Helicobacter pylori genome evolution during human infection

Proceedings of the National Academy of Sciences of the United States of America

Volumn 108, Issue 12, 2011, Pages 5033-5038

  Kennemann, Lynn ^a   Didelot, Xavier ^b   Aebischer, Toni ^c   Kuhn, Stefanie ^a   Drescher, Bernd ^d   Droege, Marcus ^e   Reinhardt, Richard ^f   Correa, Pelayo ^g   Meyer, Thomas F ^c   Josenhans, Christine ^a   Falush, Daniel ^h,i   Suerbaum, Sebastian ^a,i  

^a HANNOVER MEDICAL SCHOOL   (Germany)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c MAX PLANCK INSTITUTE FOR INFECTION BIOLOGY   (Germany)

^d GenDocInfo UG   (Germany)

^e ROCHE DIAGNOSTICS GMBH   (Germany)

^f MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^g VANDERBILT INGRAM CANCER CENTER   (United States)

^h UNIVERSITY COLLEGE CORK   (Ireland)

ⁱ MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

Author keywords

Comparative genomics; Mutation

Indexed keywords

DNA FRAGMENT; HELICOBACTER PYLORI VACCINE;

ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL COLONIZATION; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ADHERENCE; CLINICAL ARTICLE; COLOMBIA; GENE SEQUENCE; HELICOBACTER INFECTION; HELICOBACTER PYLORI; HUMAN; HUMAN TISSUE; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

ADOLESCENT; CHILD; CHILD, PRESCHOOL; EVOLUTION, MOLECULAR; FEMALE; GENOME, BACTERIAL; GENOME-WIDE ASSOCIATION STUDY; GENOMIC INSTABILITY; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; MALE; POLYMORPHISM, SINGLE NUCLEOTIDE;

BACTERIA (MICROORGANISMS); CANNABACEAE; HELICOBACTER PYLORI;

EID: 79953187986     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1018444108     Document Type: Article

References (36)

1. Suerbaum S, Michetti P (2002) Helicobacter pylori infection. N Engl J Med 347:1175-1186.
2. Björkholm B, et al. (2001) Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori. Proc Natl Acad Sci USA 98:14607-14612. (Pubitemid 33121439)
3. Suerbaum S, et al. (1998) Free recombination within Helicobacter pylori. Proc Natl Acad Sci USA 95:12619-12624. (Pubitemid 28483814)
4. Falush D, et al. (2001) Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci USA 98:15056-15061. (Pubitemid 34013968)
5. Kersulyte D, Chalkauskas H, Berg DE (1999) Emergence of recombinant strains of Helicobacter pylori during human infection. Mol Microbiol 31:31-43. (Pubitemid 29012145)
6. Suerbaum S, Josenhans C (2007) Helicobacter pylori evolution and phenotypic diversification in a changing host. Nat Rev Microbiol 5:441-452. (Pubitemid 46780081)
7. Kang J, Blaser MJ (2006) Bacterial populations as perfect gases: Genomic integrity and diversification tensions in Helicobacter pylori. Nat Rev Microbiol 4:826-836. (Pubitemid 44593949)
8. Morelli G, et al. (2010) Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PLoS Genet 6:e1001036.
9. Margulies M, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380. (Pubitemid 41613494)
10. Graham DY, et al. (2004) Challenge model for Helicobacter pylori infection in human volunteers. Gut 53:1235-1243. (Pubitemid 39120104)
11. Alm RA, et al. (1999) Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397:176-180.
12. Didelot X, Falush D (2007) Inference of bacterial microevolution using multilocus sequence data. Genetics 175:1251-1266. (Pubitemid 46798228)
13. Alm RA, et al. (2000) Comparative genomics of Helicobacter pylori: Analysis of the outer membrane protein families. Infect Immun 68:4155-4168. (Pubitemid 30434570)
14. Ilver D, et al. (1998) Helicobacter pylori adhesin binding fucosylated histo-blood group antigens revealed by retagging. Science 279:373-377. (Pubitemid 28063371)
15. Mahdavi J, et al. (2002) Helicobacter pylori SabA adhesin in persistent infection and chronic inflammation. Science 297:573-578. (Pubitemid 34815336)
16. Peck B, Ortkamp M, Diehl KD, Hundt E, Knapp B (1999) Conservation, localization and expression of HopZ, a protein involved in adhesion of Helicobacter pylori. Nucleic Acids Res 27:3325-3333. (Pubitemid 29381326)
17. Odenbreit S, Till M, Hofreuter D, Faller G, Haas R (1999) Genetic and functional characterization of the alpAB gene locus essential for the adhesion of Helicobacter pylori to human gastric tissue. Mol Microbiol 31:1537-1548. (Pubitemid 29110109)
18. Aebischer T, et al. (2008) Correlation of T cell response and bacterial clearance in human volunteers challenged with Helicobacter pylori revealed by randomised controlled vaccination with Ty21a-based Salmonella vaccines. Gut 57:1065-1072.
19. Langdon R, Craig JE, Goldrick M, Houldsworth R, High NJ (2005) Analysis of the role of HP0208, aphase-variable open reading frame, and its homologues HP1416 and HP0159 in the biosynthesis of Helicobacter pylori lipopolysaccharide. J Med Microbiol 54:697-706. (Pubitemid 41129162)
20. Kraft C, et al. (2006) Genomic changes during chronic Helicobacter pylori infection. J Bacteriol 188:249-254.
21. Kulick S, et al. (2008) Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori. PLoS One 3:e3797.
22. McKane M, Milkman R (1995) Transduction, restriction and recombination patterns in Escherichia coli. Genetics 139:35-43.
23. Lin EA, et al. (2009) Natural transformation of Helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size. PLoS Pathog 5:e1000337.
24. Hofreuter D, Odenbreit S, Haas R (2001) Natural transformation competence in Helicobacter pylori is mediated by the basic components of a type IV secretion system. Mol Microbiol 41:379-391. (Pubitemid 32730538)
25. Stingl K, Muller S, Scheidgen-Kleyboldt G, Clausen M, Maier B (2009) Composite system mediates two-step DNA uptake into Helicobacter pylori. Proc Natl Acad Sci USA 107:1184-1189.
26. Yeh YC, Lin TL, Chang KC, Wang JT (2003) Characterization of a ComE3 homologue essential for DNA transformation in Helicobacter pylori. Infect Immun 71:5427-5431.
27. Hamilton HL, Dillard JP (2006) Natural transformation of Neisseria gonorrhoeae: From DNA donation to homologous recombination. Mol Microbiol 59:376-385.
28. Backert S, Kwok T, König W (2005) Conjugative plasmid DNA transfer in Helicobacter pylori mediated by chromosomally encoded relaxase and TraG-like proteins. Microbiology 151:3493-3503. (Pubitemid 41632063)
29. Fischer W, et al. (2010) Strain-specific genes of Helicobacter pylori: Genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res 38:6089-6101.
30. Smith NH, Maynard Smith J, Spratt BG (1995) Sequence evolution of the porB gene of Neisseria gonorrhoeae and Neisseria meningitidis: Evidence of positive Darwinian selection. Mol Biol Evol 12:363-370.
31. Tomb J-F, et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388:539-547. (Pubitemid 27339996)
32. Giannakis M, Chen SL, Karam SM, Engstrand L, Gordon JI (2008) Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells. Proc Natl Acad Sci USA 105:4358-4363. (Pubitemid 351754385)
33. Giannakis M, et al. (2009) Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis. J Biol Chem 284:30383-30394.
34. Lundin A, et al. (2005) Slow genetic divergence of Helicobacter pylori strains during long-term colonization. Infect Immun 73:4818-4822. (Pubitemid 41105638)
35. Correa P, et al. (2000) Chemoprevention of gastric dysplasia: Randomized trial of antioxidant supplements and anti-Helicobacter pylori therapy. J Natl Cancer Inst 92:1881-1888. (Pubitemid 32036918)
36. Schwarz S, et al. (2008) Horizontal versus familial transmission of Helicobacter pylori. PLoS Pathog 4:e1000180.