-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R., Ludwig W., Schleifer K.-H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:1995;143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.1
Ludwig, W.2
Schleifer, K.-H.3
-
2
-
-
0024005650
-
Use of a phylogenetically based hybridization probe for studies of ruminal microbial ecology
-
Stahl D.A., Flesher B., Mansfield H.R., Montgomery L. Use of a phylogenetically based hybridization probe for studies of ruminal microbial ecology. Appl. Environ. Microbiol. 54:1988;1079-1084.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 1079-1084
-
-
Stahl, D.A.1
Flesher, B.2
Mansfield, H.R.3
Montgomery, L.4
-
3
-
-
0031892290
-
Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantitation of human faecal Bacteroides populations
-
Dore J., Sghir A., Hannequart-Gramet G., Corthier G., Pochart P. Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantitation of human faecal Bacteroides populations. Syst. Appl. Microbiol. 21:1998;64-71.
-
(1998)
Syst. Appl. Microbiol.
, vol.21
, pp. 64-71
-
-
Dore, J.1
Sghir, A.2
Hannequart-Gramet, G.3
Corthier, G.4
Pochart, P.5
-
4
-
-
0029900986
-
Human colonic biota studied by ribosomal DNA sequence analysis
-
Wilson K.H., Blitchington R.B. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62:1996;2273-2278.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2273-2278
-
-
Wilson, K.H.1
Blitchington, R.B.2
-
5
-
-
0002094193
-
Bacteria, fungi and protozoa of the rumen
-
(Mackie, R.I., White, B.A. and Isaacson, R.E., Eds.), Chapman and Hall, New York
-
Hespell, R.B., Akin, D.E. and Dehority, B.A. (1997) Bacteria, fungi and protozoa of the rumen. In: Gastrointestinal Microbiology (Mackie, R.I., White, B.A. and Isaacson, R.E., Eds.), Vol. 2, pp. 59-141. Chapman and Hall, New York.
-
(1997)
In: Gastrointestinal Microbiology
, vol.2
, pp. 59-141
-
-
Hespell, R.B.1
Akin, D.E.2
Dehority, B.A.3
-
6
-
-
0003342811
-
The rumen bacteria
-
(Hobson, P.N. and Stewart, C.S., Eds.), Blackie, London
-
Stewart, C.S., Flint, H.J. and Bryant, M.P. (1997) The rumen bacteria. In: The Rumen Microbial Ecosystem (Hobson, P.N. and Stewart, C.S., Eds.), pp. 10-72. Blackie, London.
-
(1997)
In: The Rumen Microbial Ecosystem
, pp. 10-72
-
-
Stewart, C.S.1
Flint, H.J.2
Bryant, M.P.3
-
7
-
-
0031816030
-
Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes
-
Whitford M.F., Forster R.J., Beard C.E., Gong J., Teather R.M. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe. 4:1998;153-163.
-
(1998)
Anaerobe
, vol.4
, pp. 153-163
-
-
Whitford, M.F.1
Forster, R.J.2
Beard, C.E.3
Gong, J.4
Teather, R.M.5
-
8
-
-
0032776213
-
Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries
-
Tajima K., Aminov R., Nagamine T., Ogata K., Nakamura M., Matsui H., Benno Y. Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries. FEMS Microbiol. Ecol. 29:1999;159-169.
-
(1999)
FEMS Microbiol. Ecol.
, vol.29
, pp. 159-169
-
-
Tajima, K.1
Aminov, R.2
Nagamine, T.3
Ogata, K.4
Nakamura, M.5
Matsui, H.6
Benno, Y.7
-
9
-
-
0023184331
-
Bacterial evolution
-
Woese C. Bacterial evolution. Microbiol. Rev. 51:1987;221-271.
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 221-271
-
-
Woese, C.1
-
10
-
-
0030202865
-
How many ruminal bacteria are there?
-
Krausse D.O., Russell J.B. How many ruminal bacteria are there? J. Dairy Sci. 79:1996;1467-1475.
-
(1996)
J. Dairy Sci.
, vol.79
, pp. 1467-1475
-
-
Krausse, D.O.1
Russell, J.B.2
-
11
-
-
0021824316
-
A phylogenetic grouping of bacteroides, cytophagas and certain flavobacteria
-
Paster B.J., Ludwig W., Weisburg W.G., Stackebrandt E., Hespell R.B., Hatan C.M., Reichenbach K., Stetter O., Woese C.R. A phylogenetic grouping of bacteroides, cytophagas and certain flavobacteria. Syst. Appl. Microbiol. 6:1985;34-42.
-
(1985)
Syst. Appl. Microbiol.
, vol.6
, pp. 34-42
-
-
Paster, B.J.1
Ludwig, W.2
Weisburg, W.G.3
Stackebrandt, E.4
Hespell, R.B.5
Hatan, C.M.6
Reichenbach, K.7
Stetter, O.8
Woese, C.R.9
-
12
-
-
0000240137
-
The genus Bacteroides and related taxa
-
(Balows, A., Truper, H.G., Dworkin, M., Harder, W. and Scheifer, K.-H., Eds.), Springer-Verlag, New York
-
Shah, H.N. (1992) The genus Bacteroides and related taxa. In: The Prokaryotes: A Handbook on the Biology of Bacteria, Isolation, Identification, Application, 2nd edn. (Balows, A., Truper, H.G., Dworkin, M., Harder, W. and Scheifer, K.-H., Eds.), pp. 3593-3607. Springer-Verlag, New York.
-
(1992)
In: The Prokaryotes: A Handbook on the Biology of Bacteria, Isolation, Identification, Application, 2nd Edn.
, pp. 3593-3607
-
-
Shah, H.N.1
-
13
-
-
0031691877
-
Estimation of the relative abundance of different Bacteroides and Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences
-
Wood J., Scott K.P., Avguštin G., Newbold C.J., Flint H.J. Estimation of the relative abundance of different Bacteroides and Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences. Appl. Environ. Microbiol. 64:1998;3683-3689.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3683-3689
-
-
Wood, J.1
Scott, K.P.2
Avguštin, G.3
Newbold, C.J.4
Flint, H.J.5
-
14
-
-
0002032609
-
Bacteroides ruminicola n. sp. and Succinomonas amylolytica, the new species and genus
-
Bryant M.P., Small N., Bouma C., Chu H. Bacteroides ruminicola n. sp. and Succinomonas amylolytica, the new species and genus. J. Bacteriol. 76:1958;15-23.
-
(1958)
J. Bacteriol.
, vol.76
, pp. 15-23
-
-
Bryant, M.P.1
Small, N.2
Bouma, C.3
Chu, H.4
-
16
-
-
0025198865
-
Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage based diets
-
van Gylswyk N.O. Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage based diets. FEMS Microbiol. Ecol. 73:1990;243-254.
-
(1990)
FEMS Microbiol. Ecol.
, vol.73
, pp. 243-254
-
-
Van Gylswyk, N.O.1
-
17
-
-
0025955787
-
Taxonomic relationships among strains of the anaerobic baterium Bacteroides ruminicola determined by DNA and extracellular polysaccharide analysis
-
Mannarelli B.M., Ericsson L.D., Stack R.J. Taxonomic relationships among strains of the anaerobic baterium Bacteroides ruminicola determined by DNA and extracellular polysaccharide analysis. Appl. Environ. Microbiol. 57:1991;2975-2980.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 2975-2980
-
-
Mannarelli, B.M.1
Ericsson, L.D.2
Stack, R.J.3
-
18
-
-
0028299632
-
Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen
-
Avguštin G., Wright F., Flint H. Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen. Int. J. Syst. Bacteriol. 44:1994;246-255.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 246-255
-
-
Avguštin, G.1
Wright, F.2
Flint, H.3
-
19
-
-
0043113323
-
Phenotypic diversity among ruminal isolates of Prevotella ruminicola: Proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola
-
Avguštin G., Wallace R.J., Flint H.J. Phenotypic diversity among ruminal isolates of Prevotella ruminicola: proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola. Int. J. Syst. Bacteriol. 47:1997;284-288.
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 284-288
-
-
Avguštin, G.1
Wallace, R.J.2
Flint, H.J.3
-
20
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Edn.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
22
-
-
0001857117
-
16S/23S rRNA sequencing
-
(Stackebrandt, E. and Goodfellow, M., Eds.), John Wiley and Sons, Chicester
-
Lane, D.J. (1991) 16S/23S rRNA sequencing. In: Nucleic Acids Techniques in Bacterial Systematics (Stackebrandt, E. and Goodfellow, M., Eds.), pp. 115-148. John Wiley and Sons, Chicester.
-
(1991)
In: Nucleic Acids Techniques in Bacterial Systematics
, pp. 115-148
-
-
Lane, D.J.1
-
23
-
-
9344247522
-
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
-
Manz W., Amann R., Ludwig W., Vancanneyt M., Schleifer K.-H. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Microbiology. 142:1996;1097-1106.
-
(1996)
Microbiology
, vol.142
, pp. 1097-1106
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Vancanneyt, M.4
Schleifer, K.-H.5
-
25
-
-
0029866211
-
The Ribosomal Database Project (RDP)
-
Maidak B.L., Olsen G.J., Larsen N., Overbeek R., McCaughey M.J., Woese C.R. The Ribosomal Database Project (RDP). Nucleic Acids Res. 24:1996;82-85.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 82-85
-
-
Maidak, B.L.1
Olsen, G.J.2
Larsen, N.3
Overbeek, R.4
McCaughey, M.J.5
Woese, C.R.6
-
26
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
27
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 85:(8):1988;2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, Issue.8
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
28
-
-
0026605537
-
Clustal V: Improved software for multiple sequence alignment
-
Higgins D.G., Bleasby A.J., Fuchs R. Clustal V: improved software for multiple sequence alignment. CABIOS. 8:1991;189-191.
-
(1991)
CABIOS
, vol.8
, pp. 189-191
-
-
Higgins, D.G.1
Bleasby, A.J.2
Fuchs, R.3
-
29
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
Thomson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thomson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
30
-
-
0025061094
-
Limitations of the evolutionary parsimony method of phylogenetic analysis
-
Jin L., Nei M. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol. Biol. Evol. 7:1990;82-102.
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 82-102
-
-
Jin, L.1
Nei, M.2
-
31
-
-
0023375195
-
The neighbour-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
32
-
-
0003437299
-
-
Distributed by the author. Department of Genetics, University of Washington, Seattle, WA
-
Felsenstein, J. (1993) PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle, WA.
-
(1993)
PHYLIP (Phylogeny Inference Package) Version 3.5c
-
-
Felsenstein, J.1
-
33
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
34
-
-
0343372261
-
Evolutionary relationships and the diversity of the rumen bacteria belonging to the Cytophaga-Flexibacter-Bacteroides phylum
-
Avguštin, G., Ramšak, A., Peterka, M., Nekrep, F.V. and Flint, H.J. (1997) Evolutionary relationships and the diversity of the rumen bacteria belonging to the Cytophaga-Flexibacter-Bacteroides phylum. Reprod. Nutr. Dev. Suppl., 27-28.
-
(1997)
Reprod. Nutr. Dev. Suppl.
, pp. 27-28
-
-
Avguštin, G.1
Ramšak, A.2
Peterka, M.3
Nekrep, F.V.4
Flint, H.J.5
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