-
1
-
-
62249207950
-
Assessment of potential life-cycle energy and greenhouse gas emission effects from using corn-based butanol as a transportation fuel
-
Wu M, Wang M, Liu JH, Huo H. Assessment of potential life-cycle energy and greenhouse gas emission effects from using corn-based butanol as a transportation fuel. Biotechnol Progr 2008, 24(6):1204-1214.
-
(2008)
Biotechnol Progr
, vol.24
, Issue.6
, pp. 1204-1214
-
-
Wu, M.1
Wang, M.2
Liu, J.H.3
Huo, H.4
-
2
-
-
0028889638
-
Taxonomy and phylogeny of industrial solvent-producing clostridia
-
10.1099/00207713-45-4-693, 7547288
-
Keis S, Bennett CF, Ward VK, Jones DT. Taxonomy and phylogeny of industrial solvent-producing clostridia. Int J Syst Bacteriol 1995, 45(4):693-705. 10.1099/00207713-45-4-693, 7547288.
-
(1995)
Int J Syst Bacteriol
, vol.45
, Issue.4
, pp. 693-705
-
-
Keis, S.1
Bennett, C.F.2
Ward, V.K.3
Jones, D.T.4
-
3
-
-
42649128257
-
Fermentation of dried distillers' grains and solubles (DDGS) hydrolysates to solvents and value-added products by solventogenic clostridia
-
Ezeji T, Blaschek HP. Fermentation of dried distillers' grains and solubles (DDGS) hydrolysates to solvents and value-added products by solventogenic clostridia. Bioresource Technol 2008, 99(12):5232-5242.
-
(2008)
Bioresource Technol
, vol.99
, Issue.12
, pp. 5232-5242
-
-
Ezeji, T.1
Blaschek, H.P.2
-
4
-
-
65549099632
-
Structure and complexity of a bacterial transcriptome
-
10.1128/JB.00122-09, 2687165, 19304856
-
Passalacqua KD, Varadarajan A, Ondov BD, Okou DT, Zwick ME, Bergman NH. Structure and complexity of a bacterial transcriptome. J Bacteriol 2009, 191(10):3203-3211. 10.1128/JB.00122-09, 2687165, 19304856.
-
(2009)
J Bacteriol
, vol.191
, Issue.10
, pp. 3203-3211
-
-
Passalacqua, K.D.1
Varadarajan, A.2
Ondov, B.D.3
Okou, D.T.4
Zwick, M.E.5
Bergman, N.H.6
-
5
-
-
68249102779
-
A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi
-
Perkins TT, Kingsley RA, Fookes MC, Gardner PP, James KD, Yu L, Assefa SA, He M, Croucher NJ, Pickard DJ, et al. A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi. PLoS Genet 2009, 5(7).
-
(2009)
PLoS Genet
, vol.5
, Issue.7
-
-
Perkins, T.T.1
Kingsley, R.A.2
Fookes, M.C.3
Gardner, P.P.4
James, K.D.5
Yu, L.6
Assefa, S.A.7
He, M.8
Croucher, N.J.9
Pickard, D.J.10
-
6
-
-
74949137952
-
A single-base resolution map of an archaeal transcriptome
-
10.1101/gr.100396.109, 2798825, 19884261
-
Wurtzel O, Sapra R, Chen F, Zhu YW, Simmons BA, Sorek R. A single-base resolution map of an archaeal transcriptome. Genome Res 2010, 20(1):133-141. 10.1101/gr.100396.109, 2798825, 19884261.
-
(2010)
Genome Res
, vol.20
, Issue.1
, pp. 133-141
-
-
Wurtzel, O.1
Sapra, R.2
Chen, F.3
Zhu, Y.W.4
Simmons, B.A.5
Sorek, R.6
-
7
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
10.1038/nmeth.1226, 18516045
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5(7):621-628. 10.1038/nmeth.1226, 18516045.
-
(2008)
Nat Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
8
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
10.1126/science.1158441, 2951732, 18451266
-
Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 2008, 320:1344-1349. 10.1126/science.1158441, 2951732, 18451266.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
9
-
-
56649123520
-
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
-
10.1093/bioinformatics/btn529, 2606163,2606163, 18845581
-
Carver T, Berriman M, Tivey A, Patel C, Bohme U, Barrell BG, Parkhill J, Rajandream M-A. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 2008, 24(23):2672-2676. 10.1093/bioinformatics/btn529, 2606163,2606163, 18845581.
-
(2008)
Bioinformatics
, vol.24
, Issue.23
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
Barrell, B.G.6
Parkhill, J.7
Rajandream, M.-A.8
-
10
-
-
58049208278
-
DNAPlotter: circular and linear interactive genome visualization
-
10.1093/bioinformatics/btn578, 2612626,2612626, 18990721
-
Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J. DNAPlotter: circular and linear interactive genome visualization. Bioinformatics 2009, 25(1):119-120. 10.1093/bioinformatics/btn578, 2612626,2612626, 18990721.
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 119-120
-
-
Carver, T.1
Thomson, N.2
Bleasby, A.3
Berriman, M.4
Parkhill, J.5
-
11
-
-
14044268828
-
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis
-
Steil L, Serrano M, Henriques AO, Volker U. Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis. Microbiology-(UK) 2005, 151:399-420.
-
(2005)
Microbiology-(UK)
, vol.151
, pp. 399-420
-
-
Steil, L.1
Serrano, M.2
Henriques, A.O.3
Volker, U.4
-
12
-
-
33645097172
-
The forespore line of gene expression in Bacillus subtilis
-
10.1016/j.jmb.2006.01.059, 16497325
-
Wang ST, Setlow B, Conlon EM, Lyon JL, Imamura D, Sato T, Setlow P, Losick R, Eichenberger P. The forespore line of gene expression in Bacillus subtilis. J Mol Biol 2006, 358(1):16-37. 10.1016/j.jmb.2006.01.059, 16497325.
-
(2006)
J Mol Biol
, vol.358
, Issue.1
, pp. 16-37
-
-
Wang, S.T.1
Setlow, B.2
Conlon, E.M.3
Lyon, J.L.4
Imamura, D.5
Sato, T.6
Setlow, P.7
Losick, R.8
Eichenberger, P.9
-
13
-
-
57449087447
-
Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 and the hyper-butanol-producing mutant BA101 during the shift from acidogenesis to solventogenesis
-
Shi Z, Blaschek HP. Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 and the hyper-butanol-producing mutant BA101 during the shift from acidogenesis to solventogenesis. Appl Environ Microb 2008, 74(24):7709-7714.
-
(2008)
Appl Environ Microb
, vol.74
, Issue.24
, pp. 7709-7714
-
-
Shi, Z.1
Blaschek, H.P.2
-
14
-
-
34249708917
-
High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons
-
10.1038/nbt1294, 17401361
-
McGrath PT, Lee H, Zhang L, Iniesta AA, Hottes AK, Tan MH, Hillson NJ, Hu P, Shapiro L, McAdams HH. High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons. Nat Biotechnol 2007, 25(5):584-592. 10.1038/nbt1294, 17401361.
-
(2007)
Nat Biotechnol
, vol.25
, Issue.5
, pp. 584-592
-
-
McGrath, P.T.1
Lee, H.2
Zhang, L.3
Iniesta, A.A.4
Hottes, A.K.5
Tan, M.H.6
Hillson, N.J.7
Hu, P.8
Shapiro, L.9
McAdams, H.H.10
-
15
-
-
23144463910
-
RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
-
10.1093/nar/gki445, 1160206, 15980564
-
Abreu-Goodger C, Merino E. RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. Nucleic Acids Res 2005, 33:W690-W692. 10.1093/nar/gki445, 1160206, 15980564.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Abreu-Goodger, C.1
Merino, E.2
-
16
-
-
13444252847
-
Rfam: annotating non-coding RNAs in complete genomes
-
540035, 15608160
-
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res 2005, 33:D121-D124. 540035, 15608160.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
17
-
-
0033788729
-
Differential expression of genes within the gap operon of Clostridium acetobutylicum
-
Schreiber W, Dürre P. Differential expression of genes within the gap operon of Clostridium acetobutylicum. Anaerobe 2000, 6(5):291-297.
-
(2000)
Anaerobe
, vol.6
, Issue.5
, pp. 291-297
-
-
Schreiber, W.1
Dürre, P.2
-
18
-
-
0034604382
-
Prediction of transcription terminators in bacterial genomes
-
10.1006/jmbi.2000.3836, 10926490
-
Ermolaeva MD, Khalak HG, White O, Smith HO, Salzberg SL. Prediction of transcription terminators in bacterial genomes. J Mol Biol 2000, 301(1):27-33. 10.1006/jmbi.2000.3836, 10926490.
-
(2000)
J Mol Biol
, vol.301
, Issue.1
, pp. 27-33
-
-
Ermolaeva, M.D.1
Khalak, H.G.2
White, O.3
Smith, H.O.4
Salzberg, S.L.5
-
19
-
-
0028866778
-
The central metabolic pathway from acetyl-CoA to butyryl-CoA in Clostridium acetobutylicum
-
Bennett GN, Rudolph FB. The central metabolic pathway from acetyl-CoA to butyryl-CoA in Clostridium acetobutylicum. Fems Microbiol Rev 1995, 17(3):241-249.
-
(1995)
Fems Microbiol Rev
, vol.17
, Issue.3
, pp. 241-249
-
-
Bennett, G.N.1
Rudolph, F.B.2
-
20
-
-
0030059857
-
Cloning, sequencing, and expression of clustered genes encoding β-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824
-
178046, 8655474
-
Boynton ZL, Bennett GN, Rudolph FB. Cloning, sequencing, and expression of clustered genes encoding β-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824. J Bacteriol 1996, 178(11):3015-3024. 178046, 8655474.
-
(1996)
J Bacteriol
, vol.178
, Issue.11
, pp. 3015-3024
-
-
Boynton, Z.L.1
Bennett, G.N.2
Rudolph, F.B.3
-
21
-
-
0031802836
-
Cloning, sequence, and expression of the phosphofructokinase gene of Clostridium acetobutylicum ATCC 824 in Escherichia coli
-
10.1007/s002849900330, 9625784
-
Belouski E, Watson DE, Bennett GN. Cloning, sequence, and expression of the phosphofructokinase gene of Clostridium acetobutylicum ATCC 824 in Escherichia coli. Curr Microbiol 1998, 37(1):17-22. 10.1007/s002849900330, 9625784.
-
(1998)
Curr Microbiol
, vol.37
, Issue.1
, pp. 17-22
-
-
Belouski, E.1
Watson, D.E.2
Bennett, G.N.3
-
22
-
-
0029762151
-
Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824
-
Boynton ZL, Bennett GN, Rudolph FB. Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824. Appl Environ Microb 1996, 62(8):2758-2766.
-
(1996)
Appl Environ Microb
, vol.62
, Issue.8
, pp. 2758-2766
-
-
Boynton, Z.L.1
Bennett, G.N.2
Rudolph, F.B.3
-
23
-
-
0027382981
-
Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824
-
10.1016/0378-1119(93)90182-3, 8244020
-
Walter KA, Nair RV, Cary JW, Bennett GN, Papoutsakis ET. Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824. Gene 1993, 134(1):107-111. 10.1016/0378-1119(93)90182-3, 8244020.
-
(1993)
Gene
, vol.134
, Issue.1
, pp. 107-111
-
-
Walter, K.A.1
Nair, R.V.2
Cary, J.W.3
Bennett, G.N.4
Papoutsakis, E.T.5
-
24
-
-
38349038031
-
Formation of solvents in clostridia
-
London: CRC press, Düerre P
-
Düerre P. Formation of solvents in clostridia. Handbook on clostridia 2005, 671-693. London: CRC press, Düerre P.
-
(2005)
Handbook on clostridia
, pp. 671-693
-
-
Düerre, P.1
-
25
-
-
0030922888
-
The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain
-
179415, 9286999
-
Cornillot E, Nair RV, Papoutsakis ET, Soucaille P. The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain. J Bacteriol 1997, 179(17):5442-5447. 179415, 9286999.
-
(1997)
J Bacteriol
, vol.179
, Issue.17
, pp. 5442-5447
-
-
Cornillot, E.1
Nair, R.V.2
Papoutsakis, E.T.3
Soucaille, P.4
-
26
-
-
0025694980
-
Cloning, sequencing, and molecular analysis of the acetoacetate decarboxylase gene region from Clostridium acetobutylicum
-
210810, 2254264
-
Gerischer U, Dürre P. Cloning, sequencing, and molecular analysis of the acetoacetate decarboxylase gene region from Clostridium acetobutylicum. J Bacteriol 1990, 172(12):6907-6918. 210810, 2254264.
-
(1990)
J Bacteriol
, vol.172
, Issue.12
, pp. 6907-6918
-
-
Gerischer, U.1
Dürre, P.2
-
27
-
-
0027459831
-
Sequence and arrangement of genes encoding enzymes of the acetone-production pathway of Clostridium acetobutylicum ATCC 824
-
10.1016/0378-1119(93)90545-E, 8423010
-
Petersen DJ, Cary JW, Vanderleyden J, Bennett GN. Sequence and arrangement of genes encoding enzymes of the acetone-production pathway of Clostridium acetobutylicum ATCC 824. Gene 1993, 123(1):93-97. 10.1016/0378-1119(93)90545-E, 8423010.
-
(1993)
Gene
, vol.123
, Issue.1
, pp. 93-97
-
-
Petersen, D.J.1
Cary, J.W.2
Vanderleyden, J.3
Bennett, G.N.4
-
28
-
-
0033013654
-
Effect of acetate on molecular and physiological aspects of Clostridium beijerinckii NCIMB 8052 solvent production and strain degeneration
-
Chen CK, Blaschek HP. Effect of acetate on molecular and physiological aspects of Clostridium beijerinckii NCIMB 8052 solvent production and strain degeneration. Appl Environ Microb 1999, 65(2):499-505.
-
(1999)
Appl Environ Microb
, vol.65
, Issue.2
, pp. 499-505
-
-
Chen, C.K.1
Blaschek, H.P.2
-
29
-
-
80054840495
-
The cloning of a putative regulatory gene and the sol region from Clostridium beijerinckii
-
Virginia Polytechnic Institute and State University, Department of Biochemistry
-
Rui H. The cloning of a putative regulatory gene and the sol region from Clostridium beijerinckii. Master thesis 1999, Virginia Polytechnic Institute and State University, Department of Biochemistry.
-
(1999)
Master thesis
-
-
Rui, H.1
-
30
-
-
33846471945
-
Characterization of the sol operon in butanol-hyperproducing Clostridium saccharoperbutylacetonicum strain N1-4 and its degeneration mechanism
-
10.1271/bbb.60370, 17213660
-
Kosaka T, Nakayama S, Nakaya K, Yoshino S, Furukawa K. Characterization of the sol operon in butanol-hyperproducing Clostridium saccharoperbutylacetonicum strain N1-4 and its degeneration mechanism. Biosci Biotechnol Biochem 2007, 71(1):58-68. 10.1271/bbb.60370, 17213660.
-
(2007)
Biosci Biotechnol Biochem
, vol.71
, Issue.1
, pp. 58-68
-
-
Kosaka, T.1
Nakayama, S.2
Nakaya, K.3
Yoshino, S.4
Furukawa, K.5
-
31
-
-
3042565140
-
Transcriptional organization of the Clostridium acetobutylicum genome
-
10.1093/nar/gkh509, 390361, 15060177
-
Paredes CJ, Rigoutsos I, Papoutsakis ET. Transcriptional organization of the Clostridium acetobutylicum genome. Nucleic Acids Res 2004, 32(6):1973-1981. 10.1093/nar/gkh509, 390361, 15060177.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.6
, pp. 1973-1981
-
-
Paredes, C.J.1
Rigoutsos, I.2
Papoutsakis, E.T.3
-
32
-
-
0028882778
-
Expression of heat shock genes in Clostridium acetobutylicum
-
10.1111/j.1574-6976.1995.tb00217.x, 7576772
-
Bahl H, Muller H, Behrens S, Joseph H, Narberhaus F. Expression of heat shock genes in Clostridium acetobutylicum. Fems Microbiol Rev 1995, 17(3):341-348. 10.1111/j.1574-6976.1995.tb00217.x, 7576772.
-
(1995)
Fems Microbiol Rev
, vol.17
, Issue.3
, pp. 341-348
-
-
Bahl, H.1
Muller, H.2
Behrens, S.3
Joseph, H.4
Narberhaus, F.5
-
33
-
-
0041527249
-
Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program
-
Tomas CA, Welker NE, Papoutsakis ET. Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program. Appl Environ Microb 2003, 69(8):4951-4965.
-
(2003)
Appl Environ Microb
, vol.69
, Issue.8
, pp. 4951-4965
-
-
Tomas, C.A.1
Welker, N.E.2
Papoutsakis, E.T.3
-
34
-
-
1642396325
-
Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum
-
10.1128/JB.186.7.2006-2018.2004, 374415, 15028684
-
Tomas CA, Beamish J, Papoutsakis ET. Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum. J Bacteriol 2004, 186(7):2006-2018. 10.1128/JB.186.7.2006-2018.2004, 374415, 15028684.
-
(2004)
J Bacteriol
, vol.186
, Issue.7
, pp. 2006-2018
-
-
Tomas, C.A.1
Beamish, J.2
Papoutsakis, E.T.3
-
35
-
-
0037872824
-
Biosynthesis and function of membrane lipids
-
Washington, D.C.: ASM Press, Sonenshein A, Hoch J, Losick R
-
de Mendoza D, Schujman GE, Aguilar PS. Biosynthesis and function of membrane lipids. Bacillus subtilis and its closest relatives: from genes to cells 2002, 43-55. Washington, D.C.: ASM Press, Sonenshein A, Hoch J, Losick R.
-
(2002)
Bacillus subtilis and its closest relatives: from genes to cells
, pp. 43-55
-
-
de Mendoza, D.1
Schujman, G.E.2
Aguilar, P.S.3
-
36
-
-
23144452801
-
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
-
1160247, 15980510
-
Besemer J, Borodovsky M. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res 2005, 33(Suppl 2):W451-W454. 1160247, 15980510.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.SUPPL. 2
-
-
Besemer, J.1
Borodovsky, M.2
-
37
-
-
77955214742
-
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
-
10.1186/1471-2229-10-160, 3017786, 20687943
-
Severin A, Woody J, Bolon Y-T, Joseph B, Diers B, Farmer A, Muehlbauer G, Nelson R, Grant D, Specht J, et al. RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome. BMC Plant Biology 2010, 10(1):160. 10.1186/1471-2229-10-160, 3017786, 20687943.
-
(2010)
BMC Plant Biology
, vol.10
, Issue.1
, pp. 160
-
-
Severin, A.1
Woody, J.2
Bolon, Y.-T.3
Joseph, B.4
Diers, B.5
Farmer, A.6
Muehlbauer, G.7
Nelson, R.8
Grant, D.9
Specht, J.10
-
38
-
-
0343183683
-
A preliminary linkage test with Agouti and Undulated mice; The fifth linkage-group
-
Fisher RA. A preliminary linkage test with Agouti and Undulated mice; The fifth linkage-group. Heredity London 1949, 3:229-241.
-
(1949)
Heredity London
, vol.3
, pp. 229-241
-
-
Fisher, R.A.1
-
39
-
-
77957343695
-
The extinction dynamics of bacterial pseudogenes
-
Kuo CH, Ochman H. The extinction dynamics of bacterial pseudogenes. PLoS Genet 2010, 6(8).
-
(2010)
PLoS Genet
, vol.6
, Issue.8
-
-
Kuo, C.H.1
Ochman, H.2
-
40
-
-
20144362746
-
Recognizing the pseudogenes in bacterial genomes
-
10.1093/nar/gki631, 1142405, 15933207
-
Lerat E, Ochman H. Recognizing the pseudogenes in bacterial genomes. Nucleic Acids Res 2005, 33(10):3125-3132. 10.1093/nar/gki631, 1142405, 15933207.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.10
, pp. 3125-3132
-
-
Lerat, E.1
Ochman, H.2
-
41
-
-
0038414560
-
An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene
-
10.1038/nature01535, 12721631
-
Hirotsune S, Yoshida N, Chen A, Garrett L, Sugiyama F, Takahashi S, Yagami K-I, Wynshaw-Boris A, Yoshiki A. An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene. Nature 2003, 423(6935):91-96. 10.1038/nature01535, 12721631.
-
(2003)
Nature
, vol.423
, Issue.6935
, pp. 91-96
-
-
Hirotsune, S.1
Yoshida, N.2
Chen, A.3
Garrett, L.4
Sugiyama, F.5
Takahashi, S.6
Yagami, K.-I.7
Wynshaw-Boris, A.8
Yoshiki, A.9
-
42
-
-
34250377325
-
Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
-
10.1101/gr.5586307, 1891343, 17568002
-
Zheng DY, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu YT, Denoeud F, Antonarakis SE, Snyder M, et al. Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution. Genome Res 2007, 17(6):839-851. 10.1101/gr.5586307, 1891343, 17568002.
-
(2007)
Genome Res
, vol.17
, Issue.6
, pp. 839-851
-
-
Zheng, D.Y.1
Frankish, A.2
Baertsch, R.3
Kapranov, P.4
Reymond, A.5
Choo, S.W.6
Lu, Y.T.7
Denoeud, F.8
Antonarakis, S.E.9
Snyder, M.10
-
43
-
-
33646941894
-
Genome-wide survey for biologically functional pseudogenes
-
10.1371/journal.pcbi.0020046, 1456316, 16680195
-
Svensson T, Arvestad L, Lagergren J. Genome-wide survey for biologically functional pseudogenes. PLoS Comput Biol 2006, 2(5):e46. 10.1371/journal.pcbi.0020046, 1456316, 16680195.
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.5
-
-
Svensson, T.1
Arvestad, L.2
Lagergren, J.3
-
44
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
10.1038/nature07002, 18488015
-
Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bahler J. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 2008, 453(7199):1239-1243. 10.1038/nature07002, 18488015.
-
(2008)
Nature
, vol.453
, Issue.7199
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.J.7
Rogers, J.8
Bahler, J.9
-
45
-
-
57149085481
-
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
-
10.1093/nar/gkn705, 2588528, 18927111
-
t Hoen PAC, Ariyurek Y, Thygesen HH, Vreugdenhil E, Vossen R, de Menezes RX, Boer JM, van Ommen GJB, den Dunnen JT. Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res 2008, 36(21):e141. 10.1093/nar/gkn705, 2588528, 18927111.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.21
-
-
t Hoen, P.A.C.1
Ariyurek, Y.2
Thygesen, H.H.3
Vreugdenhil, E.4
Vossen, R.5
de Menezes, R.X.6
Boer, J.M.7
van Ommen, G.J.B.8
den Dunnen, J.T.9
-
46
-
-
0025760959
-
Isolation and characterization of Clostridium acetobutylicum mutants with enhanced amylolytic activity
-
Annous BA, Blaschek HP. Isolation and characterization of Clostridium acetobutylicum mutants with enhanced amylolytic activity. Appl Environ Microb 1991, 57(9):2544-2548.
-
(1991)
Appl Environ Microb
, vol.57
, Issue.9
, pp. 2544-2548
-
-
Annous, B.A.1
Blaschek, H.P.2
-
47
-
-
0034907204
-
Soy molasses as fermentation substrate for production of butanol using Clostridium beijerinckii BA101
-
Qureshi N, Lolas A, Biaschek HP. Soy molasses as fermentation substrate for production of butanol using Clostridium beijerinckii BA101. J Ind Microbiol Biot 2001, 26(5):290-295.
-
(2001)
J Ind Microbiol Biot
, vol.26
, Issue.5
, pp. 290-295
-
-
Qureshi, N.1
Lolas, A.2
Biaschek, H.P.3
-
48
-
-
0036751734
-
Production of butanol from starch-based waste packing peanuts and agricultural waste
-
Jesse TW, Ezeji TC, Qureshi N, Blaschek HP. Production of butanol from starch-based waste packing peanuts and agricultural waste. J Ind Microbiol Biot 2002, 29(3):117-123.
-
(2002)
J Ind Microbiol Biot
, vol.29
, Issue.3
, pp. 117-123
-
-
Jesse, T.W.1
Ezeji, T.C.2
Qureshi, N.3
Blaschek, H.P.4
-
49
-
-
0041912376
-
Production of acetone, butanol and ethanol by Clostridium beijerinckii BA101 and in situ recovery by gas stripping
-
Ezeji TC, Qureshi N, Blaschek HP. Production of acetone, butanol and ethanol by Clostridium beijerinckii BA101 and in situ recovery by gas stripping. World J Microb Biot 2003, 19(6):595-603.
-
(2003)
World J Microb Biot
, vol.19
, Issue.6
, pp. 595-603
-
-
Ezeji, T.C.1
Qureshi, N.2
Blaschek, H.P.3
-
50
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
10.1101/gr.078212.108, 2577856, 18714091
-
Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18(11):1851-1858. 10.1101/gr.078212.108, 2577856, 18714091.
-
(2008)
Genome Res
, vol.18
, Issue.11
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
|