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Volumn 106, Issue 10, 2009, Pages 3976-3981

Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

Author keywords

Cystic fibrosis; RNA seq; Soil; Transcriptomics

Indexed keywords

COMPLEMENTARY DNA; UNTRANSLATED RNA; VIRULENCE FACTOR;

EID: 62649160909     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0813403106     Document Type: Article
Times cited : (204)

References (21)
  • 1
    • 15444377106 scopus 로고    scopus 로고
    • Species abundance and diversity of Burkholderia cepacia complex in the environment
    • Ramette A, LiPuma JJ, Tiedje JM (2005) Species abundance and diversity of Burkholderia cepacia complex in the environment. Appl Environ Microbiol 71:1193-1201.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1193-1201
    • Ramette, A.1    LiPuma, J.J.2    Tiedje, J.M.3
  • 2
    • 0242621134 scopus 로고    scopus 로고
    • Burkholderia and emerging pathogens in cystic fibrosis
    • LiPuma JJ (2003) Burkholderia and emerging pathogens in cystic fibrosis. Semin Respir Crit Care Med 24:681-692.
    • (2003) Semin Respir Crit Care Med , vol.24 , pp. 681-692
    • LiPuma, J.J.1
  • 3
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis KT, Tiedje JM (2005) Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci USA 102:2567-2572.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 4
    • 0035203841 scopus 로고    scopus 로고
    • Endemicity and inter-city spread of Burkholderia cepacia genomovar III in cystic fibrosis
    • Chen JS, Witzmann KA, Spilker T, Fink RJ, LiPuma JJ (2001) Endemicity and inter-city spread of Burkholderia cepacia genomovar III in cystic fibrosis. J Pediatr 139:643-649.
    • (2001) J Pediatr , vol.139 , pp. 643-649
    • Chen, J.S.1    Witzmann, K.A.2    Spilker, T.3    Fink, R.J.4    LiPuma, J.J.5
  • 5
    • 0037042475 scopus 로고    scopus 로고
    • An epidemic Burkholderia cepacia complex strain identified in soil
    • LiPuma JJ, Spilker T, Coenye T, Gonzalez CF (2002) An epidemic Burkholderia cepacia complex strain identified in soil. Lancet 359:2002-2003.
    • (2002) Lancet , vol.359 , pp. 2002-2003
    • LiPuma, J.J.1    Spilker, T.2    Coenye, T.3    Gonzalez, C.F.4
  • 6
    • 36549035760 scopus 로고    scopus 로고
    • Nutritional cues control Pseudomonas aeruginosa multicellular behavior in cystic fibrosis sputum
    • Palmer KL, Aye LM, Whiteley M (2007) Nutritional cues control Pseudomonas aeruginosa multicellular behavior in cystic fibrosis sputum. J Bacteriol 189:8079-8087.
    • (2007) J Bacteriol , vol.189 , pp. 8079-8087
    • Palmer, K.L.1    Aye, L.M.2    Whiteley, M.3
  • 7
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H (2008) Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 36:e105.
    • (2008) Nucleic Acids Res , vol.36
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 8
    • 33750283857 scopus 로고    scopus 로고
    • Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
    • Chain PS, et. al. (2006) Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci USA 103:15280-15287.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 15280-15287
    • Chain, P.S.1    et., al.2
  • 9
    • 55749108894 scopus 로고    scopus 로고
    • A functional phenylacetic acid catabolic pathway is required for full pathogenicity of Burkholderia cenocepacia in the Caenorhabditis elegans host model
    • Law, R.J., et. al. (2008). A functional phenylacetic acid catabolic pathway is required for full pathogenicity of Burkholderia cenocepacia in the Caenorhabditis elegans host model. J Bacteriol 109:7209-7218.
    • (2008) J Bacteriol , vol.109 , pp. 7209-7218
    • Law, R.J.1    et., al.2
  • 10
    • 0024810380 scopus 로고
    • The -24/-12 promoter comes of age
    • Thony B, Hennecke H (1989) The -24/-12 promoter comes of age. FEMS Microbiol Rev 5:341-357.
    • (1989) FEMS Microbiol Rev , vol.5 , pp. 341-357
    • Thony, B.1    Hennecke, H.2
  • 11
    • 53549103048 scopus 로고    scopus 로고
    • Gene expression changes linked to antimicrobial resistance, oxidative stress, iron depletion and retained motility are observed when Burkholderia cenocepacia grows in cystic fibrosis sputum
    • Drevinek P, et. al. (2008) Gene expression changes linked to antimicrobial resistance, oxidative stress, iron depletion and retained motility are observed when Burkholderia cenocepacia grows in cystic fibrosis sputum. BMC Infect Dis 8:121.
    • (2008) BMC Infect Dis , vol.8 , pp. 121
    • Drevinek, P.1    et., al.2
  • 14
    • 35448970587 scopus 로고    scopus 로고
    • Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome
    • Coenye T, et. al. (2007) Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. FEMS Microbiol Lett 276:83-92.
    • (2007) FEMS Microbiol Lett , vol.276 , pp. 83-92
    • Coenye, T.1    et., al.2
  • 16
    • 33144480866 scopus 로고    scopus 로고
    • Organic acids, sugars, and L-tryptophane in exudates of vegetables growing on stonewool and their effects on activities of rhizosphere bacteria
    • Kamilova F, et. al. (2006) Organic acids, sugars, and L-tryptophane in exudates of vegetables growing on stonewool and their effects on activities of rhizosphere bacteria. Mol Plant Microbe Interact 19:250-256.
    • (2006) Mol Plant Microbe Interact , vol.19 , pp. 250-256
    • Kamilova, F.1    et., al.2
  • 17
    • 0035986982 scopus 로고    scopus 로고
    • Pseudomonas putida strain PCL1444, selected for efficient root colonization and naphthalene degradation, effectively utilizes root exudate components
    • Kuiper I, Kravchenko LV, Bloemberg GV, Lugtenberg BJ (2002) Pseudomonas putida strain PCL1444, selected for efficient root colonization and naphthalene degradation, effectively utilizes root exudate components. Mol Plant Microbe Interact 15:734 -741.
    • (2002) Mol Plant Microbe Interact , vol.15 , pp. 734-741
    • Kuiper, I.1    Kravchenko, L.V.2    Bloemberg, G.V.3    Lugtenberg, B.J.4
  • 21
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz S, et. al. (2004) Versatile and open software for comparing large genomes. Genome Biol 5:R12.
    • (2004) Genome Biol , vol.5
    • Kurtz, S.1    et., al.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.