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Volumn 24, Issue , 2013, Pages 12-19

Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing

Author keywords

16S rRNA genes; Pyrosequencing; Rumen; Subacute ruminal acidosis

Indexed keywords

BACTERIAL RNA; RNA 16S;

EID: 84884148911     PISSN: 10759964     EISSN: 10958274     Source Type: Journal    
DOI: 10.1016/j.anaerobe.2013.08.003     Document Type: Article
Times cited : (212)

References (44)
  • 2
    • 61449108191 scopus 로고    scopus 로고
    • Agrain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation
    • Khafipour E., Krause D.O., Plaizier J.C. Agrain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation. JDairy Sci 2009, 92:1060-1070.
    • (2009) JDairy Sci , vol.92 , pp. 1060-1070
    • Khafipour, E.1    Krause, D.O.2    Plaizier, J.C.3
  • 3
    • 32244438234 scopus 로고    scopus 로고
    • Understanding and preventing subacute ruminal acidosis in dairy herds: a review
    • Krause M.K., Oetzel G.R. Understanding and preventing subacute ruminal acidosis in dairy herds: a review. Anim Feed Sci Technol 2006, 26:215-236.
    • (2006) Anim Feed Sci Technol , vol.26 , pp. 215-236
    • Krause, M.K.1    Oetzel, G.R.2
  • 4
    • 0042308525 scopus 로고    scopus 로고
    • Across-sectional field study investigating the effect of periparturient dietary management on ruminal pH in early lactation dairy cows
    • Garrett E.F., Nordlund K.V., Goodger W.J., Oetzel G.R. Across-sectional field study investigating the effect of periparturient dietary management on ruminal pH in early lactation dairy cows. JDairy Sci 1997, 80(Suppl.1):169.
    • (1997) JDairy Sci , vol.80 , Issue.SUPPL.1 , pp. 169
    • Garrett, E.F.1    Nordlund, K.V.2    Goodger, W.J.3    Oetzel, G.R.4
  • 5
    • 77951212076 scopus 로고    scopus 로고
    • Prevalence of subacute ruminal acidosis in some dairy herds of Khorasan Razavi province northeast of Iran
    • Tajik J., Nadalian M.G., Raoofi A., Mohammadi G.R., Bahonar A.R. Prevalence of subacute ruminal acidosis in some dairy herds of Khorasan Razavi province northeast of Iran. Iranian J Vet Res 2009, 10:28-32.
    • (2009) Iranian J Vet Res , vol.10 , pp. 28-32
    • Tajik, J.1    Nadalian, M.G.2    Raoofi, A.3    Mohammadi, G.R.4    Bahonar, A.R.5
  • 7
    • 34250817064 scopus 로고    scopus 로고
    • Ruminal acidosis in beef cattle: the current microbiological and nutritional outlook
    • Nagaraja T.G., Titgemeyer E.C. Ruminal acidosis in beef cattle: the current microbiological and nutritional outlook. JDairy Sci 2007, 1:17-38.
    • (2007) JDairy Sci , vol.1 , pp. 17-38
    • Nagaraja, T.G.1    Titgemeyer, E.C.2
  • 8
    • 80054120056 scopus 로고    scopus 로고
    • Impact of subacute ruminal acidosis (SARA) adaptation and recovery on the density and diversity of bacteria in the rumen of dairy cows
    • Hook S.E., Steele M.A., Northwood K.S., Dijkstra J., France J., Wright A.D., et al. Impact of subacute ruminal acidosis (SARA) adaptation and recovery on the density and diversity of bacteria in the rumen of dairy cows. FEMS Microbiol Ecol 2011, 78:275-284.
    • (2011) FEMS Microbiol Ecol , vol.78 , pp. 275-284
    • Hook, S.E.1    Steele, M.A.2    Northwood, K.S.3    Dijkstra, J.4    France, J.5    Wright, A.D.6
  • 12
    • 63249131326 scopus 로고    scopus 로고
    • Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing
    • Callaway T.R., Dowd S.E., Wolcott R.D., Sun Y., McReynolds J.L., Edrington T.S., et al. Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing. Poult Sci 2009, 88:298-302.
    • (2009) Poult Sci , vol.88 , pp. 298-302
    • Callaway, T.R.1    Dowd, S.E.2    Wolcott, R.D.3    Sun, Y.4    McReynolds, J.L.5    Edrington, T.S.6
  • 13
    • 80052583902 scopus 로고    scopus 로고
    • Increased dietary zinc oxide changes the bacterial core and enterobacterial composition in the ileum of piglets
    • Vahjen W., Pieper R., Zentek J. Increased dietary zinc oxide changes the bacterial core and enterobacterial composition in the ileum of piglets. JAnim Sci 2011, 89:2430-2439.
    • (2011) JAnim Sci , vol.89 , pp. 2430-2439
    • Vahjen, W.1    Pieper, R.2    Zentek, J.3
  • 14
    • 77956868921 scopus 로고    scopus 로고
    • Evaluation of invitro gas production and rumen bacterial populations fermenting corn milling (co)products
    • Williams W.L., Tedeschi L.O., Kononoff P.J., Callaway T.R., Dowd S.E., Karges K., et al. Evaluation of invitro gas production and rumen bacterial populations fermenting corn milling (co)products. JDairy Sci 2010, 93:4735-4743.
    • (2010) JDairy Sci , vol.93 , pp. 4735-4743
    • Williams, W.L.1    Tedeschi, L.O.2    Kononoff, P.J.3    Callaway, T.R.4    Dowd, S.E.5    Karges, K.6
  • 15
    • 78649670032 scopus 로고    scopus 로고
    • Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing
    • Callaway T.R., Dowd S.E., Edrington T.S., Anderson R.C., Krueger N., Bauer N., et al. Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing. JAnim Sci 2010, 88:3977-3983.
    • (2010) JAnim Sci , vol.88 , pp. 3977-3983
    • Callaway, T.R.1    Dowd, S.E.2    Edrington, T.S.3    Anderson, R.C.4    Krueger, N.5    Bauer, N.6
  • 16
    • 77952497488 scopus 로고    scopus 로고
    • Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets
    • Pitta D.W., Pinchak E., Dowd S.E., Osterstock J., Gontcharova V., Youn E., et al. Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets. Microb Ecol 2010, 59:511-522.
    • (2010) Microb Ecol , vol.59 , pp. 511-522
    • Pitta, D.W.1    Pinchak, E.2    Dowd, S.E.3    Osterstock, J.4    Gontcharova, V.5    Youn, E.6
  • 18
    • 84855779542 scopus 로고    scopus 로고
    • Perturbation dynamics of the rumen microbiota in response to exogenous butyrate
    • Li R.W., Wu S., Baldwin R.L., Li W., Li C. Perturbation dynamics of the rumen microbiota in response to exogenous butyrate. PLoS One 2012, 7:e29392.
    • (2012) PLoS One , vol.7
    • Li, R.W.1    Wu, S.2    Baldwin, R.L.3    Li, W.4    Li, C.5
  • 19
    • 84858185944 scopus 로고    scopus 로고
    • Composition and similarity of bovine rumen microbiota across individual animals
    • Jami E., Mizrahi I. Composition and similarity of bovine rumen microbiota across individual animals. PLoS One 2012, 0:e33306.
    • (2012) PLoS One , vol.0
    • Jami, E.1    Mizrahi, I.2
  • 20
    • 84857287626 scopus 로고    scopus 로고
    • Influence of wet distillers grains diets on beef cattle fecal bacterial community structure
    • Rice W.C., Galyean M.L., Cox S.B., Dowd S.E., Cole N.A. Influence of wet distillers grains diets on beef cattle fecal bacterial community structure. BMC Microbiol 2012, 12-25.
    • (2012) BMC Microbiol , pp. 12-25
    • Rice, W.C.1    Galyean, M.L.2    Cox, S.B.3    Dowd, S.E.4    Cole, N.A.5
  • 21
    • 0015274860 scopus 로고
    • Pathogenesis of ruminant lactic acidosis
    • Dunlop R.H. Pathogenesis of ruminant lactic acidosis. Adv Vet Sci Comp Med 1972, 16:259-302.
    • (1972) Adv Vet Sci Comp Med , vol.16 , pp. 259-302
    • Dunlop, R.H.1
  • 23
    • 34247871421 scopus 로고    scopus 로고
    • Ruminal lipopolysaccharide concentration and inflammatory response during grain-induced subacute ruminal acidosis in dairy cows
    • Gozho G.N., Krause D.O., Plaizier J.C. Ruminal lipopolysaccharide concentration and inflammatory response during grain-induced subacute ruminal acidosis in dairy cows. JDairy Sci 2007, 90:856-866.
    • (2007) JDairy Sci , vol.90 , pp. 856-866
    • Gozho, G.N.1    Krause, D.O.2    Plaizier, J.C.3
  • 24
    • 0018706817 scopus 로고
    • Changes in lactate-producing and lactate-utilizing bacteria in relation to pH in the rumen of sheep during stepwise adaptation to a high-concentrate diet
    • Mackiem R.I., Gilchrist F.M.C. Changes in lactate-producing and lactate-utilizing bacteria in relation to pH in the rumen of sheep during stepwise adaptation to a high-concentrate diet. Appl Environ Microbiol 1979, 38:422-433.
    • (1979) Appl Environ Microbiol , vol.38 , pp. 422-433
    • Mackiem, R.I.1    Gilchrist, F.M.C.2
  • 25
    • 0028373375 scopus 로고
    • Effect of feeding regimen on concentration of free endotoxin in ruminal fluid of cattle
    • Andersen P.H., Bergelin B., Christensen K.A. Effect of feeding regimen on concentration of free endotoxin in ruminal fluid of cattle. JAnim Sci 1994, 72:487-491.
    • (1994) JAnim Sci , vol.72 , pp. 487-491
    • Andersen, P.H.1    Bergelin, B.2    Christensen, K.A.3
  • 26
    • 34247104539 scopus 로고    scopus 로고
    • Effect of disodium fumarate on invitro rumen fermentation of different substrates and rumen bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA
    • Mao S.Y., Zhang G., Zhu W.Y. Effect of disodium fumarate on invitro rumen fermentation of different substrates and rumen bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA. Asia-Austral J Anim Sci 2007, 20(4):543-549.
    • (2007) Asia-Austral J Anim Sci , vol.20 , Issue.4 , pp. 543-549
    • Mao, S.Y.1    Zhang, G.2    Zhu, W.Y.3
  • 27
    • 0000434447 scopus 로고
    • The colorimetric determination of lactic acid in biological material
    • Baker S.B., Summerson W.H. The colorimetric determination of lactic acid in biological material. JBiol Chem 1941, 138:535-555.
    • (1941) JBiol Chem , vol.138 , pp. 535-555
    • Baker, S.B.1    Summerson, W.H.2
  • 28
    • 84870417255 scopus 로고    scopus 로고
    • The diversity of the fecal bacterial community and its relationship with the concentration of volatile fatty acids in the feces during subacute rumen acidosis in dairy cows
    • Mao S., Zhang R., Wang D., Zhu W. The diversity of the fecal bacterial community and its relationship with the concentration of volatile fatty acids in the feces during subacute rumen acidosis in dairy cows. BMC Vet Res 2012, 6:237. 10.1186/1746-6148-8-237.
    • (2012) BMC Vet Res , vol.6 , pp. 237
    • Mao, S.1    Zhang, R.2    Wang, D.3    Zhu, W.4
  • 29
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E., Quast C., Knittel K., Fuchs B.M., Ludwig W., Peplies J., et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 2007, 35:7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6
  • 30
    • 0033173521 scopus 로고    scopus 로고
    • Effect of virginiamycin on ruminal fermentation in cattle during adaptation to a high concentrate diet and during an induced acidosis
    • Coe M.L., Nagaraja T.G., Sun Y.D., Wallace N., Towne E.G., Kemp K.E., et al. Effect of virginiamycin on ruminal fermentation in cattle during adaptation to a high concentrate diet and during an induced acidosis. JAnim Sci 1999, 77:2259-2268.
    • (1999) JAnim Sci , vol.77 , pp. 2259-2268
    • Coe, M.L.1    Nagaraja, T.G.2    Sun, Y.D.3    Wallace, N.4    Towne, E.G.5    Kemp, K.E.6
  • 31
    • 70449457268 scopus 로고    scopus 로고
    • Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis
    • Khafipour E., Li S., Plaizier J.C., Krause D.O. Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis. Appl Environ Microbiol 2009, l75:7115-7124.
    • (2009) Appl Environ Microbiol , vol.175 , pp. 7115-7124
    • Khafipour, E.1    Li, S.2    Plaizier, J.C.3    Krause, D.O.4
  • 32
    • 7244257504 scopus 로고    scopus 로고
    • An evaluation of parameters for the detection of subclinical rumen acidosis in dairy herds
    • Enemark J.M., Jorgensen R.J., Kristensen N.B. An evaluation of parameters for the detection of subclinical rumen acidosis in dairy herds. Vet Res Commun 2004, 28:687-709.
    • (2004) Vet Res Commun , vol.28 , pp. 687-709
    • Enemark, J.M.1    Jorgensen, R.J.2    Kristensen, N.B.3
  • 33
    • 33750586569 scopus 로고    scopus 로고
    • Rumen lipopolysaccharide and inflammation during grain adaptation and subacute ruminal acidosis in steers
    • Gozho G.N., Krause D.O., Plaizier J.C. Rumen lipopolysaccharide and inflammation during grain adaptation and subacute ruminal acidosis in steers. JDairy Sci 2006, 89:4404-4413.
    • (2006) JDairy Sci , vol.89 , pp. 4404-4413
    • Gozho, G.N.1    Krause, D.O.2    Plaizier, J.C.3
  • 34
    • 0036654503 scopus 로고    scopus 로고
    • Effects of bacterial direct-fed microbials on ruminal fermentation blood variables and the microbial populations of feedlot cattle
    • Ghorbani G.R., Morgavi D.P., Beauchemin K.A., Leedle J.A. Effects of bacterial direct-fed microbials on ruminal fermentation blood variables and the microbial populations of feedlot cattle. JAnim Sci 2002, 80:1977-1985.
    • (2002) JAnim Sci , vol.80 , pp. 1977-1985
    • Ghorbani, G.R.1    Morgavi, D.P.2    Beauchemin, K.A.3    Leedle, J.A.4
  • 35
    • 0031607267 scopus 로고    scopus 로고
    • Ruminal microbial and fermentative changes associated with experimentally induced subacute acidosis in steers
    • Goad D.W., Goad C.L., Nagaraja T.G. Ruminal microbial and fermentative changes associated with experimentally induced subacute acidosis in steers. JAnim Sci 1998, 76:234-241.
    • (1998) JAnim Sci , vol.76 , pp. 234-241
    • Goad, D.W.1    Goad, C.L.2    Nagaraja, T.G.3
  • 37
    • 77749334332 scopus 로고    scopus 로고
    • Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis
    • Bekele A.Z., Koike S., Kobayashi Y. Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis. FEMS Microbiol Lett 2010, 305:49-57.
    • (2010) FEMS Microbiol Lett , vol.305 , pp. 49-57
    • Bekele, A.Z.1    Koike, S.2    Kobayashi, Y.3
  • 38
    • 0018306726 scopus 로고
    • Isolation and characterization of large treponemes from the bovine rumen
    • Ziołecki A. Isolation and characterization of large treponemes from the bovine rumen. Appl Environ Microbiol 1979, 37:131-135.
    • (1979) Appl Environ Microbiol , vol.37 , pp. 131-135
    • Ziołecki, A.1
  • 39
    • 0014658015 scopus 로고
    • Bifidbacteria in bovine rumen new species of the genus Bifidobacterium: B.globosum n.sp. and B.ruminale n.sp
    • Scardovi V., Trovatelli L.D., Crociani F., Sgorbati B. Bifidbacteria in bovine rumen new species of the genus Bifidobacterium: B.globosum n.sp. and B.ruminale n.sp. Arch Mikrobiol 1969, 68:278-294.
    • (1969) Arch Mikrobiol , vol.68 , pp. 278-294
    • Scardovi, V.1    Trovatelli, L.D.2    Crociani, F.3    Sgorbati, B.4
  • 40
    • 0017102381 scopus 로고
    • Presence of bifidobacteria in the rumen of calves fed different rations
    • Trovatelli L.D., Matteuzzi D. Presence of bifidobacteria in the rumen of calves fed different rations. Appl Environ Microbiol 1967, l32:470-473.
    • (1967) Appl Environ Microbiol , vol.132 , pp. 470-473
    • Trovatelli, L.D.1    Matteuzzi, D.2
  • 41
    • 0017760481 scopus 로고
    • Biochemical and biological studies on lipopolysaccharide of bacteroides-nodosus
    • Stewart D.J. Biochemical and biological studies on lipopolysaccharide of bacteroides-nodosus. Res Vet Sci 1977, 23:319-325.
    • (1977) Res Vet Sci , vol.23 , pp. 319-325
    • Stewart, D.J.1
  • 42
    • 0033781871 scopus 로고    scopus 로고
    • Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups
    • Harmsen H.J., Wildeboer-Veloo A.C., Grijpstra J., Knol J., Degener J.E., Welling G.W. Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups. Appl Environ Microbiol 2000, 66:4523-4527.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4523-4527
    • Harmsen, H.J.1    Wildeboer-Veloo, A.C.2    Grijpstra, J.3    Knol, J.4    Degener, J.E.5    Welling, G.W.6
  • 43
    • 80052627204 scopus 로고    scopus 로고
    • Changes in bacterial diversity associated with epithelial tissue in the beef cow rumen during thetransition to a high-grain diet
    • Chen Y., Penner G.B., Li M., Oba M., Guan L.L. Changes in bacterial diversity associated with epithelial tissue in the beef cow rumen during thetransition to a high-grain diet. Appl Environ Microbiol 2011, l77:5770-5781.
    • (2011) Appl Environ Microbiol , vol.177 , pp. 5770-5781
    • Chen, Y.1    Penner, G.B.2    Li, M.3    Oba, M.4    Guan, L.L.5
  • 44
    • 0030202660 scopus 로고    scopus 로고
    • Why do many ruminal bacteria die and lyse so quickly?
    • Wells J.E., Russell J.B. Why do many ruminal bacteria die and lyse so quickly?. JDairy Sci 1996, 79:1487-1495.
    • (1996) JDairy Sci , vol.79 , pp. 1487-1495
    • Wells, J.E.1    Russell, J.B.2


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