메뉴 건너뛰기




Volumn 112, Issue 6, 2012, Pages 1152-1162

Characterization of rumen bacterial diversity and fermentation parameters in concentrate fed cattle with and without forage

Author keywords

DDGS; DGGE; PH; Real time PCR; Rumen bacteria diversity; Shannon Weiner; Simpson's index

Indexed keywords

BACTERIA; POLYMERASE CHAIN REACTION;

EID: 84860838700     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2012.05295.x     Document Type: Article
Times cited : (94)

References (46)
  • 1
    • 0346973568 scopus 로고    scopus 로고
    • The effect of basal diet on lactate-producing bacteria and the susceptibility of sheep to lactic acidosis
    • Al Jassim, R.A.M., Gordon, G.L.R. and Rowe, J.B. (2003) The effect of basal diet on lactate-producing bacteria and the susceptibility of sheep to lactic acidosis. Anim Sci 77, 459-469.
    • (2003) Anim Sci , vol.77 , pp. 459-469
    • Al Jassim, R.A.M.1    Gordon, G.L.R.2    Rowe, J.B.3
  • 2
    • 0023849758 scopus 로고
    • Evaluating constraints on fiber digestion by rumen microbes
    • Allen, M.S. and Mertens, D.R. (1988) Evaluating constraints on fiber digestion by rumen microbes. J Nutr 118, 261-270.
    • (1988) J Nutr , vol.118 , pp. 261-270
    • Allen, M.S.1    Mertens, D.R.2
  • 3
    • 0028933004 scopus 로고
    • Biochemical analysis of starch degradation by Ruminobacter amylophilus 70
    • Anderson, K.L. (1995) Biochemical analysis of starch degradation by Ruminobacter amylophilus 70. Appl Environ Microbiol 61, 1488-1491.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1488-1491
    • Anderson, K.L.1
  • 4
    • 58949097889 scopus 로고    scopus 로고
    • Effect of graded levels of wheat-based dried distillers' grains with solubles on performance and carcass characteristics of feedlot steers
    • Beliveau, R.M. and McKinnon, J.J. (2008) Effect of graded levels of wheat-based dried distillers' grains with solubles on performance and carcass characteristics of feedlot steers. Can J Anim Sci 88, 677-684.
    • (2008) Can J Anim Sci , vol.88 , pp. 677-684
    • Beliveau, R.M.1    McKinnon, J.J.2
  • 5
    • 77950606664 scopus 로고    scopus 로고
    • Effect of graded levels of wheat-based dried distillers' grains with solubles on rumen fermentation in finishing cattle
    • Beliveau, R.M. and McKinnon, J.J. (2009) Effect of graded levels of wheat-based dried distillers' grains with solubles on rumen fermentation in finishing cattle. Can J Anim Sci 89, 513-520.
    • (2009) Can J Anim Sci , vol.89 , pp. 513-520
    • Beliveau, R.M.1    McKinnon, J.J.2
  • 7
    • 3142529147 scopus 로고    scopus 로고
    • The energy content of wet corn distillers grains for lactating dairy cows
    • Birkelo, C.P., Brouk, M.J. and Schingoethe, D.J. (2004) The energy content of wet corn distillers grains for lactating dairy cows. J Dairy Sci 87, 1815-1819.
    • (2004) J Dairy Sci , vol.87 , pp. 1815-1819
    • Birkelo, C.P.1    Brouk, M.J.2    Schingoethe, D.J.3
  • 8
    • 0034540746 scopus 로고    scopus 로고
    • Evaluation of models of acute and subacute acidosis on dry matter intake, ruminal fermentation, blood chemistry, and endocrine profiles of beef steers
    • Brown, M.S., Krehbiel, C.R., Galyean, M.L., Remmenga, M.D., Peters, J.P., Hibbard, B., Robinson, J. and Moseley, W.M. (2000) Evaluation of models of acute and subacute acidosis on dry matter intake, ruminal fermentation, blood chemistry, and endocrine profiles of beef steers. J Anim Sci 78, 3155-3168.
    • (2000) J Anim Sci , vol.78 , pp. 3155-3168
    • Brown, M.S.1    Krehbiel, C.R.2    Galyean, M.L.3    Remmenga, M.D.4    Peters, J.P.5    Hibbard, B.6    Robinson, J.7    Moseley, W.M.8
  • 10
    • 0019776566 scopus 로고
    • Role of Megasphaera elsdenii in the fermentation of DL-[2-13C] lactate in the rumen of dairy cattle
    • Counotte, G.H.M., Prins, R.A., Janssen, R.H.A.M. and Debie, M.J.A. (1981) Role of Megasphaera elsdenii in the fermentation of DL-[2-13C] lactate in the rumen of dairy cattle. Appl Environ Microbiol 42, 649-655.
    • (1981) Appl Environ Microbiol , vol.42 , pp. 649-655
    • Counotte, G.H.M.1    Prins, R.A.2    Janssen, R.H.A.M.3    Debie, M.J.A.4
  • 11
    • 0030834389 scopus 로고    scopus 로고
    • Factors affecting lactate and malate utilization by Selenomonas ruminantium
    • Evans, J.D. and Martin, S.A. (1997) Factors affecting lactate and malate utilization by Selenomonas ruminantium. Appl Environ Microbiol 63, 4853-4858.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4853-4858
    • Evans, J.D.1    Martin, S.A.2
  • 13
    • 85042606451 scopus 로고    scopus 로고
    • Effect of dried distillers' grains from wheat on diet digestibility and performance of feedlot cattle
    • Gibb, D.J., Hao, X. and McAllister, T.A. (2008) Effect of dried distillers' grains from wheat on diet digestibility and performance of feedlot cattle. Can J Anim Sci 88, 659-665.
    • (2008) Can J Anim Sci , vol.88 , pp. 659-665
    • Gibb, D.J.1    Hao, X.2    McAllister, T.A.3
  • 14
    • 0031607267 scopus 로고    scopus 로고
    • Ruminal microbial and fermentative changes associated with experimentally induced subacute acidosis in steers
    • Goad, D.W., Goad, C.L. and Nagaraja, T.G. (1998) Ruminal microbial and fermentative changes associated with experimentally induced subacute acidosis in steers. J Anim Sci 76, 234-241.
    • (1998) J Anim Sci , vol.76 , pp. 234-241
    • Goad, D.W.1    Goad, C.L.2    Nagaraja, T.G.3
  • 15
    • 0000879885 scopus 로고
    • The cellulolytic activity of pure strains of bacteria from the rumen of cattle
    • Halliwell, G. and Bryant, M.P. (1963) The cellulolytic activity of pure strains of bacteria from the rumen of cattle. J Gen Microbiol 32, 441-448.
    • (1963) J Gen Microbiol , vol.32 , pp. 441-448
    • Halliwell, G.1    Bryant, M.P.2
  • 17
    • 70449457268 scopus 로고    scopus 로고
    • Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis
    • Khafipour, E., Li, S., Plaizier, J.C. and Krause, D.O. (2009) Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis. Appl Environ Microbiol 75, 7115-7124.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7115-7124
    • Khafipour, E.1    Li, S.2    Plaizier, J.C.3    Krause, D.O.4
  • 18
    • 0042882236 scopus 로고    scopus 로고
    • Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets
    • Klieve, A.V., Hennessy, D., Ouwerkerk, D., Forster, R.J., Mackie, R.I. and Attwood, G.T. (2003) Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets. J Appl Microbiol 95, 621-630.
    • (2003) J Appl Microbiol , vol.95 , pp. 621-630
    • Klieve, A.V.1    Hennessy, D.2    Ouwerkerk, D.3    Forster, R.J.4    Mackie, R.I.5    Attwood, G.T.6
  • 19
    • 43749120488 scopus 로고    scopus 로고
    • BOARD-INVITED REVIEW: use of distillers by-products in the beef cattle feeding industry
    • Klopfenstein, T.J., Erickson, G.E. and Bremer, V.R. (2008) BOARD-INVITED REVIEW: use of distillers by-products in the beef cattle feeding industry. J Anim Sci 86, 1223-1231.
    • (2008) J Anim Sci , vol.86 , pp. 1223-1231
    • Klopfenstein, T.J.1    Erickson, G.E.2    Bremer, V.R.3
  • 20
    • 33746501424 scopus 로고    scopus 로고
    • Inclusion of novel bacteria in rumen microbiology: need for basic and applied science
    • Kobayashi, Y. (2006) Inclusion of novel bacteria in rumen microbiology: need for basic and applied science. Anim Sci J 77, 375-385.
    • (2006) Anim Sci J , vol.77 , pp. 375-385
    • Kobayashi, Y.1
  • 21
    • 0034803204 scopus 로고    scopus 로고
    • Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches
    • Kocherginskaya, S.A., Aminov, R.I. and White, B.A. (2001) Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches. Anaerobe 7, 119-134.
    • (2001) Anaerobe , vol.7 , pp. 119-134
    • Kocherginskaya, S.A.1    Aminov, R.I.2    White, B.A.3
  • 22
    • 0035856590 scopus 로고    scopus 로고
    • Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens
    • Koike, S. and Kobayashi, Y. (2001) Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens. FEMS Microbiol Lett 204, 361-366.
    • (2001) FEMS Microbiol Lett , vol.204 , pp. 361-366
    • Koike, S.1    Kobayashi, Y.2
  • 23
    • 62649107929 scopus 로고    scopus 로고
    • Fibrolytic rumen bacteria: their ecology and functions
    • Koike, S. and Kobayashi, Y. (2009) Fibrolytic rumen bacteria: their ecology and functions. Asian-Aust J Anim Sci 22, 131-138.
    • (2009) Asian-Aust J Anim Sci , vol.22 , pp. 131-138
    • Koike, S.1    Kobayashi, Y.2
  • 24
    • 78149370598 scopus 로고    scopus 로고
    • Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages
    • Kong, Y., Teather, R. and Forster, R. (2010) Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages. FEMS Microbiol Ecol 74, 612-622.
    • (2010) FEMS Microbiol Ecol , vol.74 , pp. 612-622
    • Kong, Y.1    Teather, R.2    Forster, R.3
  • 25
    • 0030139250 scopus 로고    scopus 로고
    • A simple method for the analysis of particle sizes of forage and total mixed rations
    • Lammers, B.P., Buckmaster, D.R. and Heinrichs, A.J. (1996) A simple method for the analysis of particle sizes of forage and total mixed rations. J Dairy Sci 79, 922-928.
    • (1996) J Dairy Sci , vol.79 , pp. 922-928
    • Lammers, B.P.1    Buckmaster, D.R.2    Heinrichs, A.J.3
  • 26
    • 72849133578 scopus 로고    scopus 로고
    • Effects of sampling location and time, and host animal on assessment of bacterial diversity and fermentation parameters in the bovine rumen
    • Li, M., Penner, G.B., Hernandez-Sanabria, E., Oba, M. and Guan, L.L. (2009) Effects of sampling location and time, and host animal on assessment of bacterial diversity and fermentation parameters in the bovine rumen. J Appl Microbiol 107, 1924-1934.
    • (2009) J Appl Microbiol , vol.107 , pp. 1924-1934
    • Li, M.1    Penner, G.B.2    Hernandez-Sanabria, E.3    Oba, M.4    Guan, L.L.5
  • 27
    • 80052559901 scopus 로고    scopus 로고
    • Substitution of wheat dried distillers' grains with solubles for barley grain or barley silage in feedlot cattle diets: intake, digestibility and ruminal fermentation
    • Li, Y.L., McAllister, T.A., Beauchemin, K.A., He, M.L., McKinnon, J.J. and Yang, W.Z. (2011) Substitution of wheat dried distillers' grains with solubles for barley grain or barley silage in feedlot cattle diets: intake, digestibility and ruminal fermentation. J Anim Sci 89, 2491-2501.
    • (2011) J Anim Sci , vol.89 , pp. 2491-2501
    • Li, Y.L.1    McAllister, T.A.2    Beauchemin, K.A.3    He, M.L.4    McKinnon, J.J.5    Yang, W.Z.6
  • 28
    • 10744219802 scopus 로고    scopus 로고
    • Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria
    • Maeda, H., Fujimoto, C., Haruki, Y., Maeda, T., Kokeguchi, S., Petelin, M., Arai, H., Tanimoto, I. et al. (2003) Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria. FEMS Immunol Med Microbiol 39, 81-86.
    • (2003) FEMS Immunol Med Microbiol , vol.39 , pp. 81-86
    • Maeda, H.1    Fujimoto, C.2    Haruki, Y.3    Maeda, T.4    Kokeguchi, S.5    Petelin, M.6    Arai, H.7    Tanimoto, I.8
  • 29
    • 0028545587 scopus 로고
    • Microbial attachment and feed digestion in the rumen
    • McAllister, T.A., Bae, H.D., Jones, G.A. and Cheng, K.J. (1994) Microbial attachment and feed digestion in the rumen. J Anim Sci 72, 3004-3018.
    • (1994) J Anim Sci , vol.72 , pp. 3004-3018
    • McAllister, T.A.1    Bae, H.D.2    Jones, G.A.3    Cheng, K.J.4
  • 31
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E.C. and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59, 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 32
    • 34250817064 scopus 로고    scopus 로고
    • Ruminal acidosis in beef cattle: the current microbiological and nutritional outlook
    • Nagaraja, T.G. and Titgemeyer, E.C. (2007) Ruminal acidosis in beef cattle: the current microbiological and nutritional outlook. J Dairy Sci 90(Suppl 1), E17-E38.
    • (2007) J Dairy Sci , vol.90 , Issue.SUPPL. 1
    • Nagaraja, T.G.1    Titgemeyer, E.C.2
  • 33
    • 0031133979 scopus 로고    scopus 로고
    • Bovine acidosis: implications on laminitis
    • Nocek, J.E. (1997) Bovine acidosis: implications on laminitis. J Dairy Sci 80, 1005-1028.
    • (1997) J Dairy Sci , vol.80 , pp. 1005-1028
    • Nocek, J.E.1
  • 34
    • 0003702239 scopus 로고    scopus 로고
    • NRC. Washington, DC: National Academy Press
    • NRC (2000) Nutrient Requirements of Beef Cattle. Washington, DC: National Academy Press.
    • (2000) Nutrient Requirements of Beef Cattle
  • 35
    • 0033608222 scopus 로고    scopus 로고
    • Supplement strategies for ruminants and management of feeding to maximize utilization of roughages
    • Ørskov, E.R. (1999) Supplement strategies for ruminants and management of feeding to maximize utilization of roughages. Prev Vet Med 38, 179-185.
    • (1999) Prev Vet Med , vol.38 , pp. 179-185
    • Ørskov, E.R.1
  • 36
    • 33745895435 scopus 로고    scopus 로고
    • An evaluation of the accuracy and precision of a stand-alone submersible continuous ruminal pH measurement system
    • Penner, G.B., Beauchemin, K.A. and Mutsvangwa, T. (2006) An evaluation of the accuracy and precision of a stand-alone submersible continuous ruminal pH measurement system. J Dairy Sci 89, 2132-2140.
    • (2006) J Dairy Sci , vol.89 , pp. 2132-2140
    • Penner, G.B.1    Beauchemin, K.A.2    Mutsvangwa, T.3
  • 37
    • 35748959368 scopus 로고    scopus 로고
    • Severity of ruminal acidosis in primiparous holstein cows during the periparturient period
    • Penner, G.B., Beauchemin, K.A. and Mutsvangwa, T. (2007) Severity of ruminal acidosis in primiparous holstein cows during the periparturient period. J Dairy Sci 90, 365-375.
    • (2007) J Dairy Sci , vol.90 , pp. 365-375
    • Penner, G.B.1    Beauchemin, K.A.2    Mutsvangwa, T.3
  • 38
    • 69549105869 scopus 로고    scopus 로고
    • Epithelial capacity for apical uptake of short chain fatty acids is a key determinant for intraruminal pH and the susceptibility to subacute ruminal acidosis in sheep
    • Penner, G.B., Aschenbach, J.R., Gäbel, G., Rackwitz, R. and Oba, M. (2009) Epithelial capacity for apical uptake of short chain fatty acids is a key determinant for intraruminal pH and the susceptibility to subacute ruminal acidosis in sheep. J Nutr 139, 1714-1720.
    • (2009) J Nutr , vol.139 , pp. 1714-1720
    • Penner, G.B.1    Aschenbach, J.R.2    Gäbel, G.3    Rackwitz, R.4    Oba, M.5
  • 40
    • 0019573901 scopus 로고
    • Microbial rumen fermentation
    • Russell, J.B. and Hespell, R.B. (1981) Microbial rumen fermentation. J Dairy Sci 64, 1153-1169.
    • (1981) J Dairy Sci , vol.64 , pp. 1153-1169
    • Russell, J.B.1    Hespell, R.B.2
  • 41
    • 34247620908 scopus 로고    scopus 로고
    • Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR
    • Stevenson, D.M. and Weimer, P.J. (2007) Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR. Appl Microbiol Biotechnol 75, 165-174.
    • (2007) Appl Microbiol Biotechnol , vol.75 , pp. 165-174
    • Stevenson, D.M.1    Weimer, P.J.2
  • 42
    • 0035374841 scopus 로고    scopus 로고
    • Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR
    • Tajima, K., Aminov, R.I., Nagamine, T., Matsui, H., Nakamura, M. and Benno, Y. (2001) Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl Environ Microbiol 67, 2766-2774.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2766-2774
    • Tajima, K.1    Aminov, R.I.2    Nagamine, T.3    Matsui, H.4    Nakamura, M.5    Benno, Y.6
  • 43
    • 62249153290 scopus 로고    scopus 로고
    • Performance and digestibility characteristics of finishing diets containing distillers grains, composites of corn processing coproducts, or supplemental corn oil
    • Vander Pol, K.J., Luebbe, M.K., Crawford, G.I., Erickson, G.E. and Klopfenstein, T.J. (2009) Performance and digestibility characteristics of finishing diets containing distillers grains, composites of corn processing coproducts, or supplemental corn oil. J Anim Sci 87, 639-652.
    • (2009) J Anim Sci , vol.87 , pp. 639-652
    • Vander Pol, K.J.1    Luebbe, M.K.2    Crawford, G.I.3    Erickson, G.E.4    Klopfenstein, T.J.5
  • 44
    • 47149087503 scopus 로고    scopus 로고
    • Effect of monensin feeding and withdrawal on populations of individual bacterial species in the rumen of lactating dairy cows fed high-starch rations
    • Weimer, P., Stevenson, D., Mertens, D. and Thomas, E. (2008) Effect of monensin feeding and withdrawal on populations of individual bacterial species in the rumen of lactating dairy cows fed high-starch rations. Appl Microbiol Biotechnol 80, 135-145.
    • (2008) Appl Microbiol Biotechnol , vol.80 , pp. 135-145
    • Weimer, P.1    Stevenson, D.2    Mertens, D.3    Thomas, E.4
  • 45
    • 77951765065 scopus 로고    scopus 로고
    • ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle
    • Welkie, D.G., Stevenson, D.M. and Weimer, P.J. (2010) ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle. Anaerobe 16, 94-100.
    • (2010) Anaerobe , vol.16 , pp. 94-100
    • Welkie, D.G.1    Stevenson, D.M.2    Weimer, P.J.3
  • 46
    • 77955988747 scopus 로고    scopus 로고
    • Evaluation of triticale dried distillers grains with solubles as a substitute for barley grain and barley silage in feedlot finishing diets
    • Wierenga, K.T., McAllister, T.A., Gibb, D.J., Chaves, A.V., Okine, E.K., Beauchemin, K.A. and Oba, M. (2010) Evaluation of triticale dried distillers grains with solubles as a substitute for barley grain and barley silage in feedlot finishing diets. J Anim Sci 88, 3018-3029.
    • (2010) J Anim Sci , vol.88 , pp. 3018-3029
    • Wierenga, K.T.1    McAllister, T.A.2    Gibb, D.J.3    Chaves, A.V.4    Okine, E.K.5    Beauchemin, K.A.6    Oba, M.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.