As yet uncultured bacteria phylogenetically classified as Prevotella, Lachnospiraceae incertae sedis and unclassified Bacteroidales, Clostridiales and Ruminococcaceae may play a predominant role in ruminal biohydrogenation

Environmental Microbiology

Volumn 13, Issue 6, 2011, Pages 1500-1512

  Huws, Sharon A ^a   Kim, Eun J ^a   Lee, Michael R F ^a   Scott, Mark B ^a   Tweed, John K S ^a   Pinloche, Eric ^a   Wallace, R John ^b   Scollan, Nigel D ^a  

^a ABERYSTWYTH UNIVERSITY   (United Kingdom)

^b ROWETT RESEARCH INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CONJUGATED LINOLEIC ACID; FATTY ACID; FISH OIL; UNSATURATED FATTY ACID;

ANIMAL; ARTICLE; BACTEROIDETES; BUTYRIVIBRIO; CLASSIFICATION; DENATURING GRADIENT GEL ELECTROPHORESIS; GENETICS; HYDROGENATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PREVOTELLA; RUMINANT STOMACH;

ANIMALS; BACTEROIDETES; BASE SEQUENCE; BUTYRIVIBRIO; DENATURING GRADIENT GEL ELECTROPHORESIS; FATTY ACIDS; FATTY ACIDS, UNSATURATED; FISH OILS; HYDROGENATION; LINOLEIC ACIDS, CONJUGATED; MOLECULAR SEQUENCE DATA; PHYLOGENY; PREVOTELLA; RUMEN;

BACTERIA (MICROORGANISMS); BACTEROIDALES; BOVIDAE; BUTYRIVIBRIO; CLOSTRIDIALES; LACHNOSPIRACEAE; PREVOTELLA; UNCLASSIFIED BACTEROIDALES; UNCLASSIFIED CLOSTRIDIALES; UNCULTURED BACTERIUM;

EID: 79957979016     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2011.02452.x     Document Type: Article

References (40)

1. Boeckaert, C., Vlaeminck, B., Fievez, V., Maignien, L., Dijkstra, J., and Boon, N. (2008) Accumulation of trans C18:1 fatty acids in the rumen after dietary algal supplementation is associated with changes in the Butyrivibrio population. Appl Environ Microbiol 74: 6923-6930.
2. ter Braak, C.J.F., and Smilauer, P. (2002) CANOCO reference manual and CanoDraw for Windows User's guide: software for canonical community ordination (version 4.5). Microcomputer power (Ithaca, NY, USA).
3. Casamayor, E. M., Massana, R., Benlloch, S., Øreås, L., Díez, B., Goddard, V. J., etal. (2002) Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4: 338-348.
4. Cole, J. R., Chai, B., Farris, R. J., Wang, Q., Kulam, S. A., McGarrell, D. M., etal. (2005) The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33: D294-D296.
5. Edwards, J.E., Huws, S.A., Kim, E.J., and Kingston-Smith, A.H. (2007) Characterisation of the dynamics of initial bacterial colonisation of non-conserved (Fresh) forage in the rumen. FEMS Microbiol Ecol 62: 323-335.
6. Edwards, J. E., Huws, S. A., Kim, E. J., Lee, M. R. F., Kingston-Smith, A. H., and Scollan, N. D. (2008) Advances in microbial ecosystem concepts and their consequences for ruminant agriculture. Anim 2: 653-660.
7. Enwall, K., and Hallin, S. (2009) Comparison of T-RFLP and DGGE techniques to assess denitrifier community composition in soil. Lett Appl Microbiol 48: 145-148.
8. Felsenstein, J. (2004) PHYLIP - phylogeny inference package (Version 3.2). Cladistics 5: 164-166.
9. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
10. Harfoot, C.G., and Hazelwood, G.P. (1997) Lipid metabolism in the rumen. In The Rumen Microbial Ecosystem. Hobson, P.N., and Stewart, C.S. (eds). London, UK: Chapman & Hall, pp. 382-426.
11. Huws, S.A., Edwards, J.E., Kim, E.J., and Scollan, N.D. (2007) Specificity and sensitivity of bacterial primers utilized for molecular profiling of bacteria within complex microbial ecosystems. J Microbiol Methods 70: 565-569.
12. Huws, S.A., Lee, M.R.F., Muetzel, S.M., Scott, M.B., Wallace, R.J., and Scollan, N.D. (2010) Forage type and fish oil cause shifts in rumen bacterial diversity. FEMS Microbiol Ecol 73: 396-407.
13. Jarret, I.G. (1948) The production of rumen and abomasal fistulae in sheep. J Council Sci Ind Res 21: 311-315.
14. Jongman, R.H.G., ter Braak, C.J.F., and van Tongeren, O.F.R. (1987) Data Analysis in Community and Landscape Ecology. Wageningen, the Netherlands: Pudoc.
15. Kim, E.J., Huws, S.A., Lee, M.R.F., Wood, J.D., Muetzel, S.M., Wallace, R.J., and Scollan, N.D. (2008) Fish oil increases the duodenal flow of long chain polyunsaturated fatty acids and trans-11 18:1 and decreases 18:0 in steers via changes in the rumen bacterial community. J Nutr 138: 889-896.
16. Kopečný, J., Zorec, M., Mrázek, J., Kobayashi, Y., and Marinšek-Logar, R. (2003) Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen. Int J Syst Evol Microbiol 53: 201-209.
17. Kramer, J.K.G., and Zhou, J.Q. (2001) Conjugated linoleic acid and octadecenoic acids: extraction and isolation of lipids. Eur J Lipid Sci Technol 103: 594-600.
18. Lee, M.R.F., Harris, L.J., Moorby, J.M., Humphreys, M.O., Theodorou, M.K., MacRae, J.C., and Scollan, N.D. (2002) Rumen metabolism and nitrogen flow to the small intestine in steers offered Lolium perenne containing elevated levels of water-soluble carbohydrate. Anim Sci 74: 587-596.
19. Lee, M.R.F., Tweed, J.K.S., Moloney, A.P., and Scollan, N.D. (2005) The effects of fish oil supplementation on rumen metabolism and the biohydrogenation of unsaturated fatty acids in beef steers given diets containing sunflower oil. Anim Sci 80: 361-367.
20. Lee, M.R.F., Shingfield, K.J., Tweed, J.K.S., Toivonen, V., Huws, S.A., and Scollan, N.D. (2008) Effect of fish oil on ruminal biohydrogenation of C18 unsaturated fatty acids in steers fed grass or red clover silages. Anim 12: 1859-1869.
21. Lock, A.L., and Bauman, D.E. (2004) Modifying milk fat composition of dairy cows to enhance fatty acids beneficial to human health. Lipids 39: 1197-1206.
22. Loor, J.J., Ueda, K., Ferlay, A., Chilliard, Y., and Doreau, M. (2005) Intestinal flow and digestibility of trans fatty acids and conjugated linoleic acids (CLA) in dairy cows fed a high-concentrate diet supplemented with fish oil, linseed oil, or sunflower oil. Anim Feed Sci Technol 119: 203-225.
23. Lourenço, M., Ramos-Morales, E., and Wallace, R.J. (2010) The role of microbes in rumen lipolysis and biohydrogenation and their manipulation. Anim 4: 1008-1023.
24. Maia, M.R.G., Chaudhary, L.C., Figueres, L., and Wallace, R.J. (2007) Metabolism of polyunsaturated fatty acids and their toxicity to the microflora of the rumen. Antonie Van Leeuwenhoek 91: 303-314.
25. Maia, M.R.G., Chaudhary, L.C., Beswick, C.S., Richardson, A.J., McKain, N., Larson, T.R., etal. (2010) Toxicity of unsaturated fatty acids to the biohydrogenating ruminal bacterium, Butyrivibrio fibrisolvens. BMC Microbiol 10: 52-61.
26. Moon, C.D., Pacheco, D.M., Kelly, W.J., Leahy, S.C., Li, D., Kopecny, J., and Attwood, G.T. (2008) Reclassification of Clostridium proteoclasticum as Butyrivibrio proteoclasticus comb. nov., a butyrate-producing ruminal bacterium. Int J Syst Evol Microbiol 58: 2041-2045.
27. Nübel, U., Engelen, B., Felske, A., Snaidr, J., Wieshuber, A., Amann, R.I., etal. (1996) Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 178: 5636-5643.
28. Paillard, D., McKain, N., Chaudhary, L.C., Walker, N.D., Pizette, F., Koppova, I., etal. (2007) Relation between phylogenetic position, lipid metabolism and butyrate production by different Butyrivibrio-like bacteria from the rumen. Antonie Van Leeuwenhoek 91: 417-422.
29. Payne, R.W., Murray, D.A., Harding, S.A., Baird, D.B., and Soutar, D.M. (2006) GenStat® for Windows™ 9th Edition, Introduction. Hemel Hempstead, UK: VSN International.
30. Piperova, L.S., Sampugna, J., Teter, B.B., Kalscheur, K.F., Yurawecz, M.P., Ku, Y., etal. (2002) Duodenal and milk trans octadecenoic acid and conjugated linoleic acid (CLA) isomers indicate that postabsorptive synthesis is the predominant source of cis-9-containing CLA in lactating dairy cows. J Nutr 132: 1235-1241.
31. Sanguinetti, C.J., Neto, E.D., and Simpson, A.J.G. (1994) Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. BioTechniques 17: 914-921.
32. Scollan, N.D., Hocquette, J.-F., Nuernberg, K., Dannenberger, D., Richardson, I., and Moloney, A. (2006) Innovations in beef production systems that enhance the nutritional and health value of beef lipids and their relationship with meat quality. Meat Sci 74: 17-33.
33. Shingfield, K.J., Ahvenjarvi, S., Toivonen, V., Scollan, N.D., Arola, A., Nurmela, K.V.V., etal. (2003) Effect of dietary fish oil on biohydrogenation of fatty acids and milk fatty acid content in cows. Anim Sci 77: 165-179.
34. Shingfield, K.J., Lee, M.R.F., Humphries, D.J., Scollan, N.D., Toivonen, V., Reynolds, C.K., and Beever, D.E. (2010) Effect of incremental amounts of fish oil in the diet on ruminal lipid metabolism in growing steers. Br J Nutr 104: 56-66.
35. Shyu, C., Soule, T., Bent, S.J., Foster, J.A., and Forney, L.J. (2007) MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes. Microb Ecol 53: 562-570.
36. Sivakumaran, S., Molan, A.L., Meagher, L.P., Kolb, B., Foo, L.Y., Lane, G.A., etal. (2004) Variation in antimicrobial action of proanthocyanidins from Dorycnium rectum against rumen bacteria. Phytochemsitry 65: 2485-2497.
37. Smalla, K., Oros-Sichler, M., Milling, A., Heyer, H., Baumgarte, S., Becker, R., etal. (2007) Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: do the different methods provide similar results? J Microbiol Methods 69: 470-479.
38. Vasta, V., Yáñez-Ruiz, D.R., Mele, M., Serra, A., Luciano, G., Lanza, M., etal. (2010) Bacterial and protozoal communities and fatty acid profile in the rumen of sheep fed a diet containing added tannins. Appl Environ Microbiol 76: 2549-2555.
39. van de Vossenberg, J., and Joblin, K.N. (2003) Biohydrogenation of C18 unsaturated fatty acids to stearic acid by a strain of Butyrivibrio hungatei from the bovine rumen. Lett Appl Microbiol 37: 424-428.
40. Wallace, R.J., Chaudhary, L.C., McKain, N., McEwan, N.R., Richardson, A.J., Vercoe, P.E., etal. (2006) Clostridium proteoclasticum: a ruminal bacterium that forms stearic acid from linoleic acid. FEMS Microbiol Lett 265: 195-201.