Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study

Journal of Microbiological Methods

Volumn 86, Issue 2, 2011, Pages 218-223

  Cerdeira, Louise Teixeira ^a   Carneiro, Adriana Ribeiro ^a   Ramos, Rommel Thiago Jucá ^a   de Almeida, Sintia Silva ^b   D́afonseca, Vivian ^b   Schneider, Maria Paula Cruz ^a   Baumbach, Jan ^d   Tauch, Andreas ^c   McCulloch, John Anthony ^a   Azevedo, Vasco Ariston Carvalho ^b   Silva, Artur ^a  

^a FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^b FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^c BIELEFELD UNIVERSITY   (Germany)

^d MAX PLANCK INSTITUTE FOR INFORMATICS   (Germany)

Author keywords

Assembly; Corynebacterium; De novo; Next generation sequencing; Short read; SOLiD

Indexed keywords

ALGORITHM; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; CONTROLLED STUDY; CORYNEBACTERIUM PSEUDOTUBERCULOSIS; GENE MAPPING; GENE SEQUENCE; GENOMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROCESS OPTIMIZATION; PROTEIN ASSEMBLY; SEQUENCE ALIGNMENT;

COMPUTATIONAL BIOLOGY; CORYNEBACTERIUM PSEUDOTUBERCULOSIS; DNA, BACTERIAL; GENOME, BACTERIAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); CORYNEBACTERIUM; CORYNEBACTERIUM PSEUDOTUBERCULOSIS;

EID: 79959723260     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2011.05.008     Document Type: Article

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