-
1
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann RD, Adams MD, White O, et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995;269:496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
-
2
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser CM, Gocayne JD, White O, et al. The minimal gene complement of Mycoplasma genitalium. Science 1995;270: 397-403.
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Gocayne, J.D.2
White, O.3
-
3
-
-
0025283215
-
Automated DNA sequencing of the human HPRT locus
-
Edwards A, Voss H, Rice P, etal. Automated DNA sequencing of the human HPRT locus. Genomics 1990;6:593-608.
-
(1990)
Genomics
, vol.6
, pp. 593-608
-
-
Edwards, A.1
Voss, H.2
Rice, P.3
-
4
-
-
0028987725
-
Pairwise end sequencing: a unified approach to genomic mapping and sequencing
-
Roach JC, Boysen C, Wang K, et al. Pairwise end sequencing: a unified approach to genomic mapping and sequencing. Genomics 1995;26:345-53.
-
(1995)
Genomics
, vol.26
, pp. 345-353
-
-
Roach, J.C.1
Boysen, C.2
Wang, K.3
-
5
-
-
0030950735
-
Human whole-genome shotgun sequencing
-
Weber JL, Myers EW. Human whole-genome shotgun sequencing. GenomeRes 1997;7:401-9.
-
(1997)
GenomeRes
, vol.7
, pp. 401-409
-
-
Weber, J.L.1
Myers, E.W.2
-
6
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
Kunst F, Ogasawara N, Moszer I, et al. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 1997;390:249-56.
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
-
7
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner FR, Plunkett G, Bloch CA, et al. The complete genome sequence of Escherichia coli K-12. Science 1997;277: 1453-74.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
-
8
-
-
0031994483
-
[The yeast genome]
-
Goffeau A. [The yeast genome]. Pathol Biol (Paris) 1998;46: 96-7.
-
(1998)
Pathol Biol (Paris)
, vol.46
, pp. 96-97
-
-
Goffeau, A.1
-
9
-
-
0032509302
-
Genome sequence of the nematode C. elegans: a platform for investigating biology
-
C. elegans sequencing Consortium
-
C. elegans sequencing Consortium. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 1998;282:2012-8.
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
10
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000;408:796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
11
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers EW, Sutton GG, Delcher AL, etal. A whole-genome assembly of Drosophila. Science 2000;287:2196-204.
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
Sutton, G.G.2
Delcher, A.L.3
-
12
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature 2001;409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
13
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, et al. The sequence of the human genome. Science 2001;291:1304-51.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
-
14
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker ML. Sequencing technologies-the next generation. Nat Rev Genet 2010;11:31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
16
-
-
52949096084
-
Next-generation DNA sequencing methods
-
Mardis ER. Next-generation DNA sequencing methods. Annu RevGenomicsHum Genet 2008;9:387-402.
-
(2008)
Annu RevGenomicsHum Genet
, vol.9
, pp. 387-402
-
-
Mardis, E.R.1
-
17
-
-
28844463698
-
Emerging technologies in DNA sequencing
-
Metzker ML. Emerging technologies in DNA sequencing. Genome Res 2005;15:1767-76.
-
(2005)
Genome Res
, vol.15
, pp. 1767-1776
-
-
Metzker, M.L.1
-
18
-
-
67650447476
-
Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream
-
Kyrpides NC. Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. Nat Biotechnol 2009; 27:627-32.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 627-632
-
-
Kyrpides, N.C.1
-
19
-
-
54949159260
-
Time to remove the model organism blinkers
-
Parkhill J. Time to remove the model organism blinkers. Trends Microbiol 2008;16:510-1.
-
(2008)
Trends Microbiol
, vol.16
, pp. 510-511
-
-
Parkhill, J.1
-
21
-
-
28544440749
-
An analysis of the feasibility of short read sequencing
-
Whiteford N, Haslam N, Weber G, et al. An analysis of the feasibility of short read sequencing. Nucleic Acids Res 2005; 33:e171.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Whiteford, N.1
Haslam, N.2
Weber, G.3
-
22
-
-
77955385735
-
Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies
-
Cahill MJ, Köser CU, Ross NE, et al. Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies. PLoS One 2010; 5:e11518.
-
(2010)
PLoS One
, vol.5
-
-
Cahill, M.J.1
Köser, C.U.2
Ross, N.E.3
-
23
-
-
70449701942
-
Sense from sequence reads: methods for alignment and assembly
-
Flicek P, Birney E. Sense from sequence reads: methods for alignment and assembly. Nat Methods 2009;6: S6-S12.
-
(2009)
Nat Methods
, vol.6
-
-
Flicek, P.1
Birney, E.2
-
24
-
-
67449095888
-
Genome assembly reborn: recent computational challenges
-
Pop M. Genome assembly reborn: recent computational challenges. Brief Bioinformatics 2009;10:354-66.
-
(2009)
Brief Bioinformatics
, vol.10
, pp. 354-366
-
-
Pop, M.1
-
25
-
-
59949093527
-
De novo fragment assembly with short mate-paired reads: does the read length matter?
-
Chaisson MJ, Brinza D, Pevzner PA. De novo fragment assembly with short mate-paired reads: does the read length matter? Genome Res 2009;19:336-46.
-
(2009)
Genome Res
, vol.19
, pp. 336-346
-
-
Chaisson, M.J.1
Brinza, D.2
Pevzner, P.A.3
-
26
-
-
79953187986
-
Helicobacter pylori genome evolution during human infection
-
Kennemann L, Didelot X, Aebischer T, et al. Helicobacter pylori genome evolution during human infection. Proc Natl Acad SciUSA 2011;108:5033-8.
-
(2011)
Proc Natl Acad SciUSA
, vol.108
, pp. 5033-5038
-
-
Kennemann, L.1
Didelot, X.2
Aebischer, T.3
-
27
-
-
77957866587
-
Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing
-
Chen PE, Willner KM, Butani A, et al. Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing. PLoS One 2010;5:e12397.
-
(2010)
PLoS One
, vol.5
-
-
Chen, P.E.1
Willner, K.M.2
Butani, A.3
-
29
-
-
48349124258
-
High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi
-
Holt KE, Parkhill J, Mazzoni CJ, et al. High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi. Nat Genet 2008;40:987-93.
-
(2008)
Nat Genet
, vol.40
, pp. 987-993
-
-
Holt, K.E.1
Parkhill, J.2
Mazzoni, C.J.3
-
30
-
-
79955460244
-
Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
-
Ford CB, Lin PL, Chase MR, et al. Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection. NatGenet 2011;43:482-6.
-
(2011)
NatGenet
, vol.43
, pp. 482-486
-
-
Ford, C.B.1
Lin, P.L.2
Chase, M.R.3
-
31
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005;437:376-80.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
-
33
-
-
39649084637
-
Bioinformatics challenges of new sequencing technology
-
Pop M, Salzberg SL. Bioinformatics challenges of new sequencing technology. TrendsGenet 2008;24:142-9.
-
(2008)
TrendsGenet
, vol.24
, pp. 142-149
-
-
Pop, M.1
Salzberg, S.L.2
-
34
-
-
0035232164
-
Fragment assembly with doublebarreled data
-
Pevzner PA, Tang H. Fragment assembly with doublebarreled data. Bioinformatics 2001;17(Suppl 1):S225-S233.
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL 1
-
-
Pevzner, P.A.1
Tang, H.2
-
35
-
-
34547312505
-
Shotgun sequence assembly
-
Pop M. Shotgun sequence assembly. Adv Comput 2004;60: 193-248.
-
(2004)
Adv Comput
, vol.60
, pp. 193-248
-
-
Pop, M.1
-
36
-
-
33746605947
-
A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes
-
Goldberg SMD, Johnson J, Busam D, et al. A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. ProcNatl Acad SciUSA 2006;103:11240-5.
-
(2006)
ProcNatl Acad SciUSA
, vol.103
, pp. 11240-11245
-
-
Goldberg, S.M.D.1
Johnson, J.2
Busam, D.3
-
37
-
-
77956279237
-
Assembly of large genomes using second-generation sequencing
-
Schatz MC, Delcher AL, Salzberg SL. Assembly of large genomes using second-generation sequencing. Genome Res 2010;20:1165-73.
-
(2010)
Genome Res
, vol.20
, pp. 1165-1173
-
-
Schatz, M.C.1
Delcher, A.L.2
Salzberg, S.L.3
-
38
-
-
39049156065
-
Short read fragment assembly of bacterial genomes
-
Chaisson MJ, Pevzner PA. Short read fragment assembly of bacterial genomes. GenomeRes 2008;18:324-30.
-
(2008)
GenomeRes
, vol.18
, pp. 324-330
-
-
Chaisson, M.J.1
Pevzner, P.A.2
-
39
-
-
58349105386
-
High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
-
Aury J-M, Cruaud C, Barbe V, et al. High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. BMCGenomics 2008;9:603.
-
(2008)
BMCGenomics
, vol.9
, pp. 603
-
-
Aury, J.-M.1
Cruaud, C.2
Barbe, V.3
-
40
-
-
84863664355
-
A hybrid approach for the automated finishing of bacterial genomes
-
Bashir A, Klammer AA, Robins WP, et al. A hybrid approach for the automated finishing of bacterial genomes. Nat Biotechnol 2012;30:701-7.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 701-707
-
-
Bashir, A.1
Klammer, A.A.2
Robins, W.P.3
-
41
-
-
79959723260
-
Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study
-
Cerdeira LT, Carneiro AR, Ramos RTJ, et al. Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study. JMicrobiolMethods 2011;86:218-23.
-
(2011)
JMicrobiolMethods
, vol.86
, pp. 218-223
-
-
Cerdeira, L.T.1
Carneiro, A.R.2
Ramos, R.T.J.3
-
42
-
-
80052211950
-
Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts
-
Forde BM, Neville B, O'Donnell MM, et al. Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts. Microbial Cell Factories 2011;10:S13.
-
(2011)
Microbial Cell Factories
, vol.10
-
-
Forde, B.M.1
Neville, B.2
O'Donnell, M.M.3
-
43
-
-
59949090259
-
De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv
-
Reinhardt JA, Baltrus DA, Nishimura MT, et al. De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. GenomeRes 2009;19:294-305.
-
(2009)
oryzae. GenomeRes
, vol.19
, pp. 294-305
-
-
Reinhardt, J.A.1
Baltrus, D.A.2
Nishimura, M.T.3
-
44
-
-
71449100076
-
Mapping the tree of life: progress and prospects
-
Pace NR. Mapping the tree of life: progress and prospects. MicrobiolMol Biol Rev 2009;73:565-76.
-
(2009)
MicrobiolMol Biol Rev
, vol.73
, pp. 565-576
-
-
Pace, N.R.1
-
45
-
-
46449124442
-
A diversity profile of the human skin microbiota
-
Grice EA, Kong HH, Renaud G, et al. A diversity profile of the human skin microbiota. Genome Res 2008;18: 1043-50.
-
(2008)
Genome Res
, vol.18
, pp. 1043-1050
-
-
Grice, E.A.1
Kong, H.H.2
Renaud, G.3
-
46
-
-
33645865842
-
Identification of dominant bacteria in feces and colonic mucosa from healthy Spanish adults by culturing and by 16S rDNA sequence analysis
-
Delgado S, Suárez A, Mayo B. Identification of dominant bacteria in feces and colonic mucosa from healthy Spanish adults by culturing and by 16S rDNA sequence analysis. Dig Dis Sci 2006;51:744-51.
-
(2006)
Dig Dis Sci
, vol.51
, pp. 744-751
-
-
Delgado, S.1
Suárez, A.2
Mayo, B.3
-
47
-
-
0036185771
-
Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis
-
Hold GL, Pryde SE, Russell VJ, et al. Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis. FEMS Microbiol Ecol 2002;39: 33-9.
-
(2002)
FEMS Microbiol Ecol
, vol.39
, pp. 33-39
-
-
Hold, G.L.1
Pryde, S.E.2
Russell, V.J.3
-
48
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 2004;304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
-
49
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 2004; 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
-
50
-
-
0033151643
-
Ribosomal DNA sequencing as a tool for identification of bacterial pathogens
-
Kolbert CP, Persing DH. Ribosomal DNA sequencing as a tool for identification of bacterial pathogens. Curr Opin Microbiol 1999;2:299-305.
-
(1999)
Curr Opin Microbiol
, vol.2
, pp. 299-305
-
-
Kolbert, C.P.1
Persing, D.H.2
-
51
-
-
34548696115
-
16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls
-
Janda JM, Abbott SL. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. JClinMicrobiol 2007;45:2761-4.
-
(2007)
JClinMicrobiol
, vol.45
, pp. 2761-2764
-
-
Janda, J.M.1
Abbott, S.L.2
-
52
-
-
34548671168
-
DNA pyrosequencing- based bacterial pathogen identification in a pediatric hospital setting
-
Luna RA, Fasciano LR, Jones SC, et al. DNA pyrosequencing- based bacterial pathogen identification in a pediatric hospital setting. JClinMicrobiol 2007;45:2985-92.
-
(2007)
JClinMicrobiol
, vol.45
, pp. 2985-2992
-
-
Luna, R.A.1
Fasciano, L.R.2
Jones, S.C.3
-
53
-
-
65949108590
-
Metagenomic pyrosequencing and microbial identification
-
Petrosino JF, Highlander S, Luna RA, et al. Metagenomic pyrosequencing and microbial identification. Clin Chem 2009;55:856-66.
-
(2009)
Clin Chem
, vol.55
, pp. 856-866
-
-
Petrosino, J.F.1
Highlander, S.2
Luna, R.A.3
-
54
-
-
57649184474
-
Genome-scale analyses of health-promoting bacteria: probiogenomics
-
Ventura M, O'Flaherty S, Claesson MJ, et al. Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat RevMicrobiol 2009;7:61-71.
-
(2009)
Nat RevMicrobiol
, vol.7
, pp. 61-71
-
-
Ventura, M.1
O'Flaherty, S.2
Claesson, M.J.3
-
55
-
-
69249109724
-
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
-
Claesson MJ, O'Sullivan O, Wang Q, et al. Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS One 2009;4:e6669.
-
(2009)
PLoS One
, vol.4
-
-
Claesson, M.J.1
O'Sullivan, O.2
Wang, Q.3
-
56
-
-
78650453707
-
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
-
Claesson MJ, Wang Q, O'Sullivan O, et al. Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res 2010;38: e200.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Claesson, M.J.1
Wang, Q.2
O'Sullivan, O.3
-
57
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso JG, Lauber CL, Walters WA, et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A 2011; 108(Suppl):4516-22.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.SUPPL
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
-
58
-
-
84355163066
-
Illumina-based analysis of microbial community diversity
-
Degnan PH, Ochman H. Illumina-based analysis of microbial community diversity. ISMEJ 2012;6:183-94.
-
(2012)
ISMEJ
, vol.6
, pp. 183-194
-
-
Degnan, P.H.1
Ochman, H.2
-
60
-
-
84867741260
-
Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates
-
Bowen JL, Morrison HG, Hobbie JE, et al. Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates. ISME J 2012;6:2014-23.
-
(2012)
ISME J
, vol.6
, pp. 2014-2023
-
-
Bowen, J.L.1
Morrison, H.G.2
Hobbie, J.E.3
-
61
-
-
84864722033
-
Gut microbiota composition correlates with diet and health in the elderly
-
Claesson MJ, Jeffery IB, Conde S, et al. Gut microbiota composition correlates with diet and health in the elderly. Nature 2012;488:178-84.
-
(2012)
Nature
, vol.488
, pp. 178-184
-
-
Claesson, M.J.1
Jeffery, I.B.2
Conde, S.3
-
63
-
-
84861653143
-
Changes in the intestinal microbiota from adulthood through to old age
-
O'Toole PW. Changes in the intestinal microbiota from adulthood through to old age. Clin Microbiol Infect 2012; 18(Suppl 4):44-6.
-
(2012)
Clin Microbiol Infect
, vol.18
, Issue.SUPPL 4
, pp. 44-46
-
-
O'Toole, P.W.1
-
64
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, et al. A core gut microbiome in obese and lean twins. Nature 2009;457: 480-4.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
-
65
-
-
79952201936
-
Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health
-
Crielaard W, Zaura E, Schuller AA, et al. Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health. BMCMed Genomics 2011;4:22.
-
(2011)
BMCMed Genomics
, vol.4
, pp. 22
-
-
Crielaard, W.1
Zaura, E.2
Schuller, A.A.3
-
66
-
-
79958768051
-
Skin microbiome: genomics-based insights into the diversity and role of skin microbes
-
Kong HH. Skin microbiome: genomics-based insights into the diversity and role of skin microbes. TrendsMolMed 2011; 17:320-8.
-
(2011)
TrendsMolMed
, vol.17
, pp. 320-328
-
-
Kong, H.H.1
-
67
-
-
84862209519
-
A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy
-
Aagaard K, Riehle K, Ma J, et al. A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy. PLoS One 2012;7:e36466.
-
(2012)
PLoS One
, vol.7
-
-
Aagaard, K.1
Riehle, K.2
Ma, J.3
-
68
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg PB, Bik EM, Bernstein CN, et al. Diversity of the human intestinal microbial flora. Science 2005;308:1635-8.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
-
69
-
-
84862162269
-
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
-
Segata N, Haake SK, Mannon P, et al. Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol 2012;13:R42.
-
(2012)
Genome Biol
, vol.13
-
-
Segata, N.1
Haake, S.K.2
Mannon, P.3
-
70
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
The Human Microbiome Project consortium.
-
The Human Microbiome Project consortium. Structure, function and diversity of the healthy human microbiome. Nature 2012;486:207-14.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
71
-
-
33845901507
-
Microbial ecology: human gut microbes associated with obesity
-
Ley RE, Turnbaugh PJ, Klein S, et al. Microbial ecology: human gut microbes associated with obesity. Nature 2006; 444:1022-3.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
-
72
-
-
84861578319
-
An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota
-
Jeffery IB, O'Toole PW, öhman L, et al. An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota. Gut 2012;61:997-1006.
-
(2012)
Gut
, vol.61
, pp. 997-1006
-
-
Jeffery, I.B.1
O'Toole, P.W.2
Öhman, L.3
-
73
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
-
Yooseph S, Sutton G, Rusch DB, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol 2007;5:e16.
-
(2007)
PLoS Biol
, vol.5
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
-
74
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010;464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
-
75
-
-
84863022950
-
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
-
Kostic AD, Gevers D, Pedamallu CS, etal. Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Res 2012;22:292-8.
-
(2012)
Genome Res
, vol.22
, pp. 292-298
-
-
Kostic, A.D.1
Gevers, D.2
Pedamallu, C.S.3
-
76
-
-
77950670562
-
Altered profiles of intestinal microbiota and organic acids may be the origin of symptoms in irritable bowel syndrome
-
e114-e115
-
Tana C, Umesaki Y, Imaoka A, et al. Altered profiles of intestinal microbiota and organic acids may be the origin of symptoms in irritable bowel syndrome. Neurogastroenterol Motil 2010;22:512-9, e114-5.
-
(2010)
Neurogastroenterol Motil
, vol.22
, pp. 512-519
-
-
Tana, C.1
Umesaki, Y.2
Imaoka, A.3
-
77
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh PJ, Ley RE, Mahowald MA, et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006;444:1027-31.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
-
78
-
-
57249113908
-
Helicobacter pylori and esophageal cancer risk: a meta-analysis
-
Islami F, Kamangar F. Helicobacter pylori and esophageal cancer risk: a meta-analysis. Cancer Prevent Res 2008;1: 329-38.
-
(2008)
Cancer Prevent Res
, vol.1
, pp. 329-338
-
-
Islami, F.1
Kamangar, F.2
-
79
-
-
34247547360
-
Inverse associations of Helicobacter pylori with asthma and allergy
-
Chen Y, Blaser MJ. Inverse associations of Helicobacter pylori with asthma and allergy. Arch IntMed 2007;167:821-7.
-
(2007)
Arch IntMed
, vol.167
, pp. 821-827
-
-
Chen, Y.1
Blaser, M.J.2
-
80
-
-
50549099726
-
Substantial alterations of the cutaneous bacterial biota in psoriatic lesions
-
Gao Z, Tseng C, Strober BE, et al. Substantial alterations of the cutaneous bacterial biota in psoriatic lesions. PLoS One 2008;3:e2719.
-
(2008)
PLoS One
, vol.3
-
-
Gao, Z.1
Tseng, C.2
Strober, B.E.3
-
81
-
-
79953733693
-
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
-
Wang Z, Klipfell E, Bennett BJ, et al. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 2011;472:57-63.
-
(2011)
Nature
, vol.472
, pp. 57-63
-
-
Wang, Z.1
Klipfell, E.2
Bennett, B.J.3
-
82
-
-
84862286169
-
A framework for human microbiome research
-
The Human Microbiome Project consortium
-
The Human Microbiome Project consortium. A framework for human microbiome research. Nature 2012;486:215-21.
-
(2012)
Nature
, vol.486
, pp. 215-221
-
-
-
84
-
-
84861001724
-
Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition.
-
Li E, Hamm CM, Gulati AS, et al. Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition. PLoS One 2012;7:e26284.
-
(2012)
PLoS One
, vol.7
-
-
Li, E.1
Hamm, C.M.2
Gulati, A.S.3
-
85
-
-
2942560683
-
Benefits and pitfalls of using microarrays to monitor bacterial gene expression during infection
-
Hinton JCD, Hautefort I, Eriksson S, et al. Benefits and pitfalls of using microarrays to monitor bacterial gene expression during infection. Curr Opin Microbiol 2004;7: 277-82.
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 277-282
-
-
Hinton, J.C.D.1
Hautefort, I.2
Eriksson, S.3
-
86
-
-
33746361200
-
Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
-
Okoniewski MJ, Miller CJ. Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations. BMC Bioinformatics 2006;7:276.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 276
-
-
Okoniewski, M.J.1
Miller, C.J.2
-
87
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009;10: 57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
88
-
-
70949102952
-
Next generation sequencing of microbial transcriptomes: challenges and opportunities
-
van Vliet AHM. Next generation sequencing of microbial transcriptomes: challenges and opportunities. FEMS Microbiol Lett 2010;302:1-7.
-
(2010)
FEMS Microbiol Lett
, vol.302
, pp. 1-7
-
-
van Vliet, A.H.M.1
-
89
-
-
0023948705
-
Mapping protein- DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene
-
Solomon MJ, Larsen PL, Varshavsky A. Mapping protein- DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene. Cell 1988;53:937-47.
-
(1988)
Cell
, vol.53
, pp. 937-947
-
-
Solomon, M.J.1
Larsen, P.L.2
Varshavsky, A.3
-
90
-
-
38449114551
-
Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation
-
Collas P, Dahl JA. Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation. Frontiers Biosci 2008;13:929-43.
-
(2008)
Frontiers Biosci
, vol.13
, pp. 929-943
-
-
Collas, P.1
Dahl, J.A.2
-
91
-
-
70349352030
-
ChIP on chip assays: genome-wide analysis of transcription factor binding and histone modifications
-
Pillai S, Chellappan SP. ChIP on chip assays: genome-wide analysis of transcription factor binding and histone modifications. MethodsMol Biol 2009;523:341-66.
-
(2009)
MethodsMol Biol
, vol.523
, pp. 341-366
-
-
Pillai, S.1
Chellappan, S.P.2
-
92
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B, Robert F, Wyrick JJ, et al. Genome-wide location and function of DNA binding proteins. Science 2000;290: 2306-9.
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
-
93
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen TS, Ku M, Jaffe DB, et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007;448:553-60.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
-
94
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, et al. Genome-wide mapping of in vivo protein-DNA interactions. Science 2007;316:1497-502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
-
95
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson G, Hirst M, Bainbridge M, et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. NatMethods 2007;4:651-7.
-
(2007)
NatMethods
, vol.4
, pp. 651-657
-
-
Robertson, G.1
Hirst, M.2
Bainbridge, M.3
-
96
-
-
70349312354
-
ChIP-seq: advantages and challenges of a maturing technology
-
Park PJ. ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet 2009;10:669-80.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
97
-
-
80053581966
-
An extracytoplasmic function sigma factor-mediated cell surface signaling system in Pseudomonas syringae pv. tomato DC3000 regulates gene expression in response to heterologous siderophores.
-
Markel E, Maciak C, Butcher BG, et al. An extracytoplasmic function sigma factor-mediated cell surface signaling system in Pseudomonas syringae pv. tomato DC3000 regulates gene expression in response to heterologous siderophores. J Bacteriol 2011;193:5775-83.
-
(2011)
J Bacteriol
, vol.193
, pp. 5775-5783
-
-
Markel, E.1
Maciak, C.2
Butcher, B.G.3
-
99
-
-
79961063576
-
Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation
-
Davies BW, Bogard RW, Mekalanos JJ. Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation. Proc Natl Acad Sci US A 2011;108:12467-72.
-
(2011)
Proc Natl Acad Sci US A
, vol.108
, pp. 12467-12472
-
-
Davies, B.W.1
Bogard, R.W.2
Mekalanos, J.J.3
-
100
-
-
84861550649
-
A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq
-
Wilbanks EG, Larsen DJ, Neches RY, etal. A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq. Nucleic Acids Res 2012;40:e74.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Wilbanks, E.G.1
Larsen, D.J.2
Neches, R.Y.3
-
101
-
-
84861210509
-
Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein
-
Blasco B, Chen JM, Hartkoorn R, etal. Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein. PLoS Pathogens 2012;8:e1002621.
-
(2012)
PLoS Pathogens
, vol.8
-
-
Blasco, B.1
Chen, J.M.2
Hartkoorn, R.3
-
103
-
-
7444262496
-
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)
-
Gerhard DS, Wagner L, Feingold EA, et al. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). GenomeRes 2004;14:2121-7.
-
(2004)
GenomeRes
, vol.14
, pp. 2121-2127
-
-
Gerhard, D.S.1
Wagner, L.2
Feingold, E.A.3
-
105
-
-
84988044467
-
CAGE: cap analysis of gene expression
-
Kodzius R, Kojima M, Nishiyori H, et al. CAGE: cap analysis of gene expression. NatMethods 2006;3:211-22.
-
(2006)
NatMethods
, vol.3
, pp. 211-222
-
-
Kodzius, R.1
Kojima, M.2
Nishiyori, H.3
-
106
-
-
84859045122
-
Genome sequence and transcriptome analysis of the radioresistant bacterium Deinococcus gobiensis: insights into the extreme environmental adaptations
-
Yuan M, Chen M, Zhang W, et al. Genome sequence and transcriptome analysis of the radioresistant bacterium Deinococcus gobiensis: insights into the extreme environmental adaptations. PLoS One 2012;7:e34458.
-
(2012)
PLoS One
, vol.7
-
-
Yuan, M.1
Chen, M.2
Zhang, W.3
-
107
-
-
84856051566
-
Transcriptome sequencing of Salmonella enterica serovar Enteritidis under desiccation and starvation stress in peanut oil
-
Deng X, Li Z, Zhang W. Transcriptome sequencing of Salmonella enterica serovar Enteritidis under desiccation and starvation stress in peanut oil. Food Microbiol 2012;30: 311-5.
-
(2012)
Food Microbiol
, vol.30
, pp. 311-315
-
-
Deng, X.1
Li, Z.2
Zhang, W.3
-
109
-
-
80051915419
-
RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression
-
Mandlik A, Livny J, Robins WP, et al. RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression. CellHostMicrobe 2011;10:165-74.
-
(2011)
CellHostMicrobe
, vol.10
, pp. 165-174
-
-
Mandlik, A.1
Livny, J.2
Robins, W.P.3
-
110
-
-
70849119931
-
Transcriptome complexity in a genome-reduced bacterium
-
Güell M, van Noort V, Yus E, et al. Transcriptome complexity in a genome-reduced bacterium. Science 2009;326: 1268-71.
-
(2009)
Science
, vol.326
, pp. 1268-1271
-
-
Güell, M.1
van Noort, V.2
Yus, E.3
-
111
-
-
74949137952
-
A single-base resolution map of an archaeal transcriptome
-
Wurtzel O, Sapra R, Chen F, et al. A single-base resolution map of an archaeal transcriptome. Genome Res 2010;20: 133-41.
-
(2010)
Genome Res
, vol.20
, pp. 133-141
-
-
Wurtzel, O.1
Sapra, R.2
Chen, F.3
-
112
-
-
80053375441
-
Single-nucleotide resolution analysis of the transcriptome structure of Clostridium 452 Forde and O'Toole beijerinckii NCIMB 8052 using RNA-Seq
-
Wang Y, Li X, Mao Y, et al. Single-nucleotide resolution analysis of the transcriptome structure of Clostridium 452 Forde and O'Toole beijerinckii NCIMB 8052 using RNA-Seq. BMC Genomics 2011;12:479.
-
(2011)
BMC Genomics
, vol.12
, pp. 479
-
-
Wang, Y.1
Li, X.2
Mao, Y.3
-
113
-
-
84856065621
-
RNA-seq based transcriptional map of bovine respiratory disease pathogen ''Histophilus somni 2336''
-
Kumar R, Lawrence ML, Watt J, et al. RNA-seq based transcriptional map of bovine respiratory disease pathogen ''Histophilus somni 2336''. PLoS One 2012;7:e29435.
-
(2012)
PLoS One
, vol.7
-
-
Kumar, R.1
Lawrence, M.L.2
Watt, J.3
-
114
-
-
65549099632
-
Structure and complexity of a bacterial transcriptome
-
Passalacqua KD, Varadarajan A, Ondov BD, et al. Structure and complexity of a bacterial transcriptome. J Bacteriol 2009;191:3203-11.
-
(2009)
J Bacteriol
, vol.191
, pp. 3203-3211
-
-
Passalacqua, K.D.1
Varadarajan, A.2
Ondov, B.D.3
-
115
-
-
68249102779
-
A strandspecific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi
-
Perkins TT, Kingsley RA, Fookes MC, et al. A strandspecific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi. PLoS Genet 2009;5: e1000569.
-
(2009)
PLoS Genet
, vol.5
-
-
Perkins, T.T.1
Kingsley, R.A.2
Fookes, M.C.3
-
116
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
Sharma CM, Hoffmann S, Darfeuille F, et al. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 2010;464:250-5.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
-
118
-
-
84864379915
-
Genomewide identification of novel small RNAs in Pseudomonas aeruginosa
-
Gómez-Lozano M, Marvig RL, Molin S, et al. Genomewide identification of novel small RNAs in Pseudomonas aeruginosa. EnvironMicrobiol 2012;14:2006-16.
-
(2012)
EnvironMicrobiol
, vol.14
, pp. 2006-2016
-
-
Gómez-Lozano, M.1
Marvig, R.L.2
Molin, S.3
-
119
-
-
80955168065
-
Application of RNA-seq to reveal the transcript profile in bacteria
-
Pinto AC, Melo-Barbosa HP, Miyoshi A, et al. Application of RNA-seq to reveal the transcript profile in bacteria. GenetMol Res 2011;10:1707-18.
-
(2011)
GenetMol Res
, vol.10
, pp. 1707-1718
-
-
Pinto, A.C.1
Melo-Barbosa, H.P.2
Miyoshi, A.3
-
120
-
-
62649160909
-
Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing
-
Yoder-Himes DR, Chain PSG, Zhu Y, et al. Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing. ProcNatl Acad SciUSA 2009;106:3976-81.
-
(2009)
ProcNatl Acad SciUSA
, vol.106
, pp. 3976-3981
-
-
Yoder-Himes, D.R.1
Chain, P.S.G.2
Zhu, Y.3
-
121
-
-
72849114230
-
Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
-
Sorek R, Cossart P. Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nat RevGenet 2010;11:9-16.
-
(2010)
Nat RevGenet
, vol.11
, pp. 9-16
-
-
Sorek, R.1
Cossart, P.2
-
124
-
-
78149421813
-
Bacterial antisense RNAs: how many are there, and what are they doing?
-
Thomason MK, Storz G. Bacterial antisense RNAs: how many are there, and what are they doing? Annu Rev Genet 2010;44:167-88.
-
(2010)
Annu Rev Genet
, vol.44
, pp. 167-188
-
-
Thomason, M.K.1
Storz, G.2
-
125
-
-
67649268395
-
The Listeria transcriptional landscape from saprophytism to virulence
-
Toledo-Arana A, Dussurget O, Nikitas G, etal. The Listeria transcriptional landscape from saprophytism to virulence. Nature 2009;459:950-6.
-
(2009)
Nature
, vol.459
, pp. 950-956
-
-
Toledo-Arana, A.1
Dussurget, O.2
Nikitas, G.3
-
126
-
-
57349189421
-
Small toxic proteins and the antisense RNAs that repress them
-
Fozo EM, Hemm MR, Storz G. Small toxic proteins and the antisense RNAs that repress them. Microbiol Mol Biol Rev 2008;72:579-89
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 579-589
-
-
Fozo, E.M.1
Hemm, M.R.2
Storz, G.3
-
127
-
-
54249135920
-
GadX/GadWdependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/ GadW-specific binding sites
-
Tramonti A, De Canio M, De Biase D. GadX/GadWdependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/ GadW-specific binding sites. Mol Microbiol 2008;70: 965-82.
-
(2008)
Mol Microbiol
, vol.70
, pp. 965-982
-
-
Tramonti, A.1
De Canio, M.2
De Biase, D.3
-
128
-
-
77952128269
-
An antisense RNA that governs the expression kinetics of a multifunctional virulence gene
-
Lee E-J, Groisman EA. An antisense RNA that governs the expression kinetics of a multifunctional virulence gene. MolMicrobiol 2010;76:1020-33.
-
(2010)
MolMicrobiol
, vol.76
, pp. 1020-1033
-
-
Lee, E.-J.1
Groisman, E.A.2
-
129
-
-
84865205659
-
Diversity of antisense and other non-coding RNAs in Archaea revealed by comparative small RNA sequencing in four Pyrobaculum species
-
Bernick DL, Dennis PP, Lui LM, et al. Diversity of antisense and other non-coding RNAs in Archaea revealed by comparative small RNA sequencing in four Pyrobaculum species. FrontMicrobiol 2012;3:231.
-
(2012)
FrontMicrobiol
, vol.3
, pp. 231
-
-
Bernick, D.L.1
Dennis, P.P.2
Lui, L.M.3
-
130
-
-
77953548312
-
Prokaryotic wholetranscriptome analysis: deep sequencing and tiling arrays
-
Siezen RJ, Wilson G, Todt T. Prokaryotic wholetranscriptome analysis: deep sequencing and tiling arrays. Microb Biotechnol 2010;3:125-30.
-
(2010)
Microb Biotechnol
, vol.3
, pp. 125-130
-
-
Siezen, R.J.1
Wilson, G.2
Todt, T.3
-
131
-
-
34347355440
-
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
-
Molnár A, Schwach F, Studholme DJ, et al. miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 2007;447:1126-9.
-
(2007)
Nature
, vol.447
, pp. 1126-1129
-
-
Molnár, A.1
Schwach, F.2
Studholme, D.J.3
-
132
-
-
67650815471
-
Prevalence of transcription promoters within archaeal operons and coding sequences
-
Koide T, Reiss DJ, Bare JC, et al. Prevalence of transcription promoters within archaeal operons and coding sequences. Mol Syst Biol 2009;5:285.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 285
-
-
Koide, T.1
Reiss, D.J.2
Bare, J.C.3
-
133
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni JC, Mason CE, Mane SM, et al. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 2008;18: 1509-17.
-
(2008)
Genome Res
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
-
134
-
-
52649157765
-
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
-
Dohm JC, Lottaz C, Borodina T, et al. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008;36:e105.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dohm, J.C.1
Lottaz, C.2
Borodina, T.3
-
135
-
-
79960270116
-
Outbreak of haemolytic uraemic syndrome and bloody diarrhoea due to Escherichia coli O104:H4, south-west France, June 2011
-
pii:19905
-
Gault G, Weill FX, Mariani-Kurkdjian P, etal. Outbreak of haemolytic uraemic syndrome and bloody diarrhoea due to Escherichia coli O104:H4, south-west France, June 2011. Euro Surveill 2011;16:pii:19905.
-
(2011)
Euro Surveill
, vol.16
-
-
Gault, G.1
Weill, F.X.2
Mariani-Kurkdjian, P.3
-
136
-
-
79960609901
-
Prospective genomic characterization of the german enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
-
Mellmann A, Harmsen D, Cummings CA, et al. Prospective genomic characterization of the german enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoSOne 2011;6: e22751.
-
(2011)
PLoSOne
, vol.6
-
-
Mellmann, A.1
Harmsen, D.2
Cummings, C.A.3
-
137
-
-
84857411659
-
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
-
Grad YH, Lipsitch M, Feldgarden M, et al. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Proc Natl Acad Sci U S A 2012;109: 3065-70.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 3065-3070
-
-
Grad, Y.H.1
Lipsitch, M.2
Feldgarden, M.3
-
138
-
-
84862199752
-
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
-
Köser CU, Holden MTG, Ellington MJ, et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. NEnglJMed 2012;366:2267-75.
-
(2012)
NEnglJMed
, vol.366
, pp. 2267-2275
-
-
Köser, C.U.1
Holden, M.T.G.2
Ellington, M.J.3
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