Isolation and characterization of Desulfocurvus thunnarius sp. nov., a sulfate-reducing bacterium isolated from an anaerobic sequencing batch reactor treating cooking wastewater

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART 11, 2013, Pages 4237-4242

  Hamdi, Olfa ^a,b   Hania, Wajdi Ben ^a,b   Postec, Anne ^a   Bartoli, Manon ^a   Hamdi, Moktar ^b   Bouallagui, Hassib ^b   Fauque, Guy ^a   Ollivier, Bernard ^a   Fardeau, Marie Laure ^a  

^a STATION MARINE D ENDOUME   (France)

^b UNIVERSITY OF CARTHAGE   (Tunisia)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; AMINOPHOSPHOLIPID; CARBON DIOXIDE; FATTY ACID; FORMIC ACID; GENOMIC DNA; HYDROGEN; LACTIC ACID; NITRATE; NITRITE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; PYRUVIC ACID; RNA 16S; SULFATE; SULFIDE; SULFITE; SULFUR; THIOSULFATE;

ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CARBON SOURCE; CELL STRUCTURE; DELTAPROTEOBACTERIA; DESULFOCURVUS THUNNARIUS; DESULFOVIBRIONACEAE; DNA CONTENT; ELECTRON TRANSPORT; ENERGY RESOURCE; GENE SEQUENCE; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PH; PHYLOGENY; PRIORITY JOURNAL; SALT TOLERANCE; SEQUENCE ANALYSIS; SEQUENCING BATCH REACTOR; SULFATE REDUCING BACTERIUM; TEMPERATURE; WASTE WATER MANAGEMENT;

EID: 84887125871     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.051664-0     Document Type: Article

References (33)

1. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R. & Wolfe, R. S. (1979). Methanogens: reevaluation of a unique biological group. Microbiol Rev 43, 260-296.
3. Barton, L. L. & Fauque, G. D. (2009). Biochemistry, physiology and biotechnology of sulfate-reducing bacteria. Adv Appl Microbiol 68, 41-98
4. Basso, O., Lascourreges, J.-F., Le Borgne, F., Le Goff, C. & Magot, M. (2009). Characterization by culture and molecular analysis of the microbial diversity of a deep subsurface gas storage aquifer. Res Microbiol 160, 107-116.
5. Ben-Dov, E., Brenner, A. & Kushmaro, A. (2007). Quantification of sulfate-reducing bacteria in industrial wastewater, by real-time polymerase chain reaction (PCR) using dsrA and apsA genes. Microb Ecol 54, 439-451.
6. Birkeland, N.-K. (2005). Sulfate-reducing bacteria and archaea. In Petroleum Microbiology, pp. 35-54. Edited by B. Ollivier & M. Magot. Washington, DC: American Society for Microbiology.
7. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
8. Cord-Ruwisch, R. (1985). A quick method for determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 4, 33-36.
9. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
10. Dinh, H. T., Kuever, J., Mußmann, M., Hassel, A. W., Stratmann, M. & Widdel, F. (2004). Iron corrosion by novel anaerobic microorganisms. Nature 427, 829-832.
11. Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.
12. Fardeau, M.-L., Ollivier, B., Patel, B. K. C., Magot, M., Thomas, P., Rimbault, A., Rocchiccioli, F. S. & Garcia, J.-L. (1997). Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well. Int J Syst Bacteriol 47, 1013-1019.
13. Fardeau, M.-L., Magot, M., Patel, B. K. C., Thomas, P., Garcia, J.-L. & Ollivier, B. (2000). Thermoanaerobacter subterraneus sp. nov., a novel thermophile isolated from oilfield water. Int J Syst Evol Microbiol 50, 2141-2149.
14. Fauque, G. D. & Barton, L. L. (2012). Hemoproteins in dissimilatory sulfate and sulfur-reducing prokaryotes. In Advances in Microbial Physiology, vol. 60, pp. 1-90. Edited by R. K. Poole. Burlington: Elsevier
15. Fauque, G. & Ollivier, B. (2004). Anaerobes: The sulfate-reducing bacteria as an exemple of metabolic diversity. In Microbial Diversity and Bioprospecting, pp. 169-176. Edited by A. T. Bull. Washington, DC: American Society for Microbiology.
16. Fauque, G., LeGall, J. & Barton, L. L. (1991). Sulfate-reducing and sulfur-reducing bacteria. In Variations in Autotrophic Life, pp. 271-337. Edited by J. M. Shively & L. L. Barton. London: Academic Press
17. Hungate, R. E. (1969). A roll tube method for the cultivation of strict anaerobes. Methods Microbiol 3B, 117-132.
18. Huß, V. A., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
19. Jørgensen, B. B. (1977). The sulfur cycle of a coastal marine sediment (Limfjorden, Denmark). Limnol Oceanogr 22, 814-832.
20. Khelifi, N., Ben Romdhane, E., Hedi, A., Postec, A., Fardeau, M.-L., Hamdi, M., Tholozan, J.-L., Ollivier, B. & Hirschler-Réa, A. (2010). Characterization of Microaerobacter geothermalis gen. nov., sp. nov., a novel microaerophilic, nitrate and nitrite-reducing thermophilic bacterium isolated from a terrestrial hot spring in Tunisia. Extremophiles 14, 297-304.
21. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
22. Klouche, N., Basso, O., Lascourrèges, J.-F., Cayol, J.-L., Thomas, P., Fauque, G., Fardeau, M.-L. & Magot, M. (2009). Desulfocurvus vexinensis gen. nov., sp. nov., a sulfate-reducing bacterium isolated from a deep subsurface aquifer. Int J Syst Evol Microbiol 59, 3100-3104.
23. Kuever, J., Rainey, F. A. & Widdel, F. (2005). Genus I. Desulfovibrio. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, Part C, pp. 926-938. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
24. Kuykendall, L. D., Roy, M. A., O'Neil, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and desoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
25. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
26. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16, 584-586.
27. Muyzer, G. & Stams, A. J. (2008). The ecology and biotechnology of sulphate-reducing bacteria. Nat Rev Microbiol 6, 441-454.
28. Ollivier, B. & Guyot, F. (2009). Sulfate-reducing bacteria: a deep biosphere early-life connection? Environ Microbiol Rep 1, 14-16.
29. Ollivier, B., Cayol, J. L. & Fauque, G. (2007). Sulphate-reducing bacteria fro m oil field environments and deep-sea hydrothermal vents. In Sulphate-Reducing Bacteria: Environmental and Engineered Systems, pp. 305-328. Edited by L. L. Barton & W. A. Hamilton. Cambridge: Cambridge University Press.
30. Postgate, J. R. (1956). Cytochrome c3 and desulphoviridin; pigments of the anaerobe Desulphovibrio desulphuricans. J Gen Microbiol 14, 545-572.
31. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum par-simony methods. Mol Biol Evol 28, 2731-2739.
32. Tsu, I.-H., Huang, C.-Y., Garcia, J.-L., Patel, B. K. C., Cayol, J.-L., Baresi, L. & Mah, R. A. (1998). Isolation and characterization of desulfovibrio senezii sp. nov., A halotolerant sulfate reducer from a solar saltern and phylogenetic confirmation of desulfovibrio fructo-sovorans as a new species. Arch Microbiol 170, 313-317.
33. Widdel, F. & Pfennig, N. (1982). Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. II. Incomplete oxidation of propionate by Desulfobulbus propionicus gen. nov., sp. nov. Arch Microbiol 131, 360-365.