-
1
-
-
0032119381
-
Effects of form of the diet on anatomical, microbial, and fermentative development of the rumen of neonatal calves
-
Beharka AA, Nagaraja TG, Morrill JL, Kennedy GA, Klemm RD. (1998). Effects of form of the diet on anatomical, microbial, and fermentative development of the rumen of neonatal calves. J Dairy Sci 81: 1946-1955.
-
(1998)
J Dairy Sci
, vol.81
, pp. 1946-1955
-
-
Beharka, A.A.1
Nagaraja, T.G.2
Morrill, J.L.3
Kennedy, G.A.4
Klemm, R.D.5
-
2
-
-
0002857197
-
Studies on the composition of the ruminal flora and fauna of young calves
-
Bryant MP, Small N, Bouma C, Robinsona I. (1958). Studies on the Composition of the Ruminal Flora and Fauna of Young Calves. J Dairy Sci 41: 1747-1767.
-
(1958)
J Dairy Sci
, vol.41
, pp. 1747-1767
-
-
Bryant, M.P.1
Small, N.2
Bouma, C.3
Robinsona, I.4
-
3
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK et al. (2011). QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336.
-
(2011)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
4
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S et al. (2010). Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 107: 14691-14696.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
-
5
-
-
0018836188
-
Effect of short-term chilling of rumen contents on viable bacterial numbers
-
Dehority BA, Grubb JA. (1980). Effect of short-term chilling of rumen contents on viable bacterial numbers. Appl Environ Microbiol 39: 376-381.
-
(1980)
Appl Environ Microbiol
, vol.39
, pp. 376-381
-
-
Dehority, B.A.1
Grubb, J.A.2
-
7
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
-
Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N et al. (2010). Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci USA 107: 11971-11975.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
Fierer, N.6
-
8
-
-
49549107771
-
Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
-
Dowd SE, Callaway TR, Wolcott RD, Sun Y, McKeehan T, Hagevoort RG et al. (2008). Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol 8: 125.
-
(2008)
BMC Microbiol
, vol.8
, pp. 125
-
-
Dowd, S.E.1
Callaway, T.R.2
Wolcott, R.D.3
Sun, Y.4
McKeehan, T.5
Hagevoort, R.G.6
-
9
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
10
-
-
41349093562
-
Plant cell wall breakdown by anaerobic microorganisms from the Mammalian digestive tract
-
Flint HJ, Bayer EA. (2008). Plant cell wall breakdown by anaerobic microorganisms from the Mammalian digestive tract. Ann N Y Acad Sci 1125: 280-288.
-
(2008)
Ann N y Acad Sci
, vol.1125
, pp. 280-288
-
-
Flint, H.J.1
Bayer, E.A.2
-
11
-
-
0020692550
-
Ecological factors determining establishment of cellulolytic bacteria and protozoa in the rumens of meroxenic lambs
-
Fonty G, Gouet P, Jouany JP, Senaud J. (1983). Ecological factors determining establishment of cellulolytic bacteria and protozoa in the rumens of meroxenic lambs. J Gen Microbiol 129: 213-223.
-
(1983)
J Gen Microbiol
, vol.129
, pp. 213-223
-
-
Fonty, G.1
Gouet, P.2
Jouany, J.P.3
Senaud, J.4
-
12
-
-
0023229528
-
Establishment of the microflora and anaerobic fungi in the rumen of lambss
-
Fonty G, Gouet P, Jouany J-P, Senaud J. (1987). Establishment of the Microflora and Anaerobic Fungi in the Rumen of Lambs. J Gen Microbiol 133: 1835-1843.
-
(1987)
J Gen Microbiol
, vol.133
, pp. 1835-1843
-
-
Fonty, G.1
Gouet, P.2
Jouany, J.-P.3
Senaud, J.4
-
13
-
-
77956094890
-
-
2nd edn. Springer: New York
-
Garrity GB, Don J, Krieg, Noel R, Staley, James R. (2005). Bergey's Manual of Determinative Bacteriology Volume 2: The Proteobacteria, 2nd edn. Springer: New York.
-
(2005)
Bergey's Manual of Determinative Bacteriology Volume 2: The Proteobacteria
-
-
Garrity, G.B.1
Don, J.2
Krieg3
Noel, R.4
Staley5
James, R.6
-
14
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G et al. (2011). Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21: 494-504.
-
(2011)
Genome Res
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
-
15
-
-
34748886657
-
PAST: Paleontological statistics software package for education and data analysis
-
Hammer Ø, Harper DAT, Ryan PD. (2001). PAST: Paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4: 9.
-
(2001)
Palaeontologia Electronica
, vol.4
, pp. 9
-
-
Hammer Ø1
Harper, D.A.T.2
Ryan, P.D.3
-
17
-
-
84861910337
-
Similarity of the ruminal bacteria across individual lactating cows
-
Jami E, Mizrahi I. (2012a). Similarity of the ruminal bacteria across individual lactating cows. Anaerobe 18: 338-343.
-
(2012)
Anaerobe
, vol.18
, pp. 338-343
-
-
Jami, E.1
Mizrahi, I.2
-
18
-
-
84858185944
-
Composition and similarity of bovine rumen microbiota across individual animals
-
Jami E, Mizrahi I. (2012b). Composition and similarity of bovine rumen microbiota across individual animals. PLoS ONE 7: e33306.
-
(2012)
PLoS ONE
, vol.7
-
-
Jami, E.1
Mizrahi, I.2
-
19
-
-
33644952722
-
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
-
Janssen PH. (2006). Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol 72: 1719-1728.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1719-1728
-
-
Janssen, P.H.1
-
20
-
-
34848818586
-
A survey of bovine colostrum composition and colostrum management practices on Pennsylvania dairy farms
-
Kehoe SI, Jayarao BM, Heinrichs AJ. (2007). A survey of bovine colostrum composition and colostrum management practices on Pennsylvania dairy farms. J Dairy Sci 90: 4108-4116.
-
(2007)
J Dairy Sci
, vol.90
, pp. 4108-4116
-
-
Kehoe, S.I.1
Jayarao, B.M.2
Heinrichs, A.J.3
-
21
-
-
0023431447
-
Dietary fiber and early weaning on growth and rumen development of calves
-
Klein RD, Kincaid RL, Hodgson AS, Harrison JH, Hillers JK, Cronrath JD. (1987). Dietary fiber and early weaning on growth and rumen development of calves. J Dairy Sci 70: 2095-2104.
-
(1987)
J Dairy Sci
, vol.70
, pp. 2095-2104
-
-
Klein, R.D.1
Kincaid, R.L.2
Hodgson, A.S.3
Harrison, J.H.4
Hillers, J.K.5
Cronrath, J.D.6
-
22
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R et al. (2011). Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci USA 108(Suppl 1): 4578-4585.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.SUPPL. 1
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
Knight, R.6
-
23
-
-
77956094890
-
-
2nd edn. Springer: New York
-
Krieg NRL W, Whitman WB, Hedlund BP, Paster BJ, Staley JT, Ward N et al. (2010). Bergey's Manual of Systematic Bacteriology: The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes, 2nd edn. Springer: New York.
-
(2010)
Bergey's Manual of Systematic Bacteriology: The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes
-
-
Krieg Nrl, W.1
Whitman, W.B.2
Hedlund, B.P.3
Paster, B.J.4
Staley, J.T.5
Ward, N.6
-
24
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS et al. (2008). Evolution of mammals and their gut microbes. Science 320: 1647-1651.
-
(2008)
Science
, vol.320
, pp. 1647-1651
-
-
Ley, R.E.1
Hamady, M.2
Lozupone, C.3
Turnbaugh, P.J.4
Ramey, R.R.5
Bircher, J.S.6
-
25
-
-
84855275498
-
Characterization of the rumen microbiota of preruminant calves using metagenomic tools
-
Li RW, Connor EE, Li C, Baldwin Vi RL, Sparks ME. (2011). Characterization of the rumen microbiota of preruminant calves using metagenomic tools. Environ Microbiol 14: 129-139.
-
(2011)
Environ Microbiol
, vol.14
, pp. 129-139
-
-
Li, R.W.1
Connor, E.E.2
Li, C.3
Baldwin Vi, R.L.4
Sparks, M.E.5
-
26
-
-
0036545087
-
Mutualistic fermentative digestion in the gastrointestinal tract: Diversity and evolution 1
-
Mackie RI. (2002). Mutualistic fermentative digestion in the gastrointestinal tract: diversity and evolution 1. Integr Comp Biol 42: 319-326.
-
(2002)
Integr Comp Biol
, vol.42
, pp. 319-326
-
-
MacKie, R.I.1
-
27
-
-
0027094267
-
Colonization of microorganisms in the rumen of young calves
-
Minato H, Otsuka M, Shirasaka S, Itabashi H, Mitsumori M. (1992). Colonization of microorganisms in the rumen of young calves. J Gen Appl Microbiol 38: 447-456.
-
(1992)
J Gen Appl Microbiol
, vol.38
, pp. 447-456
-
-
Minato, H.1
Otsuka, M.2
Shirasaka, S.3
Itabashi, H.4
Mitsumori, M.5
-
28
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO. (2007). Development of the human infant intestinal microbiota. PLoS Biol 5: e177.
-
(2007)
PLoS Biol
, vol.5
-
-
Palmer, C.1
Bik, E.M.2
Digiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
29
-
-
78149466996
-
Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: Insights into their environmental niche
-
Purushe J, Fouts DE, Morrison M, White BA, Mackie RI, Coutinho PM et al. (2010). Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microb Ecol 60: 721-729.
-
(2010)
Microb Ecol
, vol.60
, pp. 721-729
-
-
Purushe, J.1
Fouts, D.E.2
Morrison, M.3
White, B.A.4
MacKie, R.I.5
Coutinho, P.M.6
-
30
-
-
34247620908
-
Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR
-
Stevenson DM, Weimer PJ. (2007). Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR. Appl Microbiol Biotechnol 75: 165-174.
-
(2007)
Appl Microbiol Biotechnol
, vol.75
, pp. 165-174
-
-
Stevenson, D.M.1
Weimer, P.J.2
-
32
-
-
75849147281
-
-
Springer: New York
-
Vos PG G, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer K-H et al. (2010). Bergey's Manual of Systematic Bacteriology: The Firmicutes. Springer: New York.
-
(2010)
Bergey's Manual of Systematic Bacteriology: The Firmicutes
-
-
Vos, P.G.G.1
Jones, D.2
Krieg, N.R.3
Ludwig, W.4
Rainey, F.A.5
Schleifer, K.-H.6
-
33
-
-
0004318743
-
-
Springer: New York
-
Whitman WBGM, Kämpfer P, Busse H-J, Trujillo ME, Ludwig W, Suzuki K-i et al. (2012). Bergey's Manual of Systematic Bacteriology Volume 5: The Actinobacteria. Springer: New York.
-
(2012)
Bergey's Manual of Systematic Bacteriology Volume 5: The Actinobacteria
-
-
Whitman, W.B.G.M.1
Kämpfer, P.2
Busse, H.-J.3
Trujillo, M.E.4
Ludwig, W.5
Suzuki, K.-I.6
-
34
-
-
77955067191
-
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
-
Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, Bittinger K et al. (2010). Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiol 10: 206.
-
(2010)
BMC Microbiol
, vol.10
, pp. 206
-
-
Wu, G.D.1
Lewis, J.D.2
Hoffmann, C.3
Chen, Y.Y.4
Knight, R.5
Bittinger, K.6
-
35
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M et al. (2012). Human gut microbiome viewed across age and geography. Nature 486: 222-227.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
-
36
-
-
49649111434
-
Role of microorganisms in the evolution of animals and plants: The hologenome theory of evolution
-
Zilber-Rosenberg I, Rosenberg E. (2008). Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution. FEMS Microbiol Rev 32: 723-735.
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 723-735
-
-
Zilber-Rosenberg, I.1
Rosenberg, E.2
|