-
1
-
-
77957671514
-
Functional genetic diversity among Mycobacterium tuberculosis complex clinical isolates: delineation of conserved core and lineage-specific transcriptomes during intracellular survival
-
Homolka S, Niemann S, Russell DG, Rohde KH, (2010) Functional genetic diversity among Mycobacterium tuberculosis complex clinical isolates: delineation of conserved core and lineage-specific transcriptomes during intracellular survival. PLoS Pathog 6: e1000988.
-
(2010)
PLoS Pathog
, vol.6
-
-
Homolka, S.1
Niemann, S.2
Russell, D.G.3
Rohde, K.H.4
-
2
-
-
49649095178
-
Secreted transcription factor controls Mycobacterium tuberculosis virulence
-
Raghavan S, Manzanillo P, Chan K, Dovey C, Cox JS, (2008) Secreted transcription factor controls Mycobacterium tuberculosis virulence. Nature 454: 717-721.
-
(2008)
Nature
, vol.454
, pp. 717-721
-
-
Raghavan, S.1
Manzanillo, P.2
Chan, K.3
Dovey, C.4
Cox, J.S.5
-
3
-
-
23044481526
-
Mutually dependent secretion of proteins required for mycobacterial virulence
-
Fortune SM, Jaeger A, Sarracino DA, Chase MR, Sassetti CM, et al. (2005) Mutually dependent secretion of proteins required for mycobacterial virulence. Proc Natl Acad Sci U S A 102: 10676-10681.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 10676-10681
-
-
Fortune, S.M.1
Jaeger, A.2
Sarracino, D.A.3
Chase, M.R.4
Sassetti, C.M.5
-
4
-
-
77954668186
-
EspA acts as a critical mediator of ESX1-dependent virulence in Mycobacterium tuberculosis by affecting bacterial cell wall integrity
-
Garces A, Atmakuri K, Chase MR, Woodworth JS, Krastins B, et al. (2010) EspA acts as a critical mediator of ESX1-dependent virulence in Mycobacterium tuberculosis by affecting bacterial cell wall integrity. PLoS Pathog 6: e1000957.
-
(2010)
PLoS Pathog
, vol.6
-
-
Garces, A.1
Atmakuri, K.2
Chase, M.R.3
Woodworth, J.S.4
Krastins, B.5
-
5
-
-
35348892037
-
Type VII secretion-mycobacteria show the way
-
Abdallah AM, Gey van Pittius NC, Champion PA, Cox J, Luirink J, et al. (2007) Type VII secretion-mycobacteria show the way. Nat Rev Microbiol 5: 883-891.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 883-891
-
-
Abdallah, A.M.1
Gey van Pittius, N.C.2
Champion, P.A.3
Cox, J.4
Luirink, J.5
-
6
-
-
60049091769
-
ESX/type VII secretion systems and their role in host-pathogen interaction
-
Simeone R, Bottai D, Brosch R, (2009) ESX/type VII secretion systems and their role in host-pathogen interaction. Curr Opin Microbiol 12: 4-10.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 4-10
-
-
Simeone, R.1
Bottai, D.2
Brosch, R.3
-
7
-
-
73649100289
-
Systematic genetic nomenclature for type VII secretion systems
-
Bitter W, Houben EN, Bottai D, Brodin P, Brown EJ, et al. (2009) Systematic genetic nomenclature for type VII secretion systems. PLoS Pathog 5: e1000507.
-
(2009)
PLoS Pathog
, vol.5
-
-
Bitter, W.1
Houben, E.N.2
Bottai, D.3
Brodin, P.4
Brown, E.J.5
-
8
-
-
0142059794
-
The primary mechanism of attenuation of bacillus Calmette-Guerin is a loss of secreted lytic function required for invasion of lung interstitial tissue
-
Hsu T, Hingley-Wilson SM, Chen B, Chen M, Dai AZ, et al. (2003) The primary mechanism of attenuation of bacillus Calmette-Guerin is a loss of secreted lytic function required for invasion of lung interstitial tissue. Proc Natl Acad Sci U S A 100: 12420-12425.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12420-12425
-
-
Hsu, T.1
Hingley-Wilson, S.M.2
Chen, B.3
Chen, M.4
Dai, A.Z.5
-
9
-
-
34250716965
-
M. tuberculosis and M. leprae translocate from the phagolysosome to the cytosol in myeloid cells
-
van der Wel N, Hava D, Houben D, Fluitsma D, van Zon M, et al. (2007) M. tuberculosis and M. leprae translocate from the phagolysosome to the cytosol in myeloid cells. Cell 129: 1287-1298.
-
(2007)
Cell
, vol.129
, pp. 1287-1298
-
-
van der Wel, N.1
Hava, D.2
Houben, D.3
Fluitsma, D.4
van Zon, M.5
-
10
-
-
80053235751
-
Atypical DNA recognition mechanism used by the EspR virulence regulator of Mycobacterium tuberculosis
-
Blasco B, Stenta M, Alonso-Sarduy L, Dietler G, Peraro MD, et al. (2011) Atypical DNA recognition mechanism used by the EspR virulence regulator of Mycobacterium tuberculosis. Mol Microbiol 82: 251-264.
-
(2011)
Mol Microbiol
, vol.82
, pp. 251-264
-
-
Blasco, B.1
Stenta, M.2
Alonso-Sarduy, L.3
Dietler, G.4
Peraro, M.D.5
-
11
-
-
80052011957
-
EspR, a key regulator of Mycobacterium tuberculosis virulence, adopts a unique dimeric structure among helix-turn-helix proteins
-
Rosenberg OS, Dovey C, Tempesta M, Robbins RA, Finer-Moore JS, et al. (2011) EspR, a key regulator of Mycobacterium tuberculosis virulence, adopts a unique dimeric structure among helix-turn-helix proteins. Proc Natl Acad Sci U S A 108: 13450-13455.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 13450-13455
-
-
Rosenberg, O.S.1
Dovey, C.2
Tempesta, M.3
Robbins, R.A.4
Finer-Moore, J.S.5
-
12
-
-
78649640318
-
Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression
-
Browning DF, Grainger DC, Busby SJ, (2010) Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression. Curr Opin Microbiol 13: 773-780.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 773-780
-
-
Browning, D.F.1
Grainger, D.C.2
Busby, S.J.3
-
13
-
-
76949089832
-
Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
-
Dillon SC, Dorman CJ, (2010) Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat Rev Microbiol 8: 185-195.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 185-195
-
-
Dillon, S.C.1
Dorman, C.J.2
-
14
-
-
65549122479
-
Dissecting regulatory networks in host-pathogen interaction using chIP-on-chip technology
-
Sala C, Grainger DC, Cole ST, (2009) Dissecting regulatory networks in host-pathogen interaction using chIP-on-chip technology. Cell Host Microbe 5: 430-437.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 430-437
-
-
Sala, C.1
Grainger, D.C.2
Cole, S.T.3
-
15
-
-
34547726221
-
Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli
-
Becq J, Gutierrez MC, Rosas-Magallanes V, Rauzier J, Gicquel B, et al. (2007) Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli. Mol Biol Evol 24: 1861-1871.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1861-1871
-
-
Becq, J.1
Gutierrez, M.C.2
Rosas-Magallanes, V.3
Rauzier, J.4
Gicquel, B.5
-
16
-
-
0000812428
-
Identification of a virulence gene cluster of Mycobacterium tuberculosis by signature-tagged transposon mutagenesis
-
Camacho LR, Ensergueix D, Perez E, Gicquel B, Guilhot C, (1999) Identification of a virulence gene cluster of Mycobacterium tuberculosis by signature-tagged transposon mutagenesis. Mol Microbiol 34: 257-267.
-
(1999)
Mol Microbiol
, vol.34
, pp. 257-267
-
-
Camacho, L.R.1
Ensergueix, D.2
Perez, E.3
Gicquel, B.4
Guilhot, C.5
-
17
-
-
0033523971
-
Complex lipid determines tissue-specific replication of Mycobacterium tuberculosis in mice
-
Cox JS, Chen B, McNeil M, Jacobs WR Jr, (1999) Complex lipid determines tissue-specific replication of Mycobacterium tuberculosis in mice. Nature 402: 79-83.
-
(1999)
Nature
, vol.402
, pp. 79-83
-
-
Cox, J.S.1
Chen, B.2
McNeil, M.3
Jacobs Jr., W.R.4
-
18
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393: 537-544.
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
-
19
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, et al. (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: W202-208.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
-
20
-
-
62849091862
-
Pristinamycin-inducible gene regulation in mycobacteria
-
Forti F, Crosta A, Ghisotti D, (2009) Pristinamycin-inducible gene regulation in mycobacteria. J Biotechnol 140: 270-277.
-
(2009)
J Biotechnol
, vol.140
, pp. 270-277
-
-
Forti, F.1
Crosta, A.2
Ghisotti, D.3
-
21
-
-
77957828951
-
Sigma factor F does not prevent rifampin inhibition of RNA polymerase or cause rifampin tolerance in Mycobacterium tuberculosis
-
Hartkoorn RC, Sala C, Magnet SJ, Chen JM, Pojer F, et al. (2010) Sigma factor F does not prevent rifampin inhibition of RNA polymerase or cause rifampin tolerance in Mycobacterium tuberculosis. J Bacteriol 192: 5472-5479.
-
(2010)
J Bacteriol
, vol.192
, pp. 5472-5479
-
-
Hartkoorn, R.C.1
Sala, C.2
Magnet, S.J.3
Chen, J.M.4
Pojer, F.5
-
22
-
-
70849086538
-
Why and how bacteria localize proteins
-
Shapiro L, McAdams HH, Losick R, (2009) Why and how bacteria localize proteins. Science 326: 1225-1228.
-
(2009)
Science
, vol.326
, pp. 1225-1228
-
-
Shapiro, L.1
McAdams, H.H.2
Losick, R.3
-
23
-
-
29644438456
-
Dissection of ESAT-6 system 1 of Mycobacterium tuberculosis and impact on immunogenicity and virulence
-
Brodin P, Majlessi L, Marsollier L, de Jonge MI, Bottai D, et al. (2006) Dissection of ESAT-6 system 1 of Mycobacterium tuberculosis and impact on immunogenicity and virulence. Infect immun 74: 88-98.
-
(2006)
Infect Immun
, vol.74
, pp. 88-98
-
-
Brodin, P.1
Majlessi, L.2
Marsollier, L.3
de Jonge, M.I.4
Bottai, D.5
-
24
-
-
18444369954
-
The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
-
Dame RT, (2005) The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin. Mol Microbiol 56: 858-870.
-
(2005)
Mol Microbiol
, vol.56
, pp. 858-870
-
-
Dame, R.T.1
-
25
-
-
33750954891
-
Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis
-
Skoko D, Yoo D, Bai H, Schnurr B, Yan J, et al. (2006) Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis. J Mol Biol 364: 777-798.
-
(2006)
J Mol Biol
, vol.364
, pp. 777-798
-
-
Skoko, D.1
Yoo, D.2
Bai, H.3
Schnurr, B.4
Yan, J.5
-
26
-
-
0032716841
-
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
-
Azam TA, Iwata A, Nishimura A, Ueda S, Ishihama A, (1999) Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 181: 6361-6370.
-
(1999)
J Bacteriol
, vol.181
, pp. 6361-6370
-
-
Azam, T.A.1
Iwata, A.2
Nishimura, A.3
Ueda, S.4
Ishihama, A.5
-
27
-
-
0032949025
-
Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays
-
Gordon SV, Brosch R, Billault A, Garnier T, Eiglmeier K, et al. (1999) Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays. Mol Microbiol 32: 643-655.
-
(1999)
Mol Microbiol
, vol.32
, pp. 643-655
-
-
Gordon, S.V.1
Brosch, R.2
Billault, A.3
Garnier, T.4
Eiglmeier, K.5
-
28
-
-
34247614404
-
Determination of the minimal acid-inducible promoter region of the lipF gene from Mycobacterium tuberculosis
-
Richter L, Tai W, Felton J, Saviola B, (2007) Determination of the minimal acid-inducible promoter region of the lipF gene from Mycobacterium tuberculosis. Gene 395: 22-28.
-
(2007)
Gene
, vol.395
, pp. 22-28
-
-
Richter, L.1
Tai, W.2
Felton, J.3
Saviola, B.4
-
29
-
-
55649113699
-
PhoP: a missing piece in the intricate puzzle of Mycobacterium tuberculosis virulence
-
Gonzalo-Asensio J, Mostowy S, Harders-Westerveen J, Huygen K, Hernandez-Pando R, et al. (2008) PhoP: a missing piece in the intricate puzzle of Mycobacterium tuberculosis virulence. PLoS ONE 3: e3496.
-
(2008)
PLoS ONE
, vol.3
-
-
Gonzalo-Asensio, J.1
Mostowy, S.2
Harders-Westerveen, J.3
Huygen, K.4
Hernandez-Pando, R.5
-
30
-
-
33645307109
-
The Mycobacterium tuberculosis PhoPR two-component system regulates genes essential for virulence and complex lipid biosynthesis
-
Walters SB, Dubnau E, Kolesnikova I, Laval F, Daffe M, et al. (2006) The Mycobacterium tuberculosis PhoPR two-component system regulates genes essential for virulence and complex lipid biosynthesis. Mol Microbiol 60: 312-330.
-
(2006)
Mol Microbiol
, vol.60
, pp. 312-330
-
-
Walters, S.B.1
Dubnau, E.2
Kolesnikova, I.3
Laval, F.4
Daffe, M.5
-
31
-
-
19944418509
-
A member of the cAMP receptor protein family of transcription regulators in Mycobacterium tuberculosis is required for virulence in mice and controls transcription of the rpfA gene coding for a resuscitation promoting factor
-
Rickman L, Scott C, Hunt DM, Hutchinson T, Menendez MC, et al. (2005) A member of the cAMP receptor protein family of transcription regulators in Mycobacterium tuberculosis is required for virulence in mice and controls transcription of the rpfA gene coding for a resuscitation promoting factor. Mol Microbiol 56: 1274-1286.
-
(2005)
Mol Microbiol
, vol.56
, pp. 1274-1286
-
-
Rickman, L.1
Scott, C.2
Hunt, D.M.3
Hutchinson, T.4
Menendez, M.C.5
-
32
-
-
77950419841
-
Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis
-
Gordon BR, Li Y, Wang L, Sintsova A, van Bakel H, et al. (2010) Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 107: 5154-5159.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 5154-5159
-
-
Gordon, B.R.1
Li, Y.2
Wang, L.3
Sintsova, A.4
van Bakel, H.5
-
33
-
-
69949128619
-
Identification of Rv3852 as a nucleoid-associated protein in Mycobacterium tuberculosis
-
Werlang IC, Schneider CZ, Mendonca JD, Palma MS, Basso LA, et al. (2009) Identification of Rv3852 as a nucleoid-associated protein in Mycobacterium tuberculosis. Microbiology 155: 2652-2663.
-
(2009)
Microbiology
, vol.155
, pp. 2652-2663
-
-
Werlang, I.C.1
Schneider, C.Z.2
Mendonca, J.D.3
Palma, M.S.4
Basso, L.A.5
-
34
-
-
60649096132
-
Genome-wide regulon and crystal structure of BlaI (Rv1846c) from Mycobacterium tuberculosis
-
Sala C, Haouz A, Saul FA, Miras I, Rosenkrands I, et al. (2009) Genome-wide regulon and crystal structure of BlaI (Rv1846c) from Mycobacterium tuberculosis. Mol Microbiol 71: 1102-1116.
-
(2009)
Mol Microbiol
, vol.71
, pp. 1102-1116
-
-
Sala, C.1
Haouz, A.2
Saul, F.A.3
Miras, I.4
Rosenkrands, I.5
-
35
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
36
-
-
79952261359
-
Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver
-
Rey G, Cesbron F, Rougemont J, Reinke H, Brunner M, et al. (2011) Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PLoS Biol 9: e1000595.
-
(2011)
PLoS Biol
, vol.9
-
-
Rey, G.1
Cesbron, F.2
Rougemont, J.3
Reinke, H.4
Brunner, M.5
-
37
-
-
78651320424
-
The UCSC Genome Browser database: update 2011
-
Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D, et al. (2011) The UCSC Genome Browser database: update 2011. Nucleic acids res 39: D876-882.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Fujita, P.A.1
Rhead, B.2
Zweig, A.S.3
Hinrichs, A.S.4
Karolchik, D.5
-
38
-
-
77951947707
-
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
-
Zhu LJ, Gazin C, Lawson ND, Pages H, Lin SM, et al. (2010) ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data. BMC bioinformatics 11: 237.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 237
-
-
Zhu, L.J.1
Gazin, C.2
Lawson, N.D.3
Pages, H.4
Lin, S.M.5
-
39
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic acids res 30: 207-210.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
40
-
-
0347511902
-
Individual Mycobacterium tuberculosis resuscitation-promoting factor homologues are dispensable for growth in vitro and in vivo
-
Tufariello JM, Jacobs WR Jr, Chan J, (2004) Individual Mycobacterium tuberculosis resuscitation-promoting factor homologues are dispensable for growth in vitro and in vivo. Infect immun 72: 515-526.
-
(2004)
Infect Immun
, vol.72
, pp. 515-526
-
-
Tufariello, J.M.1
Jacobs Jr., W.R.2
Chan, J.3
|