNAs and are involved in the formation of heterochromatin. Curr Biol 15: 384-391. (Pubitemid 40263374)
-
(2005)
Current Biology
, vol.15
, Issue.4
, pp. 384-391
-
-
Wang, Q.1
Zhang, Z.2
Blackwell, K.3
Carmichael, G.G.4
-
41
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
doi: 10.1093/nar/gkq603
-
Wang K, Li M, Hakonarson H. 2010. ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38: e164. doi: 10.1093/nar/gkq603.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
42
-
-
0026632417
-
Editing on the genomic RNA of human hepatitis delta virus
-
Zheng H, Fu TB, Lazinski D, Taylor J. 1992. Editing on the genomic RNA of human hepatitis delta virus. J Virol 66: 4693-4697.
-
(1992)
J Virol
, vol.66
, pp. 4693-4697
-
-
Zheng, H.1
Fu, T.B.2
Lazinski, D.3
Taylor, J.4
|