메뉴 건너뛰기




Volumn 8, Issue , 2014, Pages 109-125

High-throughput methods redefine the rumen microbiome and its relationship with nutrition and metabolism

Author keywords

Cattle; Metabolism; Microbiome; Nutrition; Rumen

Indexed keywords

RNA 16S;

EID: 84902128831     PISSN: None     EISSN: 11779322     Source Type: Journal    
DOI: 10.4137/bbi.s15389     Document Type: Review
Times cited : (159)

References (120)
  • 1
    • 49649106060 scopus 로고    scopus 로고
    • Genomics of cellulosic biofuels
    • Rubin EM. Genomics of cellulosic biofuels. Nature. 2008;454(7206):841-5.
    • (2008) Nature. , vol.454 , Issue.7206 , pp. 841-845
    • Rubin, E.M.1
  • 2
    • 79251587455 scopus 로고    scopus 로고
    • Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
    • Hess M, Sczyrba A, Egan R, et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science. 2011;331(6016):463-7.
    • (2011) Science. , vol.331 , Issue.6016 , pp. 463-467
    • Hess, M.1    Sczyrba, A.2    Egan, R.3
  • 4
    • 0026950708 scopus 로고
    • A net carbohydrate and protein system for evaluating cattle diets: I. Ruminal fermentation
    • Russell JB, O'Connor JD, Fox DG, Van Soest PJ, Sniffen CJ. A net carbohydrate and protein system for evaluating cattle diets: I. Ruminal fermentation. J. Anim. Sci. 1992;70(11):3551-61.
    • (1992) J. Anim. Sci. , vol.70 , Issue.11 , pp. 3551-3561
    • Russell, J.B.1    O'Connor, J.D.2    Fox, D.G.3    Van Soest, P.J.4    Sniffen, C.J.5
  • 5
    • 0025482614 scopus 로고
    • Intestinal absorption of protein hydrolysis products: A review
    • Webb KE. Intestinal absorption of protein hydrolysis products: a review. J Anim Sci. 1990;68(9):3011-22.
    • (1990) J Anim Sci. , vol.68 , Issue.9 , pp. 3011-3022
    • Webb, K.E.1
  • 6
    • 0025321505 scopus 로고
    • Energy contributions of volatile fatty acids from the gastrointestinal tract in various species
    • Bergman EN. Energy contributions of volatile fatty acids from the gastrointestinal tract in various species. Physiol Rev. 1990;70(2):567-90.
    • (1990) Physiol Rev. , vol.70 , Issue.2 , pp. 567-590
    • Bergman, E.N.1
  • 7
    • 84874628087 scopus 로고    scopus 로고
    • Methylotrophic methanogenic. Thermoplasmata implicated in reduced methane emissions from bovine rumen
    • Poulsen M, Schwab C, Jensen BB, et al. Methylotrophic methanogenic. Thermoplasmata implicated in reduced methane emissions from bovine rumen. Nat Commun. 2013;4:1428.
    • (2013) Nat Commun. , vol.4 , pp. 1428
    • Poulsen, M.1    Schwab, C.2    Jensen, B.B.3
  • 9
    • 84882647373 scopus 로고    scopus 로고
    • Board-invited review: Rumen microbiology: Leading the way in microbial ecology
    • Krause DO, Nagaraja TG, Wright ADG, Callaway TR. Board-invited review: rumen microbiology: leading the way in microbial ecology. J Anim Sci. 2013;91(1):331-41.
    • (2013) J Anim Sci. , vol.91 , Issue.1 , pp. 331-341
    • Krause, D.O.1    Nagaraja, T.G.2    Wright, A.D.G.3    Callaway, T.R.4
  • 10
    • 0000154270 scopus 로고
    • Regulation of lactate production in Streptococcus bovis: A spiraling effect that contributes to rumen acidosis
    • Russell JB, Hino T. Regulation of lactate production in Streptococcus bovis: a spiraling effect that contributes to rumen acidosis. J Dairy Sci. 1985;68(7):1712-21.
    • (1985) J Dairy Sci. , vol.68 , Issue.7 , pp. 1712-1721
    • Russell, J.B.1    Hino, T.2
  • 11
    • 0019776566 scopus 로고
    • Role of Megasphaera elsdenii in the fermentation of DL-[2-13C]lactate in the rumen of dairy cattle
    • Counotte GHM, Prins RA, Janssen RHAM, deBie MJA. Role of Megasphaera elsdenii in the fermentation of DL-[2-13C]lactate in the rumen of dairy cattle. Appl Environ Microbiol. 1981;42(4):649-55.
    • (1981) Appl Environ Microbiol. , vol.42 , Issue.4 , pp. 649-655
    • Counotte, G.H.M.1    Prins, R.A.2    Janssen, R.H.A.M.3    deBie, M.J.A.4
  • 12
    • 62649107929 scopus 로고    scopus 로고
    • Fibrolytic rumen bacteria: Their ecology and functions
    • Koike S, Kobayashi Y. Fibrolytic rumen bacteria: their ecology and functions. Asian Austral J Anim Sci. 2009;22:131-8.
    • (2009) Asian Austral J Anim Sci. , vol.22 , pp. 131-138
    • Koike, S.1    Kobayashi, Y.2
  • 13
    • 0032805304 scopus 로고    scopus 로고
    • 16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: Design of a signature probe and its application in adult sheep
    • Krause DO, Dalrymple BP, Smith WJ, Mackie RI, McSweeney CS. 16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep. Microbiology. 1999;145(7):1797-807.
    • (1999) Microbiology. , vol.145 , Issue.7 , pp. 1797-1807
    • Krause, D.O.1    Dalrymple, B.P.2    Smith, W.J.3    McKie, R.I.4    McSweeney, C.S.5
  • 14
    • 34247620908 scopus 로고    scopus 로고
    • Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR
    • Stevenson D, Weimer P. Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR. Appl Microbiol Biotechnol. 2007;75(1):165-74.
    • (2007) Appl Microbiol Biotechnol. , vol.75 , Issue.1 , pp. 165-174
    • Stevenson, D.1    Weimer, P.2
  • 15
    • 84893848394 scopus 로고    scopus 로고
    • Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities
    • Henderson G, Cox F, Kittelmann S, et al. Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities. PLoS One. 2013;8(9):e74787.
    • (2013) PLoS One. , vol.8 , Issue.9
    • Henderson, G.1    Cox, F.2    Kittelmann, S.3
  • 17
    • 84862631902 scopus 로고    scopus 로고
    • Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
    • Soergel DAW, Dey N, Knight R, Brenner SE. Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences. ISME J. 2012;6(7):1440-4.
    • (2012) ISME J. , vol.6 , Issue.7 , pp. 1440-1444
    • Soergel, D.A.W.1    Dey, N.2    Knight, R.3    Brenner, S.E.4
  • 18
    • 68549130740 scopus 로고    scopus 로고
    • Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys
    • Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol. 2009;75(16):5227-36.
    • (2009) Appl Environ Microbiol. , vol.75 , Issue.16 , pp. 5227-5236
    • Youssef, N.1    Sheik, C.S.2    Krumholz, L.R.3    Najar, F.Z.4    Roe, B.A.5    Elshahed, M.S.6
  • 19
    • 84888884169 scopus 로고    scopus 로고
    • High throughput sequencing methods and analysis for microbiome research
    • Di Bella JM, Bao Y, Gloor GB, Burton JP, Reid G. High throughput sequencing methods and analysis for microbiome research. J Microbiol Methods. 2013;95(3):401-14.
    • (2013) J Microbiol Methods. , vol.95 , Issue.3 , pp. 401-414
    • Di Bella, J.M.1    Bao, Y.2    Gloor, G.B.3    Burton, J.P.4    Reid, G.5
  • 20
    • 36148937913 scopus 로고    scopus 로고
    • A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
    • Parameswaran P, Jalili R, Tao L, et al. A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Res. 2007;35(19):e130.
    • (2007) Nucleic Acids Res. , vol.35 , Issue.19
    • Parameswaran, P.1    Jalili, R.2    Tao, L.3
  • 21
    • 83355173006 scopus 로고    scopus 로고
    • Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
    • Schloss PD, Gevers D, Westcott SL. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One. 2011;6(12):e27310.
    • (2011) PLoS One. , vol.6 , Issue.12
    • Schloss, P.D.1    Gevers, D.2    Westcott, S.L.3
  • 25
    • 84873684861 scopus 로고    scopus 로고
    • Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities
    • Kittelmann S, Seedorf H, Walters WA, et al. Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities. PLoS One. 2013;8(2):e47879.
    • (2013) PLoS One. , vol.8 , Issue.2
    • Kittelmann, S.1    Seedorf, H.2    Walters, W.A.3
  • 26
    • 84868708445 scopus 로고    scopus 로고
    • Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen
    • Fouts DE, Szpakowski S, Purushe J, et al. Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen. PLoS One. 2012;7(11):e48289.
    • (2012) PLoS One. , vol.7 , Issue.11
    • Fouts, D.E.1    Szpakowski, S.2    Purushe, J.3
  • 27
    • 0013955651 scopus 로고
    • Motor functions of the ruminant forestomach
    • Sellers AF, Stevens CE. Motor functions of the ruminant forestomach. Physiol Rev. 1966;46(4):634-61.
    • (1966) Physiol Rev. , vol.46 , Issue.4 , pp. 634-661
    • Sellers, A.F.1    Stevens, C.E.2
  • 29
    • 0035843960 scopus 로고    scopus 로고
    • Factors that alter rumen microbial ecology
    • Russell JB, Rychlik JL. Factors that alter rumen microbial ecology. Science. 2001;292(5519):1119-22.
    • (2001) Science. , vol.292 , Issue.5519 , pp. 1119-1122
    • Russell, J.B.1    Rychlik, J.L.2
  • 30
    • 78649293630 scopus 로고    scopus 로고
    • Host specificity of the ruminal bacterial community in the dairy cow following near-total exchange of ruminal contents
    • Weimer PJ, Stevenson DM, Mantovani HC, Man SLC. Host specificity of the ruminal bacterial community in the dairy cow following near-total exchange of ruminal contents. J Dairy Sci. 2010;93(12):5902-12.
    • (2010) J Dairy Sci. , vol.93 , Issue.12 , pp. 5902-5912
    • Weimer, P.J.1    Stevenson, D.M.2    Mantovani, H.C.3    Man, S.L.C.4
  • 31
    • 77951765065 scopus 로고    scopus 로고
    • ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle
    • Welkie DG, Stevenson DM, Weimer PJ. ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle. Anaerobe. 2010;16(2):94-100.
    • (2010) Anaerobe. , vol.16 , Issue.2 , pp. 94-100
    • Welkie, D.G.1    Stevenson, D.M.2    Weimer, P.J.3
  • 33
    • 72849133578 scopus 로고    scopus 로고
    • Effects of sampling location and time, and host animal on assessment of bacterial diversity and fermentation parameters in the bovine rumen
    • Li M, Penner GB, Hernandez-Sanabria E, Oba M, Guan LL. Effects of sampling location and time, and host animal on assessment of bacterial diversity and fermentation parameters in the bovine rumen. J Appl Microbiol. 2009;107(6):1924-34.
    • (2009) J Appl Microbiol. , vol.107 , Issue.6 , pp. 1924-1934
    • Li, M.1    Penner, G.B.2    Hernandez-Sanabria, E.3    Oba, M.4    Guan, L.L.5
  • 34
    • 67650547897 scopus 로고    scopus 로고
    • Technical note: Bacterial diversity and fermentation end products in rumen fluid samples collected via oral lavage or rumen cannula
    • Lodge-Ivey SL, Browne-Silva J, Horvath MB. Technical note: bacterial diversity and fermentation end products in rumen fluid samples collected via oral lavage or rumen cannula. J Anim Sci. 2009;87(7):2333-7.
    • (2009) J Anim Sci. , vol.87 , Issue.7 , pp. 2333-2337
    • Lodge-Ivey, S.L.1    Browne-Silva, J.2    Horvath, M.B.3
  • 35
    • 84880617851 scopus 로고    scopus 로고
    • Short communication: Comparison of pH, volatile fatty acids, and microbiome of rumen samples from preweaned calves obtained via cannula or stomach tube
    • Terré M, Castells L, Fàbregas F, Bach A. Short communication: Comparison of pH, volatile fatty acids, and microbiome of rumen samples from preweaned calves obtained via cannula or stomach tube. J Dairy Sci. 2013;96(8):5290-4.
    • (2013) J Dairy Sci. , vol.96 , Issue.8 , pp. 5290-5294
    • Terré, M.1    Castells, L.2    Fàbregas, F.3    Bach, A.4
  • 36
    • 84882847543 scopus 로고    scopus 로고
    • Analysis of rumen microbial populations in lactating dairy cattle fed diets varying in carbohydrate profiles and Saccharomyces cerevisiae fermentation product
    • Mullins CR, Mamedova LK, Carpenter AJ, et al. Analysis of rumen microbial populations in lactating dairy cattle fed diets varying in carbohydrate profiles and Saccharomyces cerevisiae fermentation product. J Dairy Sci. 2013;96(9):5872-81.
    • (2013) J Dairy Sci. , vol.96 , Issue.9 , pp. 5872-5881
    • Mullins, C.R.1    Mamedova, L.K.2    Carpenter, A.J.3
  • 37
    • 15944371548 scopus 로고    scopus 로고
    • Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing
    • Larue R, Yu Z, Parisi VA, Egan AR, Morrison M. Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environ Microbiol. 2005;7(4):530-43.
    • (2005) Environ Microbiol. , vol.7 , Issue.4 , pp. 530-543
    • Larue, R.1    Yu, Z.2    Parisi, V.A.3    Egan, A.R.4    Morrison, M.5
  • 38
    • 77952497488 scopus 로고    scopus 로고
    • Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets
    • Pitta DW, Pinchak E, Dowd SE, et al. Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets. Microb Ecol. 2010;59(3):511-22.
    • (2010) Microb Ecol. , vol.59 , Issue.3 , pp. 511-522
    • Pitta, D.W.1    Pinchak, E.2    Dowd, S.E.3
  • 39
    • 60549114321 scopus 로고    scopus 로고
    • Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
    • Brulc JM, Antonopoulos DA, Miller ME, et al. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci USA. 2009;106(6):1948-53.
    • (2009) Proc Natl Acad Sci USA. , vol.106 , Issue.6 , pp. 1948-1953
    • Brulc, J.M.1    Antonopoulos, D.A.2    Miller, M.E.3
  • 40
    • 84860838700 scopus 로고    scopus 로고
    • Characterization of rumen bacterial diversity and fermentation parameters in concentrate fed cattle with and without forage
    • Petri RM, Forster RJ, Yang W, McKinnon JJ, McAllister TA. Characterization of rumen bacterial diversity and fermentation parameters in concentrate fed cattle with and without forage. J Appl Microbiol. 2012;112(6):1152-62.
    • (2012) J Appl Microbiol. , vol.112 , Issue.6 , pp. 1152-1162
    • Petri, R.M.1    Forster, R.J.2    Yang, W.3    McKinnon, J.J.4    McAllister, T.A.5
  • 42
    • 79951709776 scopus 로고    scopus 로고
    • Invited review: Effects of milk ration on solid feed intake, weaning, and performance in dairy heifers
    • Khan MA, Weary DM, von Keyserlingk MAG. Invited review: effects of milk ration on solid feed intake, weaning, and performance in dairy heifers. J Dairy Sci. 2011;94(3):1071-81.
    • (2011) J Dairy Sci. , vol.94 , Issue.3 , pp. 1071-1081
    • Khan, M.A.1    Weary, D.M.2    von Keyserlingk, M.A.G.3
  • 43
    • 84055192750 scopus 로고    scopus 로고
    • Effect of different forage sources on performance and feeding behavior of Holstein calves
    • Castells L, Bach A, Araujo G, Montoro C, Terré M. Effect of different forage sources on performance and feeding behavior of Holstein calves. J Dairy Sci. 2012;95(1):286-93.
    • (2012) J Dairy Sci. , vol.95 , Issue.1 , pp. 286-293
    • Castells, L.1    Bach, A.2    Araujo, G.3    Montoro, C.4    Terré, M.5
  • 44
    • 3142577528 scopus 로고    scopus 로고
    • The effects of forage provision and group size on the behavior of calves
    • Phillips C. The effects of forage provision and group size on the behavior of calves. J Dairy Sci. 2004;87(5):1380-8.
    • (2004) J Dairy Sci. , vol.87 , Issue.5 , pp. 1380-1388
    • Phillips, C.1
  • 45
    • 84878276427 scopus 로고    scopus 로고
    • Exploring the bovine rumen bacterial community from birth to adulthood
    • Jami E, Israel A, Kotser A, Mizrahi I. Exploring the bovine rumen bacterial community from birth to adulthood. The ISME journal. 2013;7(6):1069-79.
    • (2013) The ISME journal. , vol.7 , Issue.6 , pp. 1069-1079
    • Jami, E.1    Israel, A.2    Kotser, A.3    Mizrahi, I.4
  • 46
    • 84855275498 scopus 로고    scopus 로고
    • Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools
    • Li RW, Connor EE, Li C, Baldwin VIRL, Sparks ME. Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools. Environ Microbiol. 2012;14(1):129-39.
    • (2012) Environ Microbiol. , vol.14 , Issue.1 , pp. 129-139
    • Li, R.W.1    Connor, E.E.2    Li, C.3    Baldwin, V.I.R.L.4    Sparks, M.E.5
  • 47
    • 84858185944 scopus 로고    scopus 로고
    • Composition and similarity of bovine rumen microbiota across individual animals
    • Jami E, Mizrahi I. Composition and similarity of bovine rumen microbiota across individual animals. PLoS One. 2012;7(3):e33306.
    • (2012) PLoS One. , vol.7 , Issue.3
    • Jami, E.1    Mizrahi, I.2
  • 48
    • 0033783484 scopus 로고    scopus 로고
    • Rumen bacterial community transition during adaptation to high-grain diet
    • Chen Y, Penner GB, Li M, Oba M, Guan LL. Rumen bacterial community transition during adaptation to high-grain diet. Anaerobe. 2000;6(5):273-84.
    • (2000) Anaerobe. , vol.6 , Issue.5 , pp. 273-284
    • Chen, Y.1    Penner, G.B.2    Li, M.3    Oba, M.4    Guan, L.L.5
  • 49
  • 50
    • 33947257593 scopus 로고    scopus 로고
    • Designing supplements for stocker cattle grazing wheat pasture
    • Horn GW, Beck PA, Andrae JG, Paisley SI. Designing supplements for stocker cattle grazing wheat pasture. J Anim Sci. 2005;83(13 sul):E69-E78.
    • (2005) J Anim Sci. , vol.83 , Issue.13 SUPPL.
    • Horn, G.W.1    Beck, P.A.2    Andrae, J.G.3    Paisley, S.I.4
  • 51
    • 78649706430 scopus 로고    scopus 로고
    • Rumen microbial population dynamics during adaptation to a high-grain diet
    • Fernando SC, Purvis HT 2nd, Najar FZ, et al. Rumen microbial population dynamics during adaptation to a high-grain diet. Appl Environ Microbiol. 2010;76(22):7482-90.
    • (2010) Appl Environ Microbiol. , vol.76 , Issue.22 , pp. 7482-7490
    • Fernando, S.C.1    Purvis II, H.T.2    Najar, F.Z.3
  • 52
    • 0019412507 scopus 로고
    • Rumen bacterial competition in continuous culture: Streptococcus bovis versus Megasphaera elsdenii
    • Russell JB, Cotta MA, Dombrowski DB. Rumen bacterial competition in continuous culture: Streptococcus bovis versus Megasphaera elsdenii. Appl Environ Microbiol. 1981;41(6):1394-9.
    • (1981) Appl Environ Microbiol. , vol.41 , Issue.6 , pp. 1394-1399
    • Russell, J.B.1    Cotta, M.A.2    Dombrowski, D.B.3
  • 54
    • 0017008986 scopus 로고
    • Influence of acidosis on rumen function
    • Slyter LL. Influence of acidosis on rumen function. J Anim Sci. 1976;43(4):910-29.
    • (1976) J Anim Sci. , vol.43 , Issue.4 , pp. 910-929
    • Slyter, L.L.1
  • 55
    • 0035849668 scopus 로고    scopus 로고
    • Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens
    • Tajima K, Nagamine T, Matsui H, Nakamura M, Aminov RI. Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens. FEMS Microbiol Lett. 2001;200(1):67-72.
    • (2001) FEMS Microbiol Lett. , vol.200 , Issue.1 , pp. 67-72
    • Tajima, K.1    Nagamine, T.2    Matsui, H.3    Nakamura, M.4    Aminov, R.I.5
  • 56
    • 0017820404 scopus 로고
    • Substrate preferences in rumen bacteria: Evidence of catabolite regulatory mechanisms
    • Russell JB, Baldwin RL. Substrate preferences in rumen bacteria: evidence of catabolite regulatory mechanisms. Appl Environ Microbiol. 1978;36(2):319-329.
    • (1978) Appl Environ Microbiol. , vol.36 , Issue.2 , pp. 319-329
    • Russell, J.B.1    Baldwin, R.L.2
  • 57
    • 84878565534 scopus 로고    scopus 로고
    • Changes in the rumen epimural bacterial diversity of beef cattle as affected by diet and induced ruminal acidosis
    • Petri RM, Schwaiger T, Penner GB, et al. Changes in the rumen epimural bacterial diversity of beef cattle as affected by diet and induced ruminal acidosis. Appl Environ Microbiol. 2013;79(12):3744-55.
    • (2013) Appl Environ Microbiol. , vol.79 , Issue.12 , pp. 3744-3755
    • Petri, R.M.1    Schwaiger, T.2    Penner, G.B.3
  • 58
    • 77649185557 scopus 로고    scopus 로고
    • Desulfovibrio oceani subsp. oceani sp. nov., subsp. nov. and Desulfovibrio oceani subsp. galateae subsp. nov., novel sulfate-reducing bacteria isolated from the oxygen minimum zone off the coast of Peru
    • Finster K, Kjeldsen K. Desulfovibrio oceani subsp. oceani sp. nov., subsp. nov. and Desulfovibrio oceani subsp. galateae subsp. nov., novel sulfate-reducing bacteria isolated from the oxygen minimum zone off the coast of Peru. Antonie Van Leeuwenhoek. 2010;97(3):221-9.
    • (2010) Antonie Van Leeuwenhoek. , vol.97 , Issue.3 , pp. 221-229
    • Finster, K.1    Kjeldsen, K.2
  • 59
    • 84887125871 scopus 로고    scopus 로고
    • Isolation and characterization of Desulfocurvus thunnarius sp. nov., a sulfate-reducing bacterium isolated from an anaerobic sequencing batch reactor treating cooking wastewater
    • Hamdi O, Ben HaniaW, Postec A, et al. Isolation and characterization of Desulfocurvus thunnarius sp. nov., a sulfate-reducing bacterium isolated from an anaerobic sequencing batch reactor treating cooking wastewater. Int J Syst Evol Microbiol. 2013;63(pt 11):4237-42.
    • (2013) Int J Syst Evol Microbiol. , vol.63 , Issue.PART 11 , pp. 4237-4242
    • Hamdi, O.1    Ben Hania, W.2    Postec, A.3
  • 60
    • 34547742581 scopus 로고    scopus 로고
    • PCR-DGGE analysis reveals a distinct diversity in the bacterial population attached to the rumen epithelium
    • Sadet S, Martin C, Meunier B, Morgavi D. PCR-DGGE analysis reveals a distinct diversity in the bacterial population attached to the rumen epithelium. Animal. 2007;1(07):939-44.
    • (2007) Animal. , vol.1 , Issue.7 , pp. 939-944
    • Sadet, S.1    Martin, C.2    Meunier, B.3    Morgavi, D.4
  • 61
    • 0033227135 scopus 로고    scopus 로고
    • Biology of dairy cows during the transition period: The final frontier?
    • Drackley JK. Biology of dairy cows during the transition period: the final frontier? J Dairy Sci. 1999;82(11):2259-73.
    • (1999) J Dairy Sci. , vol.82 , Issue.11 , pp. 2259-2273
    • Drackley, J.K.1
  • 62
    • 84861162373 scopus 로고    scopus 로고
    • Correlation between composition of the bacterial community and concentration of volatile fatty acids in the rumen during the transition period and ketosis in dairy cows
    • Wang X, Li X, Zhao C, et al. Correlation between composition of the bacterial community and concentration of volatile fatty acids in the rumen during the transition period and ketosis in dairy cows. Appl Environ Microbiol. 2012;78(7):2386-92.
    • (2012) Appl Environ Microbiol. , vol.78 , Issue.7 , pp. 2386-2392
    • Wang, X.1    Li, X.2    Zhao, C.3
  • 63
    • 84867745314 scopus 로고    scopus 로고
    • Individual animal variability in ruminal bacterial communities and ruminal acidosis in primiparous Holstein cows during the periparturient period
    • Mohammed R, Stevenson D, Weimer P, Penner G, Beauchemin K. Individual animal variability in ruminal bacterial communities and ruminal acidosis in primiparous Holstein cows during the periparturient period. J Dairy Sci. 2012;95(11):6716-30.
    • (2012) J Dairy Sci. , vol.95 , Issue.11 , pp. 6716-6730
    • Mohammed, R.1    Stevenson, D.2    Weimer, P.3    Penner, G.4    Beauchemin, K.5
  • 64
    • 65549120041 scopus 로고    scopus 로고
    • Physiological basis for residual feed intake
    • Herd R, Arthur P. Physiological basis for residual feed intake. J Anim Sci. 2009;87(14 suppl):E64-E71.
    • (2009) J Anim Sci. , vol.87 , Issue.14 SUPPL.
    • Herd, R.1    Arthur, P.2
  • 65
    • 52649097569 scopus 로고    scopus 로고
    • Linkage of microbial ecology to phenotype: Correlation of rumen microbial ecology to cattle's feed efficiency
    • Guan LL, Nkrumah JD, Basarab JA, Moore SS. Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency. FEMS Microbiol Lett. 2008;288(1):85-91.
    • (2008) FEMS Microbiol Lett. , vol.288 , Issue.1 , pp. 85-91
    • Guan, L.L.1    Nkrumah, J.D.2    Basarab, J.A.3    Moore, S.S.4
  • 67
    • 84863767301 scopus 로고    scopus 로고
    • Effect of phenotypic residual feed intake and dietary forage content on the rumen microbial community of beef cattle
    • Carberry CA, Kenny DA, Han S, McCabe MS, Waters SM. Effect of phenotypic residual feed intake and dietary forage content on the rumen microbial community of beef cattle. Appl Environ Microbiol. 2012;78(14):4949-58.
    • (2012) Appl Environ Microbiol. , vol.78 , Issue.14 , pp. 4949-4958
    • Carberry, C.A.1    Kenny, D.A.2    Han, S.3    McCabe, M.S.4    Waters, S.M.5
  • 68
    • 84898670650 scopus 로고    scopus 로고
    • Relationship between the rumen microbiome and residual feed intake-efficiency of Brahman bulls stocked on bermudagrass pastures
    • McCann JC, Wiley LM, Forbes TD, Rouquette FM Jr., Tedeschi LO. Relationship between the rumen microbiome and residual feed intake-efficiency of Brahman bulls stocked on bermudagrass pastures. PLoS One. 2014;9(3):e91864.
    • (2014) PLoS One. , vol.9 , Issue.3
    • McCann, J.C.1    Wiley, L.M.2    Forbes, T.D.3    Rouquette Jr., F.M.4    Tedeschi, L.O.5
  • 69
    • 84865345043 scopus 로고    scopus 로고
    • Nitrogen metabolism and rumen microbial enumeration in lactating cows with divergent residual feed intake fed high-digestibility pasture
    • Rius AG, Kittelmann S, Macdonald KA, Waghorn GC, Janssen PH, Sikkema E. Nitrogen metabolism and rumen microbial enumeration in lactating cows with divergent residual feed intake fed high-digestibility pasture. J Dairy Sci. 2012;95(9):5024-34.
    • (2012) J Dairy Sci. , vol.95 , Issue.9 , pp. 5024-5034
    • Rius, A.G.1    Kittelmann, S.2    McDonald, K.A.3    Waghorn, G.C.4    Janssen, P.H.5    Sikkema, E.6
  • 70
    • 78049268465 scopus 로고    scopus 로고
    • Correlation of Particular Bacterial PCR-Denaturing Gradient Gel Electrophoresis Patterns with Bovine Ruminal Fermentation Parameters and Feed Efficiency Traits
    • Hernandez-Sanabria E, Guan LL, Goonewardene LA, et al. Correlation of Particular Bacterial PCR-Denaturing Gradient Gel Electrophoresis Patterns with Bovine Ruminal Fermentation Parameters and Feed Efficiency Traits. Appl. Environ. Microbiol. 2010;76(19):6338-50.
    • (2010) Appl. Environ. Microbiol. , vol.76 , Issue.19 , pp. 6338-6350
    • Hernandez-Sanabria, E.1    Guan, L.L.2    Goonewardene, L.A.3
  • 71
    • 80053016072 scopus 로고    scopus 로고
    • Grass silage intake, rumen and blood variables, ultrasonic and body measurements, feeding behavior, and activity in pregnant beef heifers differing in phenotypic residual feed intake
    • Lawrence P, Kenny D, Earley B, Crews D, McGee M. Grass silage intake, rumen and blood variables, ultrasonic and body measurements, feeding behavior, and activity in pregnant beef heifers differing in phenotypic residual feed intake. J Anim Sci. 2011;89(10):3248-61.
    • (2011) J Anim Sci. , vol.89 , Issue.10 , pp. 3248-3261
    • Lawrence, P.1    Kenny, D.2    Earley, B.3    Crews, D.4    McGee, M.5
  • 72
    • 78649670032 scopus 로고    scopus 로고
    • Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing
    • Callaway TR, Dowd SE, Edrington TS, et al. Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing. J Anim Sci. 2010;88(12):3977-83.
    • (2010) J Anim Sci. , vol.88 , Issue.12 , pp. 3977-3983
    • Callaway, T.R.1    Dowd, S.E.2    Edrington, T.S.3
  • 73
    • 0029022532 scopus 로고
    • Identification of proteolytic rumen bacteria isolated from New Zealand cattle
    • Attwood GT, Reilly K. Identification of proteolytic rumen bacteria isolated from New Zealand cattle. J Appl Microbiol. 1995;79(1):22-9.
    • (1995) J Appl Microbiol. , vol.79 , Issue.1 , pp. 22-29
    • Attwood, G.T.1    Reilly, K.2
  • 74
    • 0036490051 scopus 로고    scopus 로고
    • Design and use of 16S ribosomal DNA-directed primers in competitive PCRs to enumerate proteolytic bacteria in the rumen
    • Reilly K, Carruthers VR, Attwood GT. Design and use of 16S ribosomal DNA-directed primers in competitive PCRs to enumerate proteolytic bacteria in the rumen. Microb Ecol. 2002;43(2):259-70.
    • (2002) Microb Ecol. , vol.43 , Issue.2 , pp. 259-270
    • Reilly, K.1    Carruthers, V.R.2    Attwood, G.T.3
  • 75
    • 78649349260 scopus 로고    scopus 로고
    • Effects of feeding increasing levels of wet corn gluten feed on production and ruminal fermentation in lactating dairy cows
    • Mullins CR, Grigsby KN, Anderson DE, Titgemeyer EC, Bradford BJ. Effects of feeding increasing levels of wet corn gluten feed on production and ruminal fermentation in lactating dairy cows. J Dairy Sci. 2010;93(11):5329-37.
    • (2010) J Dairy Sci. , vol.93 , Issue.11 , pp. 5329-5337
    • Mullins, C.R.1    Grigsby, K.N.2    Anderson, D.E.3    Titgemeyer, E.C.4    Bradford, B.J.5
  • 77
    • 0026612052 scopus 로고
    • Vitamin B12-dependent propionate production by the ruminal bacterium Prevotella ruminicola 23
    • Strobel HJ. Vitamin B12-dependent propionate production by the ruminal bacterium Prevotella ruminicola 23. Appl Environ Microbiol. 1992;58(7):2331-3.
    • (1992) Appl Environ Microbiol. , vol.58 , Issue.7 , pp. 2331-2333
    • Strobel, H.J.1
  • 78
    • 79952762338 scopus 로고    scopus 로고
    • Effects of a perennial ryegrass diet or total mixed ration diet offered to spring-calving Holstein-Friesian dairy cows on methane emissions, dry matter intake, and milk production
    • O'Neill BF, Deighton MH, O'Loughlin BM, et al. Effects of a perennial ryegrass diet or total mixed ration diet offered to spring-calving Holstein-Friesian dairy cows on methane emissions, dry matter intake, and milk production. J Dairy Sci. 2011;94(4):1941-51.
    • (2011) J Dairy Sci. , vol.94 , Issue.4 , pp. 1941-1951
    • O'Neill, B.F.1    Deighton, M.H.2    O'Loughlin, B.M.3
  • 79
    • 84885861151 scopus 로고    scopus 로고
    • Quantitative comparisons of select cultured and uncultured microbial populations in the rumen of cattle fed different diets
    • Kim M, Yu Z. Quantitative comparisons of select cultured and uncultured microbial populations in the rumen of cattle fed different diets. J Anim Sci Biotechnol. 2012;3(1):28.
    • (2012) J Anim Sci Biotechnol. , vol.3 , Issue.1 , pp. 28
    • Kim, M.1    Yu, Z.2
  • 80
    • 85184640104 scopus 로고    scopus 로고
    • Effect of dietary forage sources on rumen microbiota, rumen fermentation and biogenic amines in dairy cows
    • Zhang R, Zhu W, Zhu W, Liu J, Mao S. Effect of dietary forage sources on rumen microbiota, rumen fermentation and biogenic amines in dairy cows. J Sci Food Agric. 2013.
    • (2013) J Sci Food Agric.
    • Zhang, R.1    Zhu, W.2    Zhu, W.3    Liu, J.4    Mao, S.5
  • 81
    • 84874294859 scopus 로고    scopus 로고
    • Effects of dietary forage sources on rumen microbial protein synthesis and milk performance in early lactating dairy cows
    • Zhu W, Fu Y, Wang B, et al. Effects of dietary forage sources on rumen microbial protein synthesis and milk performance in early lactating dairy cows. J Dairy Sci. 2013;96(3):1727-34.
    • (2013) J Dairy Sci. , vol.96 , Issue.3 , pp. 1727-1734
    • Zhu, W.1    Fu, Y.2    Wang, B.3
  • 82
    • 84879793941 scopus 로고    scopus 로고
    • Comparative analysis of microbial profiles in cow rumen fed with different dietary fiber by tagged 16S rRNA gene pyrosequencing
    • Thoetkiattikul H, Mhuantong W, Laothanachareon T, et al. Comparative analysis of microbial profiles in cow rumen fed with different dietary fiber by tagged 16S rRNA gene pyrosequencing. Curr Microbiol. 2013;67(2):1-8.
    • (2013) Curr Microbiol. , vol.67 , Issue.2 , pp. 1-8
    • Thoetkiattikul, H.1    Mhuantong, W.2    Laothanachareon, T.3
  • 83
    • 0021432511 scopus 로고
    • Effect of fatty acids or calcium soaps on rumen and total nutrient digestibility of dairy rations
    • Jenkins TC, Palmquist DL. Effect of fatty acids or calcium soaps on rumen and total nutrient digestibility of dairy rations. J Dairy Sci. 1984;67(5):978-86.
    • (1984) J Dairy Sci. , vol.67 , Issue.5 , pp. 978-986
    • Jenkins, T.C.1    Palmquist, D.L.2
  • 84
    • 84866285822 scopus 로고    scopus 로고
    • Dietary fish oil supplements modify ruminal biohydrogenation, alter the flow of fatty acids at the omasum, and induce changes in the Ruminal Butyrivibrio population in lactating cows
    • Shingfield KJ, Kairenius P, Arölä A, et al. Dietary fish oil supplements modify ruminal biohydrogenation, alter the flow of fatty acids at the omasum, and induce changes in the Ruminal Butyrivibrio population in lactating cows. J Nutr. 2012;142(8):1437-48.
    • (2012) J Nutr. , vol.142 , Issue.8 , pp. 1437-1448
    • Shingfield, K.J.1    Kairenius, P.2    Arölä, A.3
  • 85
    • 34247646166 scopus 로고    scopus 로고
    • Metabolism of polyunsaturated fatty acids and their toxicity to the microflora of the rumen
    • Maia MRG, Chaudhary LC, Figueres L, Wallace RJ. Metabolism of polyunsaturated fatty acids and their toxicity to the microflora of the rumen. Antonie Van Leeuwenhoek. 2007;91(4):303-14.
    • (2007) Antonie Van Leeuwenhoek. , vol.91 , Issue.4 , pp. 303-314
    • Maia, M.R.G.1    Chaudhary, L.C.2    Figueres, L.3    Wallace, R.J.4
  • 86
    • 84871951751 scopus 로고    scopus 로고
    • Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets
    • Zened A, Combes S, Cauquil L, et al. Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets. FEMS Microbiol Ecol. 2013;83(2):504-14.
    • (2013) FEMS Microbiol Ecol. , vol.83 , Issue.2 , pp. 504-514
    • Zened, A.1    Combes, S.2    Cauquil, L.3
  • 87
    • 79957979016 scopus 로고    scopus 로고
    • As yet uncultured bacteria phylogenetically classified as Prevotella, Lachnospiraceae incertae sedis and unclassified Bacteroidales, Clostridiales and Ruminococcaceae may play a predominant role in ruminal biohydrogenation
    • Huws SA, Kim EJ, Lee MR, et al. As yet uncultured bacteria phylogenetically classified as Prevotella, Lachnospiraceae incertae sedis and unclassified Bacteroidales, Clostridiales and Ruminococcaceae may play a predominant role in ruminal biohydrogenation. Environ Microbiol. 2011;13(6):1500-12.
    • (2011) Environ Microbiol. , vol.13 , Issue.6 , pp. 1500-1512
    • Huws, S.A.1    Kim, E.J.2    Lee, M.R.3
  • 88
    • 0030255893 scopus 로고    scopus 로고
    • Effect of increasing degradable intake protein on intake and digestion of low-quality, tallgrass-prairie forage by beef cows
    • Köster HH, Cochran RC, Titgemeyer EC, Vanzant ES, Abdelgadir I, St-Jean G. Effect of increasing degradable intake protein on intake and digestion of low-quality, tallgrass-prairie forage by beef cows. J Anim Sci. 1996;74(10):2473-81.
    • (1996) J Anim Sci. , vol.74 , Issue.10 , pp. 2473-2481
    • Köster, H.H.1    Cochran, R.C.2    Titgemeyer, E.C.3    Vanzant, E.S.4    Abdelgadir, I.5    St-Jean, G.6
  • 89
    • 0033256901 scopus 로고    scopus 로고
    • Impacts of increasing amounts of supplemental soybean meal on intake and digestion by beef steers and performance by beef cows consuming low-quality tallgrass-prairie forage
    • Mathis CP, Cochran RC, Stokka GL, Heldt JS, Woods BC, Olson KC. Impacts of increasing amounts of supplemental soybean meal on intake and digestion by beef steers and performance by beef cows consuming low-quality tallgrass-prairie forage. J Anim Sci. 1999;77(12):3156-62.
    • (1999) J Anim Sci. , vol.77 , Issue.12 , pp. 3156-3162
    • Mathis, C.P.1    Cochran, R.C.2    Stokka, G.L.3    Heldt, J.S.4    Woods, B.C.5    Olson, K.C.6
  • 90
    • 84882718221 scopus 로고    scopus 로고
    • Supplementation of dried distillers grains with solubles to beef cows consuming low-quality forage during late gestation and early lactation
    • Winterholler SJ, McMurphy CP, Mourer GL, Krehbiel CR, Horn GW, Lalman DL. Supplementation of dried distillers grains with solubles to beef cows consuming low-quality forage during late gestation and early lactation. J Anim Sci. 2012;90(6):2014-25.
    • (2012) J Anim Sci. , vol.90 , Issue.6 , pp. 2014-2025
    • Winterholler, S.J.1    McMurphy, C.P.2    Mourer, G.L.3    Krehbiel, C.R.4    Horn, G.W.5    Lalman, D.L.6
  • 91
    • 0036836081 scopus 로고    scopus 로고
    • Influence of rumen protein degradability and supplementation frequency on steers consuming low-quality forage: I. Site of digestion and microbial efficiency
    • Bohnert DW, Schauer CS, Bauer ML, DelCurto T. Influence of rumen protein degradability and supplementation frequency on steers consuming low-quality forage: I. Site of digestion and microbial efficiency. J Anim Sci. 2002;80(11):2967-77.
    • (2002) J Anim Sci. , vol.80 , Issue.11 , pp. 2967-2977
    • Bohnert, D.W.1    Schauer, C.S.2    Bauer, M.L.3    DelCurto, T.4
  • 93
    • 84856707419 scopus 로고    scopus 로고
    • Nutrient digestibility and ruminal fermentation characteristic in swamp buffaloes fed on chemically treated rice straw and urea
    • Nguyen V, Wanapat M, Khejornsart P, Kongmun P. Nutrient digestibility and ruminal fermentation characteristic in swamp buffaloes fed on chemically treated rice straw and urea. Trop Anim Health Prod. 2012;44(3):629-36.
    • (2012) Trop Anim Health Prod. , vol.44 , Issue.3 , pp. 629-636
    • Nguyen, V.1    Wanapat, M.2    Khejornsart, P.3    Kongmun, P.4
  • 95
    • 0031816030 scopus 로고    scopus 로고
    • Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes
    • Whitford MF, Forster RJ, Beard CE, Gong J, Teather RM. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe. 1998;4(3):153-63.
    • (1998) Anaerobe. , vol.4 , Issue.3 , pp. 153-163
    • Whitford, M.F.1    Forster, R.J.2    Beard, C.E.3    Gong, J.4    Teather, R.M.5
  • 96
    • 0002032609 scopus 로고
    • Bacteroides ruminicola n. sp. and Succinimonas amylolytica; the new genus and species; species of succinic acid-producing anaerobic bacteria of the bovine rumen
    • Bryant MP, Small N, Bouma C, Chu H. Bacteroides ruminicola n. sp. and Succinimonas amylolytica; the new genus and species; species of succinic acid-producing anaerobic bacteria of the bovine rumen. J Bacteriol. 1958;76(1):15-23.
    • (1958) J Bacteriol. , vol.76 , Issue.1 , pp. 15-23
    • Bryant, M.P.1    Small, N.2    Bouma, C.3    Chu, H.4
  • 97
    • 77749334332 scopus 로고    scopus 로고
    • Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis
    • Bekele AZ, Koike S, Kobayashi Y. Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis. FEMS Microbiol Lett. 2010;305(1):49-57.
    • (2010) FEMS Microbiol Lett. , vol.305 , Issue.1 , pp. 49-57
    • Bekele, A.Z.1    Koike, S.2    Kobayashi, Y.3
  • 98
    • 0043113323 scopus 로고    scopus 로고
    • Phenotypic diversity among ruminal isolates of Prevotella ruminicola: Proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola
    • Avgustin G, Wallace RJ, Flint HJ. Phenotypic diversity among ruminal isolates of Prevotella ruminicola: proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola. Int J Syst Bacteriol. 1997;47(2):284-8.
    • (1997) Int J Syst Bacteriol. , vol.47 , Issue.2 , pp. 284-288
    • Avgustin, G.1    Wallace, R.J.2    Flint, H.J.3
  • 99
    • 0343627905 scopus 로고    scopus 로고
    • Unravelling the genetic diversity of ruminal bacteria belonging to the CFB phylum
    • Ramsak A, Peterka M, Tajima K, et al. Unravelling the genetic diversity of ruminal bacteria belonging to the CFB phylum. FEMS Microbiol Ecol. 2000;33(1):69-79.
    • (2000) FEMS Microbiol Ecol. , vol.33 , Issue.1 , pp. 69-79
    • Ramsak, A.1    Peterka, M.2    Tajima, K.3
  • 100
    • 0034121696 scopus 로고    scopus 로고
    • Phenotypic characterization of polysaccharidases produced by four Prevotella type strains
    • Matsui H, Ogata K, Tajima K, et al. Phenotypic characterization of polysaccharidases produced by four Prevotella type strains. Curr Microbiol. 2000;41(1):45-9.
    • (2000) Curr Microbiol. , vol.41 , Issue.1 , pp. 45-49
    • Matsui, H.1    Ogata, K.2    Tajima, K.3
  • 101
    • 78149466996 scopus 로고    scopus 로고
    • Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: Insights into their environmental niche
    • Purushe J, Fouts DE, Morrison M, et al. Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microb Ecol. 2010;60(4):721-9.
    • (2010) Microb Ecol. , vol.60 , Issue.4 , pp. 721-729
    • Purushe, J.1    Fouts, D.E.2    Morrison, M.3
  • 102
    • 0030099278 scopus 로고    scopus 로고
    • Interactions between Fibrobacter succinogenes, Prevotella ruminicola, and Ruminococcus flavefaciens in the digestion of cellulose from forages
    • Fondevila M, Dehority BA. Interactions between Fibrobacter succinogenes, Prevotella ruminicola, and Ruminococcus flavefaciens in the digestion of cellulose from forages. J Anim Sci. 1996;74(3):678-84.
    • (1996) J Anim Sci. , vol.74 , Issue.3 , pp. 678-684
    • Fondevila, M.1    Dehority, B.A.2
  • 103
    • 0026200781 scopus 로고
    • Effects of microbial synergism on fibre digestion in the rumen
    • Dehority BA. Effects of microbial synergism on fibre digestion in the rumen. Proc Nutr Soc. 1991;50(02):149-59.
    • (1991) Proc Nutr Soc. , vol.50 , Issue.2 , pp. 149-159
    • Dehority, B.A.1
  • 104
    • 33749574354 scopus 로고    scopus 로고
    • Plant glycoside hydrolases involved in cell wall polysaccharide degradation
    • Minic Z, Jouanin L. Plant glycoside hydrolases involved in cell wall polysaccharide degradation. Plant Physiol Biochem. 2006;44(7-9):435-49.
    • (2006) Plant Physiol Biochem. , vol.44 , Issue.7-9 , pp. 435-449
    • Minic, Z.1    Jouanin, L.2
  • 105
    • 84863098466 scopus 로고    scopus 로고
    • High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing
    • Ross EM, Moate PJ, Bath CR, et al. High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing. BMC Genet. 2012;13(1):53.
    • (2012) BMC Genet. , vol.13 , Issue.1 , pp. 53
    • Ross, E.M.1    Moate, P.J.2    Bath, C.R.3
  • 107
    • 84855779542 scopus 로고    scopus 로고
    • Perturbation dynamics of the rumen microbiota in response to exogenous butyrate
    • Li RW, Wu S, Baldwin RLVI, Li W, Li C. Perturbation dynamics of the rumen microbiota in response to exogenous butyrate. PLoS One. 2012;7(1):e29392.
    • (2012) PLoS One. , vol.7 , Issue.1
    • Li, R.W.1    Wu, S.2    Baldwin, R.L.V.I.3    Li, W.4    Li, C.5
  • 108
    • 84855271565 scopus 로고    scopus 로고
    • Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
    • Berg MillerME, Yeoman CJ, Chia N, et al. Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome. Environ Microbiol. 2012;14(1):207-27.
    • (2012) Environ Microbiol. , vol.14 , Issue.1 , pp. 207-227
    • Berg Miller, M.E.1    Yeoman, C.J.2    Chia, N.3
  • 109
    • 84873688248 scopus 로고    scopus 로고
    • The bacterial community composition of the bovine rumen detected using pyrosequencing of 16S rRNA genes
    • Wu S, Baldwin Vi RL, Li W, Li C, Connor EE, Li RW. The bacterial community composition of the bovine rumen detected using pyrosequencing of 16S rRNA genes. Metagenomics. 2012;1-11.
    • (2012) Metagenomics , pp. 1-11
    • Wu, S.1    Baldwin VI, R.L.2    Li, W.3    Li, C.4    Connor, E.E.5    Li, R.W.6
  • 110
    • 84875435462 scopus 로고    scopus 로고
    • The effect of brown midrib corn silage and dried distillers' grains with solubles on milk production, nitrogen utilization and microbial community structure in dairy cows
    • Ramirez HR, Nestor K, Tedeschi L, et al. The effect of brown midrib corn silage and dried distillers' grains with solubles on milk production, nitrogen utilization and microbial community structure in dairy cows. Can J Anim Sci. 2012;92(3):365-80.
    • (2012) Can J Anim Sci. , vol.92 , Issue.3 , pp. 365-380
    • Ramirez, H.R.1    Nestor, K.2    Tedeschi, L.3
  • 111
    • 84992487478 scopus 로고    scopus 로고
    • Evaluation of the ruminal bacterial diversity of cattle fed diets containing citrus pulp pellets
    • Broadway P, Callaway T, Carroll J, et al. Evaluation of the ruminal bacterial diversity of cattle fed diets containing citrus pulp pellets. Agric Food Anal Bacteriol. 2012;2:297-308.
    • (2012) Agric Food Anal Bacteriol. , vol.2 , pp. 297-308
    • Broadway, P.1    Callaway, T.2    Carroll, J.3
  • 112
    • 84882921441 scopus 로고    scopus 로고
    • Investigating the effect of two methane-mitigating diets on the rumen microbiome using massively parallel sequencing
    • Ross E, Moate P, Marett L, Cocks B, Hayes B. Investigating the effect of two methane-mitigating diets on the rumen microbiome using massively parallel sequencing. J Dairy Sci. 2013;96(9):6030-46.
    • (2013) J Dairy Sci. , vol.96 , Issue.9 , pp. 6030-6046
    • Ross, E.1    Moate, P.2    Marett, L.3    Cocks, B.4    Hayes, B.5
  • 113
    • 84884148911 scopus 로고    scopus 로고
    • Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing
    • Mao SY, Zhang RY, Wang DS, Zhu WY. Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing. Anaerobe. 2013;24:12-9.
    • (2013) Anaerobe. , vol.24 , pp. 12-19
    • Mao, S.Y.1    Zhang, R.Y.2    Wang, D.S.3    Zhu, W.Y.4
  • 114
    • 84877151034 scopus 로고    scopus 로고
    • Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer
    • de Oliveira MN, Jewell KA, Freitas FS, et al. Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer. Vet Microbiol. 2013;164(3-4):307-14.
    • (2013) Vet Microbiol. , vol.164 , Issue.3-4 , pp. 307-314
    • de Oliveira, M.N.1    Jewell, K.A.2    Freitas, F.S.3
  • 115
    • 84879751516 scopus 로고    scopus 로고
    • The effects of a probiotic yeast on the bacterial diversity and population structure in the rumen of cattle
    • Pinloche E, McEwan N, Marden J-P, Bayourthe C, Auclair E, Newbold CJ. The effects of a probiotic yeast on the bacterial diversity and population structure in the rumen of cattle. PLoS One. 2013;8(7):e67824.
    • (2013) PLoS One. , vol.8 , Issue.7
    • Pinloche, E.1    McEwan, N.2    Marden, J.-P.3    Bayourthe, C.4    Auclair, E.5    Newbold, C.J.6
  • 116
    • 84927578581 scopus 로고    scopus 로고
    • Microbial biodiversity of the liquid fraction of rumen content from lactating cows
    • Sandri M, Manfrin C, Pallavicini A, Stefanon B. Microbial biodiversity of the liquid fraction of rumen content from lactating cows. Animal. 2014;8(04):572-9.
    • (2014) Animal. , vol.8 , Issue.4 , pp. 572-579
    • Sandri, M.1    Manfrin, C.2    Pallavicini, A.3    Stefanon, B.4
  • 117
    • 84892556934 scopus 로고    scopus 로고
    • Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential
    • Rey M, Enjalbert F, Combes S, Cauquil L, Bouchez O, Monteils V. Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential. J Appl Microbiol. 2014;116(2):245-57.
    • (2014) J Appl Microbiol. , vol.116 , Issue.2 , pp. 245-257
    • Rey, M.1    Enjalbert, F.2    Combes, S.3    Cauquil, L.4    Bouchez, O.5    Monteils, V.6
  • 118
    • 84899809299 scopus 로고    scopus 로고
    • Potential role of the bovine rumen microbiome in modulating milk composition and feed efficiency
    • Jami E, White BA, Mizrahi I. Potential role of the bovine rumen microbiome in modulating milk composition and feed efficiency. PLoS One. 2014;9(1):e85423.
    • (2014) PLoS One. , vol.9 , Issue.1
    • Jami, E.1    White, B.A.2    Mizrahi, I.3
  • 119
    • 84893640929 scopus 로고    scopus 로고
    • Effect of feeding dried distillers grains with solubles on ruminal biohydrogenation, intestinal fatty acid profile, and gut microbial diversity evaluated through DNA pyro-sequencing
    • Castillo-Lopez E, Ramirez Ramirez HA, Klopfenstein TJ, et al. Effect of feeding dried distillers grains with solubles on ruminal biohydrogenation, intestinal fatty acid profile, and gut microbial diversity evaluated through DNA pyro-sequencing. J Anim Sci. 2014;92(2):733-43.
    • (2014) J Anim Sci. , vol.92 , Issue.2 , pp. 733-743
    • Castillo-Lopez, E.1    Ramirez Ramirez, H.A.2    Klopfenstein, T.J.3
  • 120
    • 84897596107 scopus 로고    scopus 로고
    • Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tracts of preweaned calves
    • Malmuthuge N, Griebel PJ, Guan LL. Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tracts of preweaned calves. Appl Environ Microbiol. 2014;80(6):2021-8.
    • (2014) Appl Environ Microbiol. , vol.80 , Issue.6 , pp. 2021-2028
    • Malmuthuge, N.1    Griebel, P.J.2    Guan, L.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.