Counting absolute numbers of molecules using unique molecular identifiers

Nature Methods

Volumn 9, Issue 1, 2012, Pages 72-74

  Kivioja, Teemu ^a,b,c   Vähärautio, Anna ^a,c   Karlsson, Kasper ^c   Bonke, Martin ^a   Enge, Martin ^c   Linnarsson, Sten ^c   Taipale, Jussi ^c  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF HELSINKI   (Finland)

^c KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MESSENGER RNA; RNA;

ACCURACY; ANIMAL EXPERIMENT; ARTICLE; CHROMATIN IMMUNOPRECIPITATION; DROSOPHILA MELANOGASTER; FEMALE; GENETIC PROCEDURES; GENOME; HUMAN; KARYOTYPING; MALE; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROCESS CONTROL; RNA SEQUENCE; UNIQUE MOLECULAR IDENTIFIER;

ANIMALS; CHROMATIN IMMUNOPRECIPITATION; DOWN SYNDROME; DROSOPHILA MELANOGASTER; FEMALE; GENE LIBRARY; GENOMICS; HUMANS; KARYOTYPING; MALE; RNA, MESSENGER; SEQUENCE ANALYSIS, RNA;

DROSOPHILA MELANOGASTER;

EID: 84856484968     PISSN: 15487091     EISSN: 15491676     Source Type: Journal    
DOI: 10.1038/nmeth.1778     Document Type: Article

References (22)

1. Ozsolak, F. et al. Nat. Methods 7, 619-621 (2010).
2. Lipson, D. et al. Nat. Biotechnol. 27, 652-658 (2009).
3. Ozsolak, F. et al. Nature 461, 814-818 (2009).
4. Vogelstein, B. & Kinzler, K.W. Proc. Natl. Acad. Sci. USA 96, 9236-9241 (1999).
5. Macevicz, S.C. US patent application 11/125,043 (2005).
6. Hug, H. & Schuler, R. J. Theor. Biol. 221, 615-624 (2003).
7. Konig, J. et al. Nat. Struct. Mol. Biol. 17, 909-915 (2010).
8. Wang, Z. et al. PLoS Biol. 8, e1000530 (2010).
9. Fu, G.K., Hu, J., Wang, P.H. & Fodor, S.P. Proc. Natl. Acad. Sci. USA 108, 9026-9031 (2011).
10. Kinde, I., Wu, J., Papadopoulos, N., Kinzler, K.W. & Vogelstein, B. Proc. Natl. Acad. Sci. USA 108, 9530-9535 (2011).
11. Casbon, J.A., Osborne, R.J., Brenner, S. & Lichtenstein, C.P. Nucleic Acids Res. 39, e81 (2011).
12. Chiu, R.W. et al. Proc. Natl. Acad. Sci. USA 105, 20458-20463 (2008).
13. Fan, H.C., Blumenfeld, Y.J., Chitkara, U., Hudgins, L. & Quake, S.R. Proc. Natl. Acad. Sci. USA 105, 16266-16271 (2008).
14. Anders, S. & Huber, W. Genome Biol. 11, R106 (2010).
15. Benita, Y., Oosting, R.S., Lok, M.C., Wise, M.J. & Humphery-Smith, I. Nucleic Acids Res. 31, e99 (2003).
16. Linnarsson, S. Exp. Cell Res. 316, 1339-1343 (2010).
17. Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Genome Biol. 10, R25 (2009).
18. Zhu, Y.Y., Machleder, E.M., Chenchik, A., Li, R. & Siebert, P.D. Biotechniques 30, 892-897 (2001).
19. Cloonan, N. et al. Nat. Methods 5, 613-619 (2008).
20. Levin, J.Z. et al. Nat. Methods 7, 709-715 (2010).
21. Stasinopoulos, D.M. & Rigby, R.A. J. Stat. Softw. 23, 1-46 (2007).
22. Li, H. & Durbin, R. Bioinformatics 25, 1754-1760 (2009).