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Volumn 7, Issue , 2006, Pages

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations

Author keywords

[No Author keywords available]

Indexed keywords

AFFYMETRIX; EXPRESSION LEVELS; FALSE POSITIVE; GENE PRODUCTS; NUCLEOTIDE SEQUENCES; SIGNAL STRENGTHS; SINGLE PROBE; SINGLE SEQUENCES;

EID: 33746361200     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-276     Document Type: Article
Times cited : (136)

References (32)
  • 3
    • 24644512209 scopus 로고    scopus 로고
    • Simpleaffy: A BioConductor package for Affymetrix Quality Control and data analysis
    • Wilson CL, Miller CJ: Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis. Bioinformatics 2005, 21(18):3683-3685.
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3683-3685
    • Wilson, C.L.1    Miller, C.J.2
  • 4
    • 19544369863 scopus 로고    scopus 로고
    • ADAPT: A database of affymetrix probesets and transcripts
    • Leong HS, Yates T, Wilson C, Miller CJ: ADAPT: a database of affymetrix probesets and transcripts. Bioinformatics 2005, 21(10):2552-2553.
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2552-2553
    • Leong, H.S.1    Yates, T.2    Wilson, C.3    Miller, C.J.4
  • 5
    • 27244450872 scopus 로고    scopus 로고
    • Sequence dependence of cross-hybridization on short oligo microarrays
    • Wu C, Carta R, Zhang L: Sequence dependence of cross-hybridization on short oligo microarrays. Nucl Acids Res 2005, 33(9):e84.
    • (2005) Nucl Acids Res , vol.33 , Issue.9
    • Wu, C.1    Carta, R.2    Zhang, L.3
  • 9
    • 26444454986 scopus 로고    scopus 로고
    • A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array
    • Harbig J, Sprinkle R, Enkemann SA: A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array. Nucl Acids Res 2005, 33(3):e31.
    • (2005) Nucl Acids Res , vol.33 , Issue.3
    • Harbig, J.1    Sprinkle, R.2    Enkemann, S.A.3
  • 11
    • 25444515422 scopus 로고    scopus 로고
    • Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements
    • Carter S, Eklund A, Mecham B, Kohane I, Szallasi Z: Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. BMC Bioinformatics 2005, 6:107.
    • (2005) BMC Bioinformatics , vol.6 , pp. 107
    • Carter, S.1    Eklund, A.2    Mecham, B.3    Kohane, I.4    Szallasi, Z.5
  • 12
    • 0346801873 scopus 로고    scopus 로고
    • The Gene Ontology (GO) database and informatics resource
    • Consortium GO: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Research 2004:D258-D261.
    • (2004) Nucleic Acids Research
    • Consortium, G.O.1
  • 15
    • 0035755549 scopus 로고    scopus 로고
    • Analysis of large-scale gene expression data
    • Sherlock G: Analysis of large-scale gene expression data. Briefings in Bioinformatics 2001, 2(4):350-362.
    • (2001) Briefings in Bioinformatics , vol.2 , Issue.4 , pp. 350-362
    • Sherlock, G.1
  • 16
    • 0034710924 scopus 로고    scopus 로고
    • Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
    • Butte AJ, Tamayo P, Slonim D, Golub TR, Kohane IS: Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. PNAS 2000, 97(22):12182-12186.
    • (2000) PNAS , vol.97 , Issue.22 , pp. 12182-12186
    • Butte, A.J.1    Tamayo, P.2    Slonim, D.3    Golub, T.R.4    Kohane, I.S.5
  • 17
    • 0033655775 scopus 로고    scopus 로고
    • Mutual Information Relevance Networks: Functional Genomic Clustering Using Pairwise Entropy Measurements
    • Butte AJ, Kohane I: Mutual Information Relevance Networks: Functional Genomic Clustering Using Pairwise Entropy Measurements. Pac Symp Biocomput 2000:418-429.
    • (2000) Pac Symp Biocomput , pp. 418-429
    • Butte, A.J.1    Kohane, I.2
  • 18
    • 0141993704 scopus 로고    scopus 로고
    • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    • Stuart J, Segal E, Koller D, Kim S: A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules. Science 2003, 302:249-255.
    • (2003) Science , vol.302 , pp. 249-255
    • Stuart, J.1    Segal, E.2    Koller, D.3    Kim, S.4
  • 19
    • 0141966130 scopus 로고    scopus 로고
    • Statistical Algorithms Description Document
    • Affymetrix
    • Affymetrix: Statistical Algorithms Description Document. 2002.
    • (2002)
  • 21
    • 2442601878 scopus 로고    scopus 로고
    • A Model Based Background Adjustment for Oligonucleotide Expression Arrays
    • Technical Report. John Hopkins University. Department of Biostatistics Working Papers
    • Wu Z, Irizarry R, Gentleman R, Murillo F, Spencer F: A Model Based Background Adjustment for Oligonucleotide Expression Arrays. Technical Report. John Hopkins University. Department of Biostatistics Working Papers 2003.
    • (2003)
    • Wu, Z.1    Irizarry, R.2    Gentleman, R.3    Murillo, F.4    Spencer, F.5
  • 22
    • 2942534292 scopus 로고    scopus 로고
    • LGL: Creating a Map of Protein Function with an Algorithm for Visualizing Very Large Biological Networks
    • Adai AT, Date SV, Wieland S, Marcotte EM: LGL: Creating a Map of Protein Function with an Algorithm for Visualizing Very Large Biological Networks. Journal of Molecular Biology 2004, 340:179-190.
    • (2004) Journal of Molecular Biology , vol.340 , pp. 179-190
    • Adai, A.T.1    Date, S.V.2    Wieland, S.3    Marcotte, E.M.4
  • 24
    • 1842843558 scopus 로고    scopus 로고
    • Progress in bioinformatics and the importance of being earnest
    • Attwood T, Miller C: Progress in bioinformatics and the importance of being earnest. Biotechnol Annu Rev 2002, 8:1-54.
    • (2002) Biotechnol Annu Rev , vol.8 , pp. 1-54
    • Attwood, T.1    Miller, C.2
  • 25
    • 33746368096 scopus 로고    scopus 로고
    • Exon Probeset Annotations and Transcript Cluster Groupings
    • Affymetrix
    • Affymetrix: Exon Probeset Annotations and Transcript Cluster Groupings. 2005.
    • (2005)
  • 27
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • (Database issue)
    • Pruitt KD, Tatusova T, Maglott DR: NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 2005, 33(Database issue):D501-504.
    • (2005) Nucleic Acids Res , vol.33
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 30
    • 1342288026 scopus 로고    scopus 로고
    • Affy - Analysis of Affymetrix Gene Chip data at the probe level
    • Gautier L, Cope L, Bolstad BM, Irizarry RA: affy - analysis of Affymetrix Gene Chip data at the probe level. Bioinformatics 2004, 20(3):307-315.
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.