An extracytoplasmic function sigma factor-mediated cell surface signaling system in pseudomonas syringae pv. tomato DC3000 regulates gene expression in response to heterologous siderophores

Journal of Bacteriology

Volumn 193, Issue 20, 2011, Pages 5775-5783

  Markel, Eric ^a,b   Maciak, Charlene ^a,b   Butcher, Bronwyn G ^b   Myers, Christopher R ^c   Stodghill, Paul ^a   Bao, Zhongmeng ^b   Cartinhour, Sam ^a,b   Swingle, Bryan ^a,b  

^a U S DEPARTMENT OF AGRICULTURE   (United States)

^b Cornell University ^*  (United States)

^c Laboratory of Atomic and Solid State Physics and Sibley School of Mechanical and Aerospace Engineering   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CELL MEMBRANE PROTEIN; IRON; PROTEIN PSPTO 1206; PROTEIN PSPTO 2145; PYOVERDINE; SIDEROPHORE; SIGMA FACTOR; SIGMA FACTOR PSPTO 1203; UNCLASSIFIED DRUG;

ARTICLE; CELL FUNCTION; CELL SURFACE; CELLULAR STRESS RESPONSE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; EXTRACYTOPLASMIC FUNCTION; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENETIC REGULATION; HIGH THROUGHPUT SEQUENCING; IRON RESTRICTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT PATHOGEN INTERACTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PSEUDOMONAS SYRINGAE; REGULATOR GENE; REGULON; SIGNAL TRANSDUCTION; TOMATO;

BACTERIAL PROTEINS; CYTOPLASM; GENE EXPRESSION REGULATION, BACTERIAL; IRON; LYCOPERSICON ESCULENTUM; PLANT DISEASES; PROTEIN BINDING; PSEUDOMONAS SYRINGAE; SIDEROPHORES; SIGMA FACTOR; SIGNAL TRANSDUCTION;

PSEUDOMONAS SYRINGAE; PSEUDOMONAS SYRINGAE PV. TOMATO;

EID: 80053581966     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.05114-11     Document Type: Article

References (47)

1. Althaus, E. W., C. E. Outten, K. E. Olson, H. Cao, and T. V. O'Halloran. 1999. The ferric uptake regulation (Fur) repressor is a zinc metalloprotein. Biochemistry 38:6559-6569.
2. Angerer, A., and V. Braun. 1998. Iron regulates transcription of the Escherichia coli ferric citrate transport genes directly and through the transcription initiation proteins. Arch. Microbiol. 169:483-490.
3. Aparicio, O., J. V. Geisberg, and K. Struhl. 2004. Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo. Curr. Protoc. Cell Biol. Chapter 17:Unit 17.7.
4. Braun, V., and H. Killmann. 1999. Bacterial solutions to the iron-supply problem. Trends Biochem. Sci. 24:104-109.
5. Reference deleted
6. Reference deleted
7. Butcher, B. G., et al. 22 July 2011, posting date. Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000. J. Bacteriol. [Epub ahead of print.]
8. Cases, I., V. de Lorenzo, and C. A. Ouzounis. 2003. Transcription regulation and environmental adaptation in bacteria. Trends Microbiol. 11:248-253.
9. Chipperfield, J. R., and C. Ratledge. 2000. Salicylic acid is not a bacterial siderophore: a theoretical study. Biometals 13:165-168.
10. Choi, K. H., A. Kumar, and H. P. Schweizer. 2006. A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation. J. Microbiol. Methods 64:391-397.
11. Dulla, G. F., K. V. Krasileva, and S. E. Lindow. 2010. Interference of quorum sensing in Pseudomonas syringae by bacterial epiphytes that limit iron availability. Environ. Microbiol. 12:1762-1774.
12. Enz, S., S. Mahren, C. Menzel, and V. Braun. 2003. Analysis of the ferric citrate transport gene promoter of Escherichia coli. J. Bacteriol. 185:2387-2391.
13. Gaballa, A., and J. D. Helmann. 2007. Substrate induction of siderophore transport in Bacillus subtilis mediated by a novel one-component regulator. Mol. Microbiol. 66:164-173.
14. Galperin, M. Y. 2005. A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts. BMC Microbiol. 5:35.
15. Gross, C. A., et al. 1998. The functional and regulatory roles of sigma factors in transcription. Cold Spring Harbor Symp. Quant. Biol. 63:141-155.
16. Gruber, T. M., and C. A. Gross. 2003. Multiple sigma subunits and the partitioning of bacterial transcription space. Annu. Rev. Microbiol. 57:441-466.
17. Hanahan, D. 1985. Techniques for transformation of E. coli, p. 109-135. In D. M. Glover (ed.), DNA cloning, a practical approach. IRL Press, Oxford, United Kingdom.
18. Harle, C., I. Kim, A. Angerer, and V. Braun. 1995. Signal transfer through three compartments: transcription initiation of the Escherichia coli ferric citrate transport system from the cell surface. EMBO J. 14:1430-1438.
19. Helmann, J. D. 2002. The extracytoplasmic function (ECF) sigma factors. Adv. Microb. Physiol. 46:47-110.
20. Hirano, S. S., and C. D. Upper. 2000. Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae-a pathogen, ice nucleus, and epiphyte. Microbiol. Mol. Biol. Rev. 64:624-653.
21. Ishihama, A. 2000. Functional modulation of Escherichia coli RNA polymerase. Annu. Rev. Microbiol. 54:499-518.
22. Jones, A. M., and M. C. Wildermuth. 2011. The phytopathogen Pseudomonas syringae pv. tomato DC3000 has three high-affinity iron-scavenging systems functional under iron limitation but dispensable for pathogenesis. J. Bacteriol. 193:2767-2775.
23. Keane, P. J., and K. A. P. B. New. 1970. Crown gall of stone fruit. Identification and nomenclature of Agrobacterium isolates. Aust. J. Biol. Sci. 23: 585-593.
24. Kim, I., A. Stiefel, S. Plantor, A. Angerer, and V. Braun. 1997. Transcription induction of the ferric citrate transport genes via the N-terminus of the FecA outer membrane protein, the Ton system and the electrochemical potential of the cytoplasmic membrane. Mol. Microbiol. 23:333-344.
25. King, E. O., M. K. Ward, and D. E. Raney. 1954. Two simple media for the demonstration of pyocyanin and fluorescein. J. Lab. Clin. Med. 44:301-307.
26. Klement, Z. 1965. Method of obtaining fluid from the intercellular spaces of foliage and the fluid's merit as a substrate for phytobacterial pathogens. Phytopathology 55:1033-1034.
27. Koebnik, R. 2005. TonB-dependent trans-envelope signalling: the exception or the rule? Trends Microbiol. 13:343-347.
28. Lamont, I. L., P. A. Beare, U. Ochsner, A. I. Vasil, and M. L. Vasil. 2002. Siderophore-mediated signaling regulates virulence factor production in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U. S. A. 99:7072-7077.
29. Lane, W. J., and S. A. Darst. 2006. The structural basis for promoter -35 element recognition by the group IV sigma factors. PLoS Biol. 4:e269.
30. Leoni, L., N. Orsi, V. de Lorenzo, and P. Visca. 2000. Functional analysis of PvdS, an iron starvation sigma factor of Pseudomonas aeruginosa. J. Bacteriol. 182:1481-1491.
31. Lewis, D. E., and S. Adhya. 2004. Axiom of determining transcription start points by RNA polymerase in Escherichia coli. Mol. Microbiol. 54:692-701.
32. Li, R., et al. 2009. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25:1966-1967.
33. Llamas, M. A., et al. 2008. Characterization of five novel Pseudomonas aeruginosa cell-surface signalling systems. Mol. Microbiol. 67:458-472.
34. Mettrick, K. A., and I. L. Lamont. 2009. Different roles for anti-sigma factors in siderophore signalling pathways of Pseudomonas aeruginosa. Mol. Microbiol. 74:1257-1271.
35. Missiakas, D., and S. Raina. 1998. The extracytoplasmic function sigma factors: role and regulation. Mol. Microbiol. 28:1059-1066.
36. Mittenhuber, G. 2002. An inventory of genes encoding RNA polymerase sigma factors in 31 completely sequenced eubacterial genomes. J. Mol. Microbiol. Biotechnol. 4:77-91.
37. Murakami, K. S., S. Masuda, E. A. Campbell, O. Muzzin, and S. A. Darst. 2002. Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science 296:1285-1290.
38. Ochs, M., et al. 1995. Regulation of citrate-dependent iron transport of Escherichia coli: fecR is required for transcription activation by FecI. Mol. Microbiol. 15:119-132.
39. Ochsner, U. A., P. J. Wilderman, A. I. Vasil, and M. L. Vasil. 2002. GeneChip expression analysis of the iron starvation response in Pseudomonas aeruginosa: identification of novel pyoverdine biosynthesis genes. Mol. Microbiol. 45:1277-1287.
40. Oguiza, J. A., K. Kiil, and D. W. Ussery. 2005. Extracytoplasmic function sigma factors in Pseudomonas syringae. Trends Microbiol. 13:565-568.
41. Paget, M. S., and J. D. Helmann. 2003. The sigma70 family of sigma factors. Genome Biol. 4:203.
42. Staron, A., et al. 2009. The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family. Mol. Microbiol. 74:557-581.
43. Stover, C. K., et al. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406:959-964.
44. Reference deleted
45. Swingle, B., et al. 2008. Characterization of the PvdS-regulated promoter motif in Pseudomonas syringae pv. tomato DC3000 reveals regulon members and insights regarding PvdS function in other pseudomonads. Mol. Microbiol. 68:871-889.
46. Visca, P., L. Leoni, M. J. Wilson, and I. L. Lamont. 2002. Iron transport and regulation, cell signalling and genomics: lessons from Escherichia coli and Pseudomonas. Mol. Microbiol. 45:1177-1190.
47. Welz, D., and V. Braun. 1998. Ferric citrate transport of Escherichia coli: functional regions of the FecR transmembrane regulatory protein. J. Bacteriol. 180:2387-2394.