메뉴 건너뛰기




Volumn 4, Issue , 2013, Pages

Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; METHANE; METHYLAMINE; RNA 16S;

EID: 84874628087     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms2432     Document Type: Article
Times cited : (248)

References (37)
  • 3
    • 45749140542 scopus 로고    scopus 로고
    • Structure of the archaeal community of the rumen
    • DOI 10.1128/AEM.02812-07
    • Janssen, P. H. & Kirs, M. Structure of the archaeal community of the rumen. Appl. Environ. Microbiol. 74, 3619-3625 (2008) (Pubitemid 351874890)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.12 , pp. 3619-3625
    • Janssen, P.H.1    Kirs, M.2
  • 5
    • 77951253120 scopus 로고    scopus 로고
    • Options for the abatement of methane and nitrous oxide from ruminant production: A review
    • Eckard, R. J., Grainger, C. & de Klein, C. A. M. Options for the abatement of methane and nitrous oxide from ruminant production: A review. Livestock Sci. 130, 47-56 (2010)
    • (2010) Livestock Sci. , vol.130 , pp. 47-56
    • Eckard, R.J.1    Grainger, C.2    De Klein, C.A.M.3
  • 6
    • 0035849668 scopus 로고    scopus 로고
    • Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens
    • DOI 10.1016/S0378-1097(01)00201-4, PII S0378109701002014
    • Tajima, K., Nagamine, T., Matsui, H., Nakamura, M. & Aminov, R. I. Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens. FEMS Microbiol. Lett. 200, 67-72 (2001) (Pubitemid 32532116)
    • (2001) FEMS Microbiology Letters , vol.200 , Issue.1 , pp. 67-72
    • Tajima, K.1    Nagamine, T.2    Matsui, H.3    Nakamura, M.4    Aminov, R.I.5
  • 7
    • 15944406459 scopus 로고    scopus 로고
    • Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture
    • DOI 10.1111/j.1462-2920.2005.00723.x
    • Kemnitz, D., Kolb, S. & Conrad, R. Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture. Environ. Microbiol. 7, 553-565 (2005) (Pubitemid 40441028)
    • (2005) Environmental Microbiology , vol.7 , Issue.4 , pp. 553-565
    • Kemnitz, D.1    Kolb, S.2    Conrad, R.3
  • 8
    • 79959202461 scopus 로고    scopus 로고
    • Exploring rumen methanogen genomes to identify targets for methane mitigation strategies
    • Attwood, G. T. et al. Exploring rumen methanogen genomes to identify targets for methane mitigation strategies. Anim. Feed Sci. Technol. 166-167, 65-75 (2011)
    • (2011) Anim. Feed Sci. Technol. , vol.166-167 , pp. 65-75
    • Attwood, G.T.1
  • 9
    • 64749087385 scopus 로고    scopus 로고
    • Community composition and density of methanogens in the foregut of the Tammar Wallaby (Macropus eugenii)
    • Evans, P. N. et al. Community composition and density of methanogens in the foregut of the Tammar Wallaby (Macropus eugenii). Appl. Environ. Microbiol. 75, 2598-2602 (2009)
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2598-2602
    • Evans, P.N.1
  • 10
    • 84864677092 scopus 로고    scopus 로고
    • Methanomassiliicoccus luminyensis gen nov., sp. nov., a methanogenic archaeon isolated from human faeces
    • Dridi, B., Fardeau, M. L., Ollivier, B., Raoult, D. & Drancourt, M. Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces. Int. J. Syst. Evol. Microbiol. 62, 1902-1907 (2012)
    • (2012) Int. J. Syst. Evol. Microbiol. , vol.62 , pp. 1902-1907
    • Dridi, B.1    Fardeau, M.L.2    Ollivier, B.3    Raoult, D.4    Drancourt, M.5
  • 11
    • 79958770627 scopus 로고    scopus 로고
    • Can enteric methane emissions from ruminants be lowered without lowering their production? Anim
    • Grainger, C. & Beauchemin, K. A. Can enteric methane emissions from ruminants be lowered without lowering their production? Anim. Feed Sci. Technol 166, 308-320 (2011)
    • (2011) Feed Sci. Technol , vol.166 , pp. 308-320
    • Grainger, C.1    Beauchemin, K.A.2
  • 12
    • 84862876455 scopus 로고    scopus 로고
    • Enteric methane mitigation technologies for ruminant livestock: A synthesis of current research and future directions
    • Patra, A. K. Enteric methane mitigation technologies for ruminant livestock: a synthesis of current research and future directions. Environ Monit Assess 184, 1929-1952 (2012)
    • (2012) Environ Monit Assess , vol.184 , pp. 1929-1952
    • Patra, A.K.1
  • 13
    • 84874635364 scopus 로고    scopus 로고
    • Methane production and digestion of different physical forms of rapeseed as fat supplement in dairy cows
    • Brask, M. et al. Methane production and digestion of different physical forms of rapeseed as fat supplement in dairy cows. J. Dairy Sci. (In press)
    • J. Dairy Sci. (In Press
    • Brask, M.1
  • 14
    • 49649087440 scopus 로고    scopus 로고
    • Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome
    • Urich, T. et al. Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PLoS ONE 3, e2527 (2008)
    • (2008) PLoS ONE , vol.3
    • Urich, T.1
  • 15
    • 77955603295 scopus 로고    scopus 로고
    • Unlocking short read sequencing for metagenomics
    • Rodrigue, S. et al. Unlocking short read sequencing for metagenomics. PLoS ONE 5, 1-9 (2010)
    • (2010) PLoS ONE , vol.5 , pp. 1-9
    • Rodrigue, S.1
  • 16
    • 79951535930 scopus 로고    scopus 로고
    • Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG
    • Mitra, S. et al. Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. BMC Bioinformatics 12, S21 (2011)
    • (2011) BMC Bioinformatics , vol.12
    • Mitra, S.1
  • 17
    • 77956800914 scopus 로고    scopus 로고
    • Selenocysteine, pyrrolysine, and the unique energy metabolism of methanogenic archaea
    • Rother, M. & Krzycki, J. A. Selenocysteine, pyrrolysine, and the unique energy metabolism of methanogenic archaea. Archaea 2010, 453642 (2010)
    • (2010) Archaea , vol.2010 , pp. 453642
    • Rother, M.1    Krzycki, J.A.2
  • 18
    • 84866338044 scopus 로고    scopus 로고
    • Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species
    • Gorlas, A., Robert, C., Gimenez, G., Drancourt, M. & Raoult, D. Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species. J. Bacteriol. 194, 4745 (2012)
    • (2012) J. Bacteriol. , vol.194 , pp. 4745
    • Gorlas, A.1    Robert, C.2    Gimenez, G.3    Drancourt, M.4    Raoult, D.5
  • 19
    • 84870794077 scopus 로고    scopus 로고
    • Methanoplasmatales, thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens
    • Paul, K., Nonoh, J. O., Mikulski, L. & Brune, A. 'Methanoplasmatales, ' thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens. Appl. Environ. Microbiol. 78, 8245-8253 (2012)
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 8245-8253
    • Paul, K.1    Nonoh, J.O.2    Mikulski, L.3    Brune, A.4
  • 20
    • 0017877032 scopus 로고
    • Conversion of choline methyl groups through trimethylamine into methane in the rumen
    • Neill, A. R., Grime, D. W. & Dawson, R. M. C. Conversion of choline methyl groups through trimethylamine into methane in the rumen. Biochem. J. 170, 529-535 (1978) (Pubitemid 8290547)
    • (1978) Biochemical Journal , vol.170 , Issue.3 , pp. 529-535
    • Neill, A.R.1    Grime, D.W.2    Dawson, R.M.C.3
  • 21
  • 22
    • 0022529568 scopus 로고
    • Degradation of various amine compounds by mesophilic clostridia
    • Möller, B., Hippe, H. & Gottschalk, G. Degradation of various amine compounds by mesophilic clostridia. Arch. Microbiol. 145, 85-90 (1986) (Pubitemid 16065416)
    • (1986) Archives of Microbiology , vol.145 , Issue.1 , pp. 85-90
    • Moller, B.1    Hippe, H.2    Gottschalk, G.3
  • 23
    • 0013832936 scopus 로고
    • The clostridial fermentations of choline and ethanolamine
    • Bradbeer, C. The clostridial fermentations of choline and ethanolamine. J. Biol. Chem. 240, 4669-4674 (1965)
    • (1965) J. Biol. Chem. , vol.240 , pp. 4669-4674
    • Bradbeer, C.1
  • 24
    • 20144364162 scopus 로고    scopus 로고
    • Higher-level classification of the Archaea: Evolution of methanogenesis and methanogens
    • Bapteste, E ., Brochier, C. & Boucher, Y. Higher-level classification of the archaea: evolution of methanogenesis and methanogens. Archaea 1, 353-363 (2005) (Pubitemid 40801843)
    • (2005) Archaea , vol.1 , Issue.5 , pp. 353-363
    • Bapteste, E.1    Brochier, C.2    Boucher, Y.3
  • 25
    • 84867099055 scopus 로고    scopus 로고
    • Technical note: Test of a low cost and animal-friendly system for measuring methane emissions from dairy cows
    • Hellwing, A. L. F., Lund, P., Weisbjerg, M. R., Brask, M. & Hvelplund, T. Technical note: Test of a low cost and animal-friendly system for measuring methane emissions from dairy cows. J. Dairy Sci. 95, 6077-6085 (2012)
    • (2012) J. Dairy Sci. , vol.95 , pp. 6077-6085
    • Hellwing, A.L.F.1    Lund, P.2    Weisbjerg, M.R.3    Brask, M.4    Hvelplund, T.5
  • 26
    • 38949188903 scopus 로고    scopus 로고
    • In vitro methane emission and acetate:propionate ratio are decreased when artificial stimulation of the rumen wall is combined with increasing grain diets in sheep
    • DOI 10.2527/jas.2007-0373
    • Christophersen, C. T., Wright, A. D. G. & Vercoe, P. E. In vitro methane emission and acetate:propionate ratio are decreased when artificial stimulation of the rumen wall is combined with increasing grain diets in sheep. J. Anim. Sci. 86, 384-389 (2008) (Pubitemid 351229760)
    • (2008) Journal of Animal Science , vol.86 , Issue.2 , pp. 384-389
    • Christophersen, C.T.1    Wright, A.D.G.2    Vercoe, P.E.3
  • 27
    • 35948938623 scopus 로고    scopus 로고
    • Quantitation and diversity analysis of ruminal methanogenic populations in response to the antimethanogenic compound bromochloromethane
    • DOI 10.1111/j.1574-6941.2007.00394.x
    • Denman, S. E., Tomkins, N. W. & McSweeney, C. S. Quantitation and diversity analysis of ruminal methanogenic populations in response to the antimethanogenic compound bromochloromethane. FEMS Microbiol. Ecol. 62, 313-322 (2007) (Pubitemid 350076062)
    • (2007) FEMS Microbiology Ecology , vol.62 , Issue.3 , pp. 313-322
    • Denman, S.E.1    Tomkins, N.W.2    McSweeney, C.S.3
  • 28
    • 84863697442 scopus 로고    scopus 로고
    • Community structure analysis of methanogens associated with rumen protozoa reveals bias in universal archaeal primers
    • Tymensen, L. D. & McAllister, T. A. Community structure analysis of methanogens associated with rumen protozoa reveals bias in universal archaeal primers. Appl. Environ. Microbiol. 78, 4051-4056 (2012)
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 4051-4056
    • Tymensen, L.D.1    McAllister, T.A.2
  • 29
    • 84859945291 scopus 로고    scopus 로고
    • Metatranscriptomics of the marine sponge Geodia barretti: Tackling phylogeny and function of its microbial community
    • Radax, R. et al. Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. Environ. Microbiol. 14, 1308-1324 (2012)
    • (2012) Environ. Microbiol. , vol.14 , pp. 1308-1324
    • Radax, R.1
  • 32
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • DOI 10.1101/gr.9.9.868
    • Huang, X. & Madan, A. CAP3: A DNA sequence assembly program. Genome Res. 9, 868-877 (1999) (Pubitemid 29488446)
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 33
    • 36448991500 scopus 로고    scopus 로고
    • ClustalW and ClustalX version 2
    • Larkin, M. A. et al. ClustalW and ClustalX version 2. Bioinformatics 23, 2947-2948 (2007)
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 34
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T. A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98 (1999)
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 35
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S. & Gascuel, O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003) (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 36
    • 0029853148 scopus 로고    scopus 로고
    • WWW-Query: An on-line retrieval system for biological sequence banks
    • DOI 10.1016/0300-9084(96)84768-7
    • Perrière, G. & Gouy, M. WWW-Query: An on-line retrieval system for biological sequence banks. Biochemie 78, 364-369 (1996) (Pubitemid 26394644)
    • (1996) Biochimie , vol.78 , Issue.5 , pp. 364-369
    • Perriere, G.1    Gouy, M.2
  • 37
    • 0002277197 scopus 로고
    • The AAT/PBV protein evaluation system for ruminants - A revision
    • Madsen, J. et al. The AAT/PBV protein evaluation system for ruminants-a revision. Norwegian J. Agri. Sci. 19, 1-37 (1995).
    • (1995) Norwegian J. Agri. Sci. , vol.19 , pp. 1-37
    • Madsen, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.