메뉴 건너뛰기




Volumn 66, Issue 2, 2013, Pages 539-550

Reprint of: Using nuclear gene data for plant phylogenetics: Progress and prospects

Author keywords

Next generation sequencing; Phylogenetics; Phylogenomics; Plant nuclear genes; Polyploidy

Indexed keywords


EID: 84873867729     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2013.01.005     Document Type: Review
Times cited : (48)

References (200)
  • 1
    • 0030993343 scopus 로고    scopus 로고
    • Genetic control of flower shape in Antirrhinum
    • Almeida J., Rocheta M., Galego L. Genetic control of flower shape in Antirrhinum. Development 1997, 124:1387-1392.
    • (1997) Development , vol.124 , pp. 1387-1392
    • Almeida, J.1    Rocheta, M.2    Galego, L.3
  • 2
    • 33745912988 scopus 로고    scopus 로고
    • Systematics and phylogeny of the Brassicaceae (Cruciferae): an overview
    • Al-Shehbaz I.A., Beilstein M.A., Kellogg E.A. Systematics and phylogeny of the Brassicaceae (Cruciferae): an overview. Plant Syst. Evol. 2006, 259:89-120.
    • (2006) Plant Syst. Evol. , vol.259 , pp. 89-120
    • Al-Shehbaz, I.A.1    Beilstein, M.A.2    Kellogg, E.A.3
  • 3
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • Alvarez I., Wendel J.F. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 2003, 29:417-434.
    • (2003) Mol. Phylogenet. Evol. , vol.29 , pp. 417-434
    • Alvarez, I.1    Wendel, J.F.2
  • 4
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • Angiosperm Phylogeny Group
    • Angiosperm Phylogeny Group An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot. J. Linn. Soc. 2009, 161:105-121.
    • (2009) Bot. J. Linn. Soc. , vol.161 , pp. 105-121
  • 5
    • 4444370014 scopus 로고    scopus 로고
    • Phylogenetic utility of the LEAFY/FLORICAULA gene in the Caesalpinioideae (Leguminosae), gene duplication and a novel insertion
    • Archambault A., Bruneau A. Phylogenetic utility of the LEAFY/FLORICAULA gene in the Caesalpinioideae (Leguminosae), gene duplication and a novel insertion. Syst. Bot. 2004, 29:609-626.
    • (2004) Syst. Bot. , vol.29 , pp. 609-626
    • Archambault, A.1    Bruneau, A.2
  • 8
    • 0032233179 scopus 로고    scopus 로고
    • Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia
    • Baldwin B.G., Markos S. Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia. Mol. Phylogenet. Evol. 1998, 10:449-463.
    • (1998) Mol. Phylogenet. Evol. , vol.10 , pp. 449-463
    • Baldwin, B.G.1    Markos, S.2
  • 10
    • 54149092976 scopus 로고    scopus 로고
    • Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years
    • Barker M.S., Kane N.C., Matvienko M., Kozik A., Michelmore R.W., Knapp S.J., Rieseberg L.H. Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol. Biol. Evol. 2008, 25:2445-2455.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 2445-2455
    • Barker, M.S.1    Kane, N.C.2    Matvienko, M.3    Kozik, A.4    Michelmore, R.W.5    Knapp, S.J.6    Rieseberg, L.H.7
  • 11
    • 77949523463 scopus 로고    scopus 로고
    • Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales
    • Barker M.S., Vogel H., Schranz M.E. Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales. Genom. Biol. Evol. 2009, 1:391-399.
    • (2009) Genom. Biol. Evol. , vol.1 , pp. 391-399
    • Barker, M.S.1    Vogel, H.2    Schranz, M.E.3
  • 13
    • 53249100678 scopus 로고    scopus 로고
    • Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited
    • Beilstein M.A., Al-Shehbaz I.A., Mathews S., Kellogg E.A. Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited. Am. J. Bot. 2008, 95:1307-1327.
    • (2008) Am. J. Bot. , vol.95 , pp. 1307-1327
    • Beilstein, M.A.1    Al-Shehbaz, I.A.2    Mathews, S.3    Kellogg, E.A.4
  • 14
    • 33746141359 scopus 로고    scopus 로고
    • Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A
    • Bennett J.R., Mathews S. Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A. Am. J. Bot. 2006, 93:1039-1051.
    • (2006) Am. J. Bot. , vol.93 , pp. 1039-1051
    • Bennett, J.R.1    Mathews, S.2
  • 15
    • 16344364319 scopus 로고    scopus 로고
    • Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae)
    • Bomblies K., Doebley J.F. Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae). Mol. Biol. Evol. 2005, 22:1082-1094.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1082-1094
    • Bomblies, K.1    Doebley, J.F.2
  • 16
    • 0036801752 scopus 로고    scopus 로고
    • The phylogenetic utility of nucleotide sequences of sorbitol 6-phosphate dehydrogenase in Prunus (Rosaceae)
    • Bortiri E., Oh S.-H., Gao F., Potter D. The phylogenetic utility of nucleotide sequences of sorbitol 6-phosphate dehydrogenase in Prunus (Rosaceae). Am. J. Bot. 2002, 89:1697-1708.
    • (2002) Am. J. Bot. , vol.89 , pp. 1697-1708
    • Bortiri, E.1    Oh, S.-H.2    Gao, F.3    Potter, D.4
  • 17
    • 0037171826 scopus 로고    scopus 로고
    • Association of dwarfism and floral induction with a grape 'green revolution' mutation
    • Boss P.K., Thomas M.R. Association of dwarfism and floral induction with a grape 'green revolution' mutation. Nature 2002, 416:847-850.
    • (2002) Nature , vol.416 , pp. 847-850
    • Boss, P.K.1    Thomas, M.R.2
  • 18
    • 78650984961 scopus 로고    scopus 로고
    • What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research
    • Brautigam A., Gowik U. What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research. Plant Biol. 2010, 12:831-841.
    • (2010) Plant Biol. , vol.12 , pp. 831-841
    • Brautigam, A.1    Gowik, U.2
  • 20
    • 0029864030 scopus 로고    scopus 로고
    • Zea ribosomal repeat evolution and substitution patterns
    • Buckler E., Holtsford T. Zea ribosomal repeat evolution and substitution patterns. Mol. Biol. Evol. 1996, 13:623-632.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 623-632
    • Buckler, E.1    Holtsford, T.2
  • 21
    • 77950946551 scopus 로고    scopus 로고
    • Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping
    • Buggs R.J.A., Chamala S., Wu W., Gao L., May G.D., Schnable P.S., Soltis D.E., Soltis P.S., Barbazuk W.B. Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol. Ecol. 2010, 19:132-146.
    • (2010) Mol. Ecol. , vol.19 , pp. 132-146
    • Buggs, R.J.A.1    Chamala, S.2    Wu, W.3    Gao, L.4    May, G.D.5    Schnable, P.S.6    Soltis, D.E.7    Soltis, P.S.8    Barbazuk, W.B.9
  • 22
    • 79955377333 scopus 로고    scopus 로고
    • Biosystematic relationships and the origins of polyploids
    • Buggs R.J.A., Soltis P.S., Soltis D.E. Biosystematic relationships and the origins of polyploids. Taxon 2011, 60:324-332.
    • (2011) Taxon , vol.60 , pp. 324-332
    • Buggs, R.J.A.1    Soltis, P.S.2    Soltis, D.E.3
  • 26
    • 0036741084 scopus 로고    scopus 로고
    • VFL, the grapevine. FLORICAULA/LEAFY ortholog, is expressed in meristematic regions independently of their fate
    • Carmona M.J., Cubas P., Marti{dotless}nez-Zapater J.M. VFL, the grapevine. FLORICAULA/LEAFY ortholog, is expressed in meristematic regions independently of their fate. Plant Physiol. 2002, 130:68-77.
    • (2002) Plant Physiol. , vol.130 , pp. 68-77
    • Carmona, M.J.1    Cubas, P.2    Martinez-Zapater, J.M.3
  • 27
    • 81255180288 scopus 로고    scopus 로고
    • Understanding plant cellulose synthases through a comprehensive investigation of the cellulose synthase family sequences
    • Carroll A., Specht C.D. Understanding plant cellulose synthases through a comprehensive investigation of the cellulose synthase family sequences. Front. Plant Sci. 2011, 2:1-11.
    • (2011) Front. Plant Sci. , vol.2 , pp. 1-11
    • Carroll, A.1    Specht, C.D.2
  • 28
    • 0022518372 scopus 로고
    • Molecular cloning and DNA sequence of the Arabidopsis thaliana alcohol dehydrogenase gene
    • Chang C., Meyerrowitz E.M. Molecular cloning and DNA sequence of the Arabidopsis thaliana alcohol dehydrogenase gene. Proc. Natl. Acad. Sci., USA 1986, 83:1408-1412.
    • (1986) Proc. Natl. Acad. Sci., USA , vol.83 , pp. 1408-1412
    • Chang, C.1    Meyerrowitz, E.M.2
  • 31
    • 34447307897 scopus 로고    scopus 로고
    • A phylogenetic study of the phosphoenolpyruvate carboxylase multigene family in Poaceae: understanding the molecular changes linked to C4 photosynthesis evolution
    • Christin P.A., Salamin N., Savolainen V., Besnard G. A phylogenetic study of the phosphoenolpyruvate carboxylase multigene family in Poaceae: understanding the molecular changes linked to C4 photosynthesis evolution. Kew Bull. 2007, 62:455-462.
    • (2007) Kew Bull. , vol.62 , pp. 455-462
    • Christin, P.A.1    Salamin, N.2    Savolainen, V.3    Besnard, G.4
  • 33
    • 77953482271 scopus 로고    scopus 로고
    • When North and South don't mix: genetic connectivity of a recently endangered oceanic cycad, Cycas micronesica, in Guam using EST-microsatellites
    • Cibrián-Jaramillo A., Daly A.C., Brenner E., DeSalle R., Marler T.E. When North and South don't mix: genetic connectivity of a recently endangered oceanic cycad, Cycas micronesica, in Guam using EST-microsatellites. Mol. Ecol. 2010, 19:2364-2379.
    • (2010) Mol. Ecol. , vol.19 , pp. 2364-2379
    • Cibrián-Jaramillo, A.1    Daly, A.C.2    Brenner, E.3    DeSalle, R.4    Marler, T.E.5
  • 35
    • 76849085431 scopus 로고    scopus 로고
    • Nuclear glutamine synthetase evolution in Nicotiana: phylogenetics and the origins of allotetraploid and homoploid (diploid) hybrids
    • Clarkson J.J., Kelly L.J., Leitch A.R., Knapp S., Chase M.W. Nuclear glutamine synthetase evolution in Nicotiana: phylogenetics and the origins of allotetraploid and homoploid (diploid) hybrids. Mol. Phylogenet. Evol. 2010, 55:99-112.
    • (2010) Mol. Phylogenet. Evol. , vol.55 , pp. 99-112
    • Clarkson, J.J.1    Kelly, L.J.2    Leitch, A.R.3    Knapp, S.4    Chase, M.W.5
  • 36
    • 84873833829 scopus 로고    scopus 로고
    • Localized cell divisions sculpt petal spur development in Aquilegia without contribution from the KNOX genes. Int. J. Plant Sci. 173, in press.
    • Collani, S., Puzey, J., Zimmer, E.A., Barcaccia, G., Kramer, E.M., 2012. Localized cell divisions sculpt petal spur development in Aquilegia without contribution from the KNOX genes. Int. J. Plant Sci. 173, in press.
    • (2012)
    • Collani, S.1    Puzey, J.2    Zimmer, E.A.3    Barcaccia, G.4    Kramer, E.M.5
  • 37
    • 38949179118 scopus 로고    scopus 로고
    • A dated phylogeny of the palm tribe Chamaedoreeae supports Eocene dispersal between Africa, North and South America
    • Cuenca A., Asmussen-Lange C.B., Borchsenius F. A dated phylogeny of the palm tribe Chamaedoreeae supports Eocene dispersal between Africa, North and South America. Mol. Phylogenet. Evol. 2008, 46:760-775.
    • (2008) Mol. Phylogenet. Evol. , vol.46 , pp. 760-775
    • Cuenca, A.1    Asmussen-Lange, C.B.2    Borchsenius, F.3
  • 38
    • 67650915750 scopus 로고    scopus 로고
    • Shedding light on an extremophile lifestyle through transcriptomics
    • Dassanayake M., Haas J.S., Bohnert H.J., Cheeseman J.M. Shedding light on an extremophile lifestyle through transcriptomics. New Phytol. 2009, 183:755-764.
    • (2009) New Phytol. , vol.183 , pp. 755-764
    • Dassanayake, M.1    Haas, J.S.2    Bohnert, H.J.3    Cheeseman, J.M.4
  • 39
    • 84873839237 scopus 로고    scopus 로고
    • Evolution of RNA Polymerase II Introns: Ancient Polymorphism and Paraphyly in the Genus Rhododendron. Ph.D. Dissertation, University of Washington, Seattle.
    • Denton, A.L., 1997. Evolution of RNA Polymerase II Introns: Ancient Polymorphism and Paraphyly in the Genus Rhododendron. Ph.D. Dissertation, University of Washington, Seattle.
    • (1997)
    • Denton, A.L.1
  • 40
    • 0031950476 scopus 로고    scopus 로고
    • Usefulness of RNA polymerase II coding sequences for estimation of green plant phylogeny
    • Denton A.L., McConaughy B.L., Hall B.D. Usefulness of RNA polymerase II coding sequences for estimation of green plant phylogeny. Mol. Biol. Evol. 1998, 15:1082-1085.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1082-1085
    • Denton, A.L.1    McConaughy, B.L.2    Hall, B.D.3
  • 41
    • 79551687108 scopus 로고    scopus 로고
    • De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
    • Der J., Barker M., Wickett N., dePamphilis C., Wolf P. De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum. BMC Genomics 2011, 12:99.
    • (2011) BMC Genomics , vol.12 , pp. 99
    • Der, J.1    Barker, M.2    Wickett, N.3    dePamphilis, C.4    Wolf, P.5
  • 42
    • 0034759293 scopus 로고    scopus 로고
    • Synergistic de-repression of gibberelin signaling by removing RGA and GAI function in Arabidopsis thaliana
    • Dill A., Sun T.-P. Synergistic de-repression of gibberelin signaling by removing RGA and GAI function in Arabidopsis thaliana. Genetics 2001, 159:777-785.
    • (2001) Genetics , vol.159 , pp. 777-785
    • Dill, A.1    Sun, T.-P.2
  • 43
    • 0025732378 scopus 로고
    • Evolution of higher plant glutamine synthetase genes: tissue specificity as a criterion for predicting orthology
    • Doyle J.J. Evolution of higher plant glutamine synthetase genes: tissue specificity as a criterion for predicting orthology. Mol. Biol. Evol. 1991, 8:366-377.
    • (1991) Mol. Biol. Evol. , vol.8 , pp. 366-377
    • Doyle, J.J.1
  • 44
    • 0041508533 scopus 로고    scopus 로고
    • Chloroplast-expressed glutamine synthetase in Glycine and related Leguminosae: phylogeny, gene duplication, and ancient polyploidy
    • Doyle J.J., Doyle J.L., Harbison C. Chloroplast-expressed glutamine synthetase in Glycine and related Leguminosae: phylogeny, gene duplication, and ancient polyploidy. Syst. Bot. 2003, 28:567-577.
    • (2003) Syst. Bot. , vol.28 , pp. 567-577
    • Doyle, J.J.1    Doyle, J.L.2    Harbison, C.3
  • 45
    • 77950191132 scopus 로고    scopus 로고
    • Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels
    • Duarte J.M., Wall P.K., Edger P.P., Landherr L.L., Ma H., Pires J.C., Leebens-Mack J., dePamphilis C.W. Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. BMC Evol. Biol. 2010, 10:61.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 61
    • Duarte, J.M.1    Wall, P.K.2    Edger, P.P.3    Landherr, L.L.4    Ma, H.5    Pires, J.C.6    Leebens-Mack, J.7    dePamphilis, C.W.8
  • 46
    • 79955845635 scopus 로고    scopus 로고
    • Evolutionary biogeography of Manihot (Euphorbiaceae), a rapidly radiating Neotropical genus restricted to dry environments
    • Duputie A., Salick J., McKey D. Evolutionary biogeography of Manihot (Euphorbiaceae), a rapidly radiating Neotropical genus restricted to dry environments. J. Biogeogr. 2011, 38:1033-1043.
    • (2011) J. Biogeogr. , vol.38 , pp. 1033-1043
    • Duputie, A.1    Salick, J.2    McKey, D.3
  • 47
    • 84858611328 scopus 로고    scopus 로고
    • Applications of next-generation sequencing in plant biology
    • Egan A.N., Schlueter J., Spooner D.M. Applications of next-generation sequencing in plant biology. Am. J. Bot. 2012, 99:175-185.
    • (2012) Am. J. Bot. , vol.99 , pp. 175-185
    • Egan, A.N.1    Schlueter, J.2    Spooner, D.M.3
  • 48
    • 0033176347 scopus 로고    scopus 로고
    • Chloroplast expressed glutamine synthetase (ncpGS): potential utility for phylogenetic studies with an example from Oxalis (Oxalidaceae)
    • Emshwiller E., Doyle J.J. Chloroplast expressed glutamine synthetase (ncpGS): potential utility for phylogenetic studies with an example from Oxalis (Oxalidaceae). Mol. Phylogenet. Evol. 1999, 12:310-319.
    • (1999) Mol. Phylogenet. Evol. , vol.12 , pp. 310-319
    • Emshwiller, E.1    Doyle, J.J.2
  • 49
    • 0036743062 scopus 로고    scopus 로고
    • The origin of the apple subfamily (Maloideae; Rosaceae) is clarified by DNA sequence data from duplicated GBSSI genes
    • Evans R.C., Campbell C.S. The origin of the apple subfamily (Maloideae; Rosaceae) is clarified by DNA sequence data from duplicated GBSSI genes. Am. J. Bot. 2002, 89:1478-1484.
    • (2002) Am. J. Bot. , vol.89 , pp. 1478-1484
    • Evans, R.C.1    Campbell, C.S.2
  • 50
    • 0034514038 scopus 로고    scopus 로고
    • The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility
    • Evans R.C., Alice L.A., Campbell C.S., Kellogg E.A., Dickinson T.A. The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility. Mol. Phylogenet. Evol. 2000, 17:388-400.
    • (2000) Mol. Phylogenet. Evol. , vol.17 , pp. 388-400
    • Evans, R.C.1    Alice, L.A.2    Campbell, C.S.3    Kellogg, E.A.4    Dickinson, T.A.5
  • 51
    • 84859548731 scopus 로고    scopus 로고
    • Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales
    • Faircloth B.C., McCormack J.E., Crawford N.G., Harvey M.G., Brumfield R.T., Glenn T.C. Ultraconserved elements anchor thousands of genetic markers for target enrichment spanning multiple evolutionary timescales. Syst. Biol. 2012, 61. 10.1093/sysbio/sys004.
    • (2012) Syst. Biol. , vol.61
    • Faircloth, B.C.1    McCormack, J.E.2    Crawford, N.G.3    Harvey, M.G.4    Brumfield, R.T.5    Glenn, T.C.6
  • 52
    • 34447302579 scopus 로고    scopus 로고
    • Tribal relationships within Onagraceae inferred from PgiC sequences
    • Ford V.S., Gottlieb L.D. Tribal relationships within Onagraceae inferred from PgiC sequences. Syst. Bot. 2007, 32:348-356.
    • (2007) Syst. Bot. , vol.32 , pp. 348-356
    • Ford, V.S.1    Gottlieb, L.D.2
  • 53
    • 0028854829 scopus 로고
    • The same duplication accounts for the Pgi C genes in Clarkia xantiana and C. lewisii (Onagraceae)
    • Ford V.S., Thomas B.R., Gottlieb L.D. The same duplication accounts for the Pgi C genes in Clarkia xantiana and C. lewisii (Onagraceae). Syst. Bot. 1995, 20:147-160.
    • (1995) Syst. Bot. , vol.20 , pp. 147-160
    • Ford, V.S.1    Thomas, B.R.2    Gottlieb, L.D.3
  • 54
    • 33644781583 scopus 로고    scopus 로고
    • Species divergence and relationships in Stephanomeria (Compositae): PgiC phylogeny compared to prior biosystematic studies
    • Ford V.S., Lee J., Baldwin B.G., Gottlieb L.D. Species divergence and relationships in Stephanomeria (Compositae): PgiC phylogeny compared to prior biosystematic studies. Am. J. Bot. 2006, 93:480-490.
    • (2006) Am. J. Bot. , vol.93 , pp. 480-490
    • Ford, V.S.1    Lee, J.2    Baldwin, B.G.3    Gottlieb, L.D.4
  • 55
    • 79955769112 scopus 로고    scopus 로고
    • Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing
    • Franssen S.U., Shrestha R., Brautigam A., Bornberg-Bauer, Weber A. Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing. BMC Genomics 2011, 12:227.
    • (2011) BMC Genomics , vol.12 , pp. 227
    • Franssen, S.U.1    Shrestha, R.2    Brautigam, A.3    Bornberg-Bauer4    Weber, A.5
  • 56
    • 0034042674 scopus 로고    scopus 로고
    • The mostly male theory of flower evolutionary origins: from genes to fossils
    • Frohlich M.W., Parker D.S. The mostly male theory of flower evolutionary origins: from genes to fossils. Syst. Bot. 2000, 25:155-170.
    • (2000) Syst. Bot. , vol.25 , pp. 155-170
    • Frohlich, M.W.1    Parker, D.S.2
  • 58
    • 0026099131 scopus 로고
    • Molecular evolution of alcohol dehydrogenase 1 in members of the grass family
    • Gaut B.S., Clegg M.T. Molecular evolution of alcohol dehydrogenase 1 in members of the grass family. Proc. Natl. Acad. Sci., USA 1991, 88:2060-2064.
    • (1991) Proc. Natl. Acad. Sci., USA , vol.88 , pp. 2060-2064
    • Gaut, B.S.1    Clegg, M.T.2
  • 59
    • 0027163107 scopus 로고
    • Molecular evolution of the Adh1 locus in the genus Zea
    • Gaut B.S., Clegg M.T. Molecular evolution of the Adh1 locus in the genus Zea. Proc. Natl. Acad. Sci., USA 1993, 90:5095-5099.
    • (1993) Proc. Natl. Acad. Sci., USA , vol.90 , pp. 5095-5099
    • Gaut, B.S.1    Clegg, M.T.2
  • 60
    • 0029812835 scopus 로고    scopus 로고
    • Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL
    • Gaut B., Morton B., McCaig B.C., Clegg M.T. Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc. Natl. Acad. Sci., USA 1996, 93:10274-10279.
    • (1996) Proc. Natl. Acad. Sci., USA , vol.93 , pp. 10274-10279
    • Gaut, B.1    Morton, B.2    McCaig, B.C.3    Clegg, M.T.4
  • 61
    • 0034898214 scopus 로고    scopus 로고
    • New partial sequences of phosphoenolpyruvate carboxylase as molecular phylogenetic markers
    • Gehrig H., Heute V., Kluge M. New partial sequences of phosphoenolpyruvate carboxylase as molecular phylogenetic markers. Mol. Phylogenet. Evol. 2001, 20:262-274.
    • (2001) Mol. Phylogenet. Evol. , vol.20 , pp. 262-274
    • Gehrig, H.1    Heute, V.2    Kluge, M.3
  • 62
    • 80051688000 scopus 로고    scopus 로고
    • Field guide to next-generation DNA sequencers
    • Glenn T. Field guide to next-generation DNA sequencers. Mol. Ecol. Res. 2011, 11:759-769.
    • (2011) Mol. Ecol. Res. , vol.11 , pp. 759-769
    • Glenn, T.1
  • 63
    • 23944447543 scopus 로고    scopus 로고
    • The molecular systematics of Rhododendron (Ericaceae): a phylogeny based upon rpb2 gene sequences
    • Goetsch L., Eckert A.J., Hall B.D. The molecular systematics of Rhododendron (Ericaceae): a phylogeny based upon rpb2 gene sequences. Syst. Bot. 2005, 30:616-626.
    • (2005) Syst. Bot. , vol.30 , pp. 616-626
    • Goetsch, L.1    Eckert, A.J.2    Hall, B.D.3
  • 65
    • 0031053184 scopus 로고    scopus 로고
    • A recently silenced, duplicate PgiC locus in Clarkia
    • Gottlieb L.D., Ford V.S. A recently silenced, duplicate PgiC locus in Clarkia. Mol. Biol. Evol. 1996, 14:125-132.
    • (1996) Mol. Biol. Evol. , vol.14 , pp. 125-132
    • Gottlieb, L.D.1    Ford, V.S.2
  • 66
    • 0029759308 scopus 로고    scopus 로고
    • Phylogenetic relationships among the sections of Clarkia (Onagraceae) inferred from the nucleotide sequences of PgiC
    • Gottlieb L.D., Ford V.S. Phylogenetic relationships among the sections of Clarkia (Onagraceae) inferred from the nucleotide sequences of PgiC. Syst. Bot. 1996, 20:45-62.
    • (1996) Syst. Bot. , vol.20 , pp. 45-62
    • Gottlieb, L.D.1    Ford, V.S.2
  • 67
    • 79953122203 scopus 로고    scopus 로고
    • A next-generation sequencing method for overcoming the multiple gene copy problem in polyploidy phylogenetics, applied to Poa grasses
    • Griffin P., Robin C., Hoffmann A. A next-generation sequencing method for overcoming the multiple gene copy problem in polyploidy phylogenetics, applied to Poa grasses. BMC Biol. 2011, 9:19.
    • (2011) BMC Biol. , vol.9 , pp. 19
    • Griffin, P.1    Robin, C.2    Hoffmann, A.3
  • 68
    • 84858591099 scopus 로고    scopus 로고
    • Targeted sequence capture as a powerful tool for evolutionary analysis
    • Grover C.E., Salmon A., Wendel J.F. Targeted sequence capture as a powerful tool for evolutionary analysis. Am. J. Bot. 2012, 99:312-319.
    • (2012) Am. J. Bot. , vol.99 , pp. 312-319
    • Grover, C.E.1    Salmon, A.2    Wendel, J.F.3
  • 69
    • 7044241272 scopus 로고    scopus 로고
    • The phylogeny of the Cocoeae (Arecaceae) with emphasis on Cocos nucifera
    • Gunn B.F. The phylogeny of the Cocoeae (Arecaceae) with emphasis on Cocos nucifera. Ann. Mo. Bot. Gard. 2004, 91:505-522.
    • (2004) Ann. Mo. Bot. Gard. , vol.91 , pp. 505-522
    • Gunn, B.F.1
  • 70
    • 84858395385 scopus 로고    scopus 로고
    • Convergent evolution of a complex fruit structure in the tribe Brassiceae (Brassicaceae)
    • Hall J.C., Tisdale T., Donohue K., Wheeler A., Al-Yahya M., Kramer E.M. Convergent evolution of a complex fruit structure in the tribe Brassiceae (Brassicaceae). Am. J. Bot. 2011, 98:1989-2003.
    • (2011) Am. J. Bot. , vol.98 , pp. 1989-2003
    • Hall, J.C.1    Tisdale, T.2    Donohue, K.3    Wheeler, A.4    Al-Yahya, M.5    Kramer, E.M.6
  • 71
    • 0000691694 scopus 로고
    • Chloroplast DNA and biosystematics: the effect of intraspecific diversity and plastid transmission
    • Harris S.A., Ingram R. Chloroplast DNA and biosystematics: the effect of intraspecific diversity and plastid transmission. Taxon 1991, 40:393-412.
    • (1991) Taxon , vol.40 , pp. 393-412
    • Harris, S.A.1    Ingram, R.2
  • 73
    • 0037387371 scopus 로고    scopus 로고
    • Why do paralogs persist? Molecular evolution of CYCLOIDEA and related floral symmetry genes in Antirrhineae (Veronicaceae)
    • Hileman L., Baum D. Why do paralogs persist? Molecular evolution of CYCLOIDEA and related floral symmetry genes in Antirrhineae (Veronicaceae). Mol. Biol. Evol. 2003, 20:591-600.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 591-600
    • Hileman, L.1    Baum, D.2
  • 76
    • 67650300018 scopus 로고    scopus 로고
    • Adaptive radiations: from field to genomic studies
    • Hodges S.A., Derieg N.J. Adaptive radiations: from field to genomic studies. Proc. Natl. Acad. Sci., USA 2009, 106:s9947-9954.
    • (2009) Proc. Natl. Acad. Sci., USA , vol.106
    • Hodges, S.A.1    Derieg, N.J.2
  • 78
    • 0040332183 scopus 로고    scopus 로고
    • The utility of nuclear ITS, a LEAFY homolog intron, and chloroplast atpB-rbcL spacer region data in phylogenetic analyses and species delimitation in Isoetes
    • Hoot S.B., Taylor W.C. The utility of nuclear ITS, a LEAFY homolog intron, and chloroplast atpB-rbcL spacer region data in phylogenetic analyses and species delimitation in Isoetes. Am. Fern J. 2001, 91:166-177.
    • (2001) Am. Fern J. , vol.91 , pp. 166-177
    • Hoot, S.B.1    Taylor, W.C.2
  • 79
    • 0036019710 scopus 로고    scopus 로고
    • Phylogenetic utility of a nuclear intron from nitrate reductase for the study of closely related plant species
    • Howarth D.G., Baum D.A. Phylogenetic utility of a nuclear intron from nitrate reductase for the study of closely related plant species. Mol. Phylogenet. Evol. 2002, 23:525-528.
    • (2002) Mol. Phylogenet. Evol. , vol.23 , pp. 525-528
    • Howarth, D.G.1    Baum, D.A.2
  • 80
    • 33646594138 scopus 로고    scopus 로고
    • From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction
    • Hughes C.E., Eastwood R.J., Donovan Bailey C. From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction. Philos. Trans. Roy. Soc. B 2006, 361:211-225.
    • (2006) Philos. Trans. Roy. Soc. B , vol.361 , pp. 211-225
    • Hughes, C.E.1    Eastwood, R.J.2    Donovan Bailey, C.3
  • 81
    • 77954638376 scopus 로고    scopus 로고
    • Chalcone synthase variation and phylogenetic relationships in Dactylorhiza (Orchidaceae)
    • Inda L.A., Pimentel M., Chase M.W. Chalcone synthase variation and phylogenetic relationships in Dactylorhiza (Orchidaceae). Bot. J. Linn. Soc. 2010, 163:155-165.
    • (2010) Bot. J. Linn. Soc. , vol.163 , pp. 155-165
    • Inda, L.A.1    Pimentel, M.2    Chase, M.W.3
  • 82
    • 35348833458 scopus 로고    scopus 로고
    • Phylogenetic relationships in Rhexia (Melastomataceae): evidence from DNA sequence data and morphology
    • Ionta G.M., Judd W.S., Williams N.H., Whitten W.H. Phylogenetic relationships in Rhexia (Melastomataceae): evidence from DNA sequence data and morphology. Int. J. Plant Sci. 2007, 168:1855-2066.
    • (2007) Int. J. Plant Sci. , vol.168 , pp. 1855-2066
    • Ionta, G.M.1    Judd, W.S.2    Williams, N.H.3    Whitten, W.H.4
  • 83
    • 34848886909 scopus 로고    scopus 로고
    • The French-Italian Public Consortium for Grapevine Genome Characterization, 2007. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449, 463-467.
    • Jaillon, O., et al., 2007. The French-Italian Public Consortium for Grapevine Genome Characterization, 2007. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449, 463-467.
    • (2007)
    • Jaillon, O.1
  • 85
    • 24044431571 scopus 로고    scopus 로고
    • Phylogenetic relationships of Betula species (Betulaceae) based on nuclear ADH and chloroplast matK sequences
    • Järvinen P., Palmé A., Morales L.O., Lännenpää M., Keinänen M., Sopanen T., Lascoux M. Phylogenetic relationships of Betula species (Betulaceae) based on nuclear ADH and chloroplast matK sequences. Am. J. Bot. 2004, 91:1834-1845.
    • (2004) Am. J. Bot. , vol.91 , pp. 1834-1845
    • Järvinen, P.1    Palmé, A.2    Morales, L.O.3    Lännenpää, M.4    Keinänen, M.5    Sopanen, T.6    Lascoux, M.7
  • 86
    • 33845536587 scopus 로고    scopus 로고
    • The rice genome encodes two vacuolar invertases with fructan exohydrolase activity but lacks the related fructan biosynthesis genes of the Pooideae
    • Ji X., Van den Ende W., Schroeven L., Clerens S., Geuten K., Cheng S., Bennett J. The rice genome encodes two vacuolar invertases with fructan exohydrolase activity but lacks the related fructan biosynthesis genes of the Pooideae. New Phytol. 2007, 173:50-62.
    • (2007) New Phytol. , vol.173 , pp. 50-62
    • Ji, X.1    Van den Ende, W.2    Schroeven, L.3    Clerens, S.4    Geuten, K.5    Cheng, S.6    Bennett, J.7
  • 88
    • 0027567325 scopus 로고
    • DNaseI-sensitive and undermethylated rDNA is preferentially expressed in a maize hybrid
    • Jupe E., Zimmer E.A. DNaseI-sensitive and undermethylated rDNA is preferentially expressed in a maize hybrid. Plant Mol. Biol. 1993, 21:805-821.
    • (1993) Plant Mol. Biol. , vol.21 , pp. 805-821
    • Jupe, E.1    Zimmer, E.A.2
  • 89
    • 18244363082 scopus 로고    scopus 로고
    • Phylogeny of PgiC gene in Shorea and its closely related genera (Dipterocarpaceae), the dominant trees in Southeast Asian tropical rain forests
    • Kamiya K., Harada K., Tachida H., Ashton P.S. Phylogeny of PgiC gene in Shorea and its closely related genera (Dipterocarpaceae), the dominant trees in Southeast Asian tropical rain forests. Am. J. Bot. 2005, 92:775-788.
    • (2005) Am. J. Bot. , vol.92 , pp. 775-788
    • Kamiya, K.1    Harada, K.2    Tachida, H.3    Ashton, P.S.4
  • 90
    • 15944381065 scopus 로고    scopus 로고
    • Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication
    • Kim S., Yoo M.-J., Albert V.A., Farris J.S., Soltis P.S., Soltis D.E. Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication. Am. J. Bot. 2004, 91:2102-2118.
    • (2004) Am. J. Bot. , vol.91 , pp. 2102-2118
    • Kim, S.1    Yoo, M.-J.2    Albert, V.A.3    Farris, J.S.4    Soltis, P.S.5    Soltis, D.E.6
  • 91
    • 77953523655 scopus 로고    scopus 로고
    • Speciation pathway of Isoëtes (Isoëtaceae) in East Asia inferred from molecular phylogenetic relationships
    • Kim C., Shin H., Chang Y.-T., Choi H.-K. Speciation pathway of Isoëtes (Isoëtaceae) in East Asia inferred from molecular phylogenetic relationships. Am. J. Bot. 2010, 97:958-969.
    • (2010) Am. J. Bot. , vol.97 , pp. 958-969
    • Kim, C.1    Shin, H.2    Chang, Y.-T.3    Choi, H.-K.4
  • 92
    • 0033804889 scopus 로고    scopus 로고
    • Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis and related genera
    • Koch M.A., Haubold B., Mitchell-Olds T. Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis and related genera. Mol. Biol. Evol. 2000, 17:1483-1498.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1483-1498
    • Koch, M.A.1    Haubold, B.2    Mitchell-Olds, T.3
  • 94
    • 33750633014 scopus 로고    scopus 로고
    • Gene duplication and floral developmental genetics of basal eudicots
    • Kramer E.M., Zimmer E.A. Gene duplication and floral developmental genetics of basal eudicots. Adv. Bot. Res. 2006, 44:352-381.
    • (2006) Adv. Bot. Res. , vol.44 , pp. 352-381
    • Kramer, E.M.1    Zimmer, E.A.2
  • 95
    • 0037270295 scopus 로고    scopus 로고
    • Complex patterns of gene duplication in the APETALA3 and PISTILLATA lineages of the Ranunculaceae
    • Kramer E.M., Di Stilio V.S., Schluter P. Complex patterns of gene duplication in the APETALA3 and PISTILLATA lineages of the Ranunculaceae. Int. J. Plant Sci. 2003, 164:1-11.
    • (2003) Int. J. Plant Sci. , vol.164 , pp. 1-11
    • Kramer, E.M.1    Di Stilio, V.S.2    Schluter, P.3
  • 96
    • 1642305995 scopus 로고    scopus 로고
    • Patterns of gene duplication and functional evolution during the diversification of the AGAMOUS subfamily of MADS-box genes in angiosperms
    • Kramer E.M., Jaramillo M.A., Di Stilio V.S. Patterns of gene duplication and functional evolution during the diversification of the AGAMOUS subfamily of MADS-box genes in angiosperms. Genetics 2004, 166:1011-1023.
    • (2004) Genetics , vol.166 , pp. 1011-1023
    • Kramer, E.M.1    Jaramillo, M.A.2    Di Stilio, V.S.3
  • 97
    • 35348934281 scopus 로고    scopus 로고
    • Molecular phylogeny of Macaranga, Mallotus, and related genera (Euphorbiaceae s.s.): insights from plastid and nuclear DNA sequence data
    • Kulju K.K.M., Sierra S.E.C., Draisma S.G.A., Samuel R., van Welzen P.C. Molecular phylogeny of Macaranga, Mallotus, and related genera (Euphorbiaceae s.s.): insights from plastid and nuclear DNA sequence data. Am. J. Bot. 2007, 94:1726-1743.
    • (2007) Am. J. Bot. , vol.94 , pp. 1726-1743
    • Kulju, K.K.M.1    Sierra, S.E.C.2    Draisma, S.G.A.3    Samuel, R.4    van Welzen, P.C.5
  • 98
    • 84863338264 scopus 로고    scopus 로고
    • Genomics of Compositae weeds: EST libraries, microarrays and evidence of introgression
    • Lai Z., Kane N., Kozik A., Hodgins K., Dlugosch K., Barker M., Matvienko M., et al. Genomics of Compositae weeds: EST libraries, microarrays and evidence of introgression. Am. J. Bot. 2012, 99:209-218.
    • (2012) Am. J. Bot. , vol.99 , pp. 209-218
    • Lai, Z.1    Kane, N.2    Kozik, A.3    Hodgins, K.4    Dlugosch, K.5    Barker, M.6    Matvienko, M.7
  • 99
    • 52949127350 scopus 로고    scopus 로고
    • Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species
    • Li M., Wunder J., Bissoli G., Scarponi E., Gazzani S., Barbaro E., Saedler H., Varotto C. Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species. Cladistics 2008, 24:727-745.
    • (2008) Cladistics , vol.24 , pp. 727-745
    • Li, M.1    Wunder, J.2    Bissoli, G.3    Scarponi, E.4    Gazzani, S.5    Barbaro, E.6    Saedler, H.7    Varotto, C.8
  • 100
    • 33646503886 scopus 로고    scopus 로고
    • Low-copy nuclear DNA, phylogeny and the evolution of dichogamy in the betel nut palms and their relatives (Arecinae; Arecaceae)
    • Loo A.H.B., Dransfield J., Chase M.W., Baker W.J. Low-copy nuclear DNA, phylogeny and the evolution of dichogamy in the betel nut palms and their relatives (Arecinae; Arecaceae). Mol. Phylogenet. Evol. 2006, 39:598-618.
    • (2006) Mol. Phylogenet. Evol. , vol.39 , pp. 598-618
    • Loo, A.H.B.1    Dransfield, J.2    Chase, M.W.3    Baker, W.J.4
  • 101
    • 81855190629 scopus 로고    scopus 로고
    • Phylogenetic utility of the nuclear genes AGAMOUS 1 and PHYTOCHROME B in palms (Arecaceae): an example within Bactridinae
    • Ludena B., Chabrillange N., Aberlenc-Bertossi F., Adam H., Tregear J.W., Pintaud J.-C. Phylogenetic utility of the nuclear genes AGAMOUS 1 and PHYTOCHROME B in palms (Arecaceae): an example within Bactridinae. Ann. Bot. 2011, 10.1093/aob/mcr191.
    • (2011) Ann. Bot.
    • Ludena, B.1    Chabrillange, N.2    Aberlenc-Bertossi, F.3    Adam, H.4    Tregear, J.W.5    Pintaud, J.-C.6
  • 102
    • 34447289990 scopus 로고    scopus 로고
    • Duplication and paralog sorting of RPB2 and RPB1 genes in core eudicots
    • Luo J., Yoshikawa N., Hodson M.C., Hall B.D. Duplication and paralog sorting of RPB2 and RPB1 genes in core eudicots. Mol. Phylogenet. Evol. 2007, 44:850-862.
    • (2007) Mol. Phylogenet. Evol. , vol.44 , pp. 850-862
    • Luo, J.1    Yoshikawa, N.2    Hodson, M.C.3    Hall, B.D.4
  • 103
    • 77957132217 scopus 로고    scopus 로고
    • Evolutionary breakdown of pollination specialization in a Caribbean plant radiation
    • Marten-Rodriguez S., Fenster C.B., Agnarsson I., Skog L.E., Zimmer E.A. Evolutionary breakdown of pollination specialization in a Caribbean plant radiation. New Phytol. 2010, 188:403-417.
    • (2010) New Phytol. , vol.188 , pp. 403-417
    • Marten-Rodriguez, S.1    Fenster, C.B.2    Agnarsson, I.3    Skog, L.E.4    Zimmer, E.A.5
  • 104
    • 20744449815 scopus 로고    scopus 로고
    • Reconstruction of Solanaceae phylogeny using the nuclear gene SAMT
    • Martins T., Barkman T. Reconstruction of Solanaceae phylogeny using the nuclear gene SAMT. Syst. Bot. 2005, 30:435-447.
    • (2005) Syst. Bot. , vol.30 , pp. 435-447
    • Martins, T.1    Barkman, T.2
  • 105
    • 0035667916 scopus 로고    scopus 로고
    • Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on grMason-Gamer, R.J., 2001. Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on granule-bound starch synthase gene sequences
    • Mason-Gamer R.J. Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on grMason-Gamer, R.J., 2001. Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on granule-bound starch synthase gene sequences. Syst. Bot. 2001, 26:757-768.
    • (2001) Syst. Bot. , vol.26 , pp. 757-768
    • Mason-Gamer, R.J.1
  • 106
    • 19544381032 scopus 로고    scopus 로고
    • The β-amylase genes of grasses and a phylogenetic analysis of the Triticeae (Poaceae)
    • Mason-Gamer R.J. The β-amylase genes of grasses and a phylogenetic analysis of the Triticeae (Poaceae). Am. J. Bot. 2005, 92:1045-1058.
    • (2005) Am. J. Bot. , vol.92 , pp. 1045-1058
    • Mason-Gamer, R.J.1
  • 107
    • 42749087776 scopus 로고    scopus 로고
    • Allohexaploidy, introgression, and the complex phylogenetic history of Elymus repens (Poaceae)
    • Mason-Gamer R.J. Allohexaploidy, introgression, and the complex phylogenetic history of Elymus repens (Poaceae). Mol. Phylogenet. Evol. 2008, 47:598-611.
    • (2008) Mol. Phylogenet. Evol. , vol.47 , pp. 598-611
    • Mason-Gamer, R.J.1
  • 108
    • 0031796608 scopus 로고    scopus 로고
    • Granule-bound starch synthase: structure, function, and phylogenetic utility
    • Mason-Gamer R.J., Weil C.F., Kellogg E.A. Granule-bound starch synthase: structure, function, and phylogenetic utility. Mol. Biol. Evol. 1998, 15:1658-1673.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1658-1673
    • Mason-Gamer, R.J.1    Weil, C.F.2    Kellogg, E.A.3
  • 109
    • 77956212117 scopus 로고    scopus 로고
    • Reticulate evolutionary history of a complex group of grasses: phylogeny of Elymus StStHH allotetraploids based on three nuclear genes
    • Mason-Gamer R.J., Naum M., Burns M.M. Reticulate evolutionary history of a complex group of grasses: phylogeny of Elymus StStHH allotetraploids based on three nuclear genes. PLoS One 2010, 5:e10989.
    • (2010) PLoS One , vol.5
    • Mason-Gamer, R.J.1    Naum, M.2    Burns, M.M.3
  • 110
    • 33749870468 scopus 로고    scopus 로고
    • Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments
    • Mathews S. Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments. Mol. Ecol. 2006, 15:3483-3503.
    • (2006) Mol. Ecol. , vol.15 , pp. 3483-3503
    • Mathews, S.1
  • 111
    • 60249093425 scopus 로고    scopus 로고
    • Phylogenetic relationships among seed plants: persistent questions and the limits of molecular data
    • Mathews S. Phylogenetic relationships among seed plants: persistent questions and the limits of molecular data. Am. J. Bot. 2009, 96:228-236.
    • (2009) Am. J. Bot. , vol.96 , pp. 228-236
    • Mathews, S.1
  • 112
    • 77950355737 scopus 로고    scopus 로고
    • Evolutionary studies illuminate the structural-functional model of plant phytochromes
    • Mathews S. Evolutionary studies illuminate the structural-functional model of plant phytochromes. Plant Cell 2010, 22:4-16.
    • (2010) Plant Cell , vol.22 , pp. 4-16
    • Mathews, S.1
  • 113
    • 0033615479 scopus 로고    scopus 로고
    • The root of angiosperm phylogeny inferred from duplicate phytochrome genes
    • Mathews S., Donoghue M.J. The root of angiosperm phylogeny inferred from duplicate phytochrome genes. Science 1999, 286:947-950.
    • (1999) Science , vol.286 , pp. 947-950
    • Mathews, S.1    Donoghue, M.J.2
  • 116
    • 76749130170 scopus 로고    scopus 로고
    • A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants
    • Mathews S., Clements M.D., Beilstein M.A. A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants. Philos. Trans. Roy. Soc. B 2010, 365:383-395.
    • (2010) Philos. Trans. Roy. Soc. B , vol.365 , pp. 383-395
    • Mathews, S.1    Clements, M.D.2    Beilstein, M.A.3
  • 117
    • 34548028023 scopus 로고    scopus 로고
    • Inheritance of chloroplast DNA is not strictly maternal in Silene vulgaris (Caryophyllaceae): evidence from experimental crosses and natural populations
    • McCauley D.E., Sunby A.K., Bailey M.F., Welch M.E. Inheritance of chloroplast DNA is not strictly maternal in Silene vulgaris (Caryophyllaceae): evidence from experimental crosses and natural populations. Am. J. Bot. 2007, 94:1333-1337.
    • (2007) Am. J. Bot. , vol.94 , pp. 1333-1337
    • McCauley, D.E.1    Sunby, A.K.2    Bailey, M.F.3    Welch, M.E.4
  • 118
    • 84863337847 scopus 로고    scopus 로고
    • Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asperagaceae)
    • McKain M.R., Wickett N., Zhang Y., Saravanaraj A., McCombie W.R., Chase M.W., Pires J.C., dePamphilis C.W., Leebens-Mack J. Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asperagaceae). Am. J. Bot. 2012, 99:397-406.
    • (2012) Am. J. Bot. , vol.99 , pp. 397-406
    • McKain, M.R.1    Wickett, N.2    Zhang, Y.3    Saravanaraj, A.4    McCombie, W.R.5    Chase, M.W.6    Pires, J.C.7    dePamphilis, C.W.8    Leebens-Mack, J.9
  • 119
    • 1542290449 scopus 로고    scopus 로고
    • Phylogenetic utility and evidence for multiple copies of granule-bound starch synthase I (GBSSI) in the Araliaceae
    • Mitchell A., Wen J. Phylogenetic utility and evidence for multiple copies of granule-bound starch synthase I (GBSSI) in the Araliaceae. Taxon 2004, 53:29-41.
    • (2004) Taxon , vol.53 , pp. 29-41
    • Mitchell, A.1    Wen, J.2
  • 120
    • 0001616729 scopus 로고    scopus 로고
    • Integrating molecular phylogenies and developmental genetics: a Gesneriaceae case study
    • Taylor and Francis, London, P. Hollingsworth, R. Bateman, R. Gornall (Eds.)
    • Moeller M., Clokie M., Cubas P., Cronk Q.C.B. Integrating molecular phylogenies and developmental genetics: a Gesneriaceae case study. Molecular Systematics and Plant Evolution 1999, 375-402. Taylor and Francis, London. P. Hollingsworth, R. Bateman, R. Gornall (Eds.).
    • (1999) Molecular Systematics and Plant Evolution , pp. 375-402
    • Moeller, M.1    Clokie, M.2    Cubas, P.3    Cronk, Q.C.B.4
  • 121
    • 37549054628 scopus 로고    scopus 로고
    • Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
    • Moore M.J., Bell C.D., Soltis P.S., Soltis D.E. Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc. Natl. Acad. Sci., USA 2007, 104:19363-19368.
    • (2007) Proc. Natl. Acad. Sci., USA , vol.104 , pp. 19363-19368
    • Moore, M.J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 122
    • 3042523730 scopus 로고    scopus 로고
    • The continuing search: low-copy nuclear sequences for lower-level plant molecular phylogenetic studies
    • Mort M., Crawford D. The continuing search: low-copy nuclear sequences for lower-level plant molecular phylogenetic studies. Taxon 2004, 53:257-261.
    • (2004) Taxon , vol.53 , pp. 257-261
    • Mort, M.1    Crawford, D.2
  • 123
    • 0029859577 scopus 로고    scopus 로고
    • Evolution of alcohol dehydrogenase genes in the palm and grass families
    • Morton B.R., Gaut B.S., Clegg M.T. Evolution of alcohol dehydrogenase genes in the palm and grass families. Proc. Natl. Acad. Sci., USA 1996, 93:11735-11739.
    • (1996) Proc. Natl. Acad. Sci., USA , vol.93 , pp. 11735-11739
    • Morton, B.R.1    Gaut, B.S.2    Clegg, M.T.3
  • 124
    • 70450265540 scopus 로고    scopus 로고
    • A comprehensive classification and evolutionary analysis of plant homeobox genes
    • Mukherjee K., Brocchieri L., Burglin T. A comprehensive classification and evolutionary analysis of plant homeobox genes. Mol. Biol. Evol. 2009, 26:2775-2794.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2775-2794
    • Mukherjee, K.1    Brocchieri, L.2    Burglin, T.3
  • 125
    • 0036372707 scopus 로고    scopus 로고
    • Evolutionary aspects of MADS-box genes in the eusporangiate fern Ophioglossum
    • Munster T., Faigl W., Saedler H., Theissen G. Evolutionary aspects of MADS-box genes in the eusporangiate fern Ophioglossum. Plant Biol. 2002, 4:474-483.
    • (2002) Plant Biol. , vol.4 , pp. 474-483
    • Munster, T.1    Faigl, W.2    Saedler, H.3    Theissen, G.4
  • 126
    • 50549092309 scopus 로고    scopus 로고
    • Phylogenetic and biogeographic complexity of Magnoliaceae in the Northern Hemisphere inferred from three nuclear data sets
    • Nie Z.-L., Wen J., Azuma H., Qiu Y.-L., Sun H., Meng Y., Sun W.-B., Zimmer E.A. Phylogenetic and biogeographic complexity of Magnoliaceae in the Northern Hemisphere inferred from three nuclear data sets. Mol. Phylogenet. Evol. 2008, 48:1027-1040.
    • (2008) Mol. Phylogenet. Evol. , vol.48 , pp. 1027-1040
    • Nie, Z.-L.1    Wen, J.2    Azuma, H.3    Qiu, Y.-L.4    Sun, H.5    Meng, Y.6    Sun, W.-B.7    Zimmer, E.A.8
  • 127
    • 84866173286 scopus 로고    scopus 로고
    • Phylogenetic analysis of Toxicodendron (Anacardiaceae) and its biogeographic implications on the evolution of north temperate and tropical intercontinental disjunctions Yamaguchi, S., 2003. Gibberellin biosynthesis and response during Arabidopsis seed germination
    • Nie Z., Sun H., Meng Y., Wen J. Phylogenetic analysis of Toxicodendron (Anacardiaceae) and its biogeographic implications on the evolution of north temperate and tropical intercontinental disjunctions Yamaguchi, S., 2003. Gibberellin biosynthesis and response during Arabidopsis seed germination. Plant Cell 2009, 15:1591-1604.
    • (2009) Plant Cell , vol.15 , pp. 1591-1604
    • Nie, Z.1    Sun, H.2    Meng, Y.3    Wen, J.4
  • 128
    • 77955992829 scopus 로고    scopus 로고
    • Molecular phylogeny and biogeographic diversification of Parthenocissus (Vitaceae) disjunct between Asia and North America
    • Nie Z.-L., Sun H., Chen Z.-D., Meng Y., Manchester S., Wen J. Molecular phylogeny and biogeographic diversification of Parthenocissus (Vitaceae) disjunct between Asia and North America. Am. J. Bot. 2010, 97:1342-1353.
    • (2010) Am. J. Bot. , vol.97 , pp. 1342-1353
    • Nie, Z.-L.1    Sun, H.2    Chen, Z.-D.3    Meng, Y.4    Manchester, S.5    Wen, J.6
  • 130
    • 12244291973 scopus 로고    scopus 로고
    • Molecular phylogenetic systematic and biogeography of tribe Neillieae (Rosaceae) using DNA sequences of cpDNA, rDNA, and LEAFY
    • Oh S.H., Potter D. Molecular phylogenetic systematic and biogeography of tribe Neillieae (Rosaceae) using DNA sequences of cpDNA, rDNA, and LEAFY. Am. J. Bot. 2005, 92:179-192.
    • (2005) Am. J. Bot. , vol.92 , pp. 179-192
    • Oh, S.H.1    Potter, D.2
  • 132
    • 0030708651 scopus 로고    scopus 로고
    • The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses
    • Peng J., Carol P., Richard D.E., King K.E., Cowling R.J., Murphy G.P., Harberd N.P. The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses. Genes Dev. 1997, 11:3194-3205.
    • (1997) Genes Dev. , vol.11 , pp. 3194-3205
    • Peng, J.1    Carol, P.2    Richard, D.E.3    King, K.E.4    Cowling, R.J.5    Murphy, G.P.6    Harberd, N.P.7
  • 134
    • 0000881217 scopus 로고    scopus 로고
    • Granule-bound starch synthase (GBSSI) gene phylogeny of wild tomatoes (Solanum L. section Lycopersicon [Mill.] Wettst. subsection Lycopersicon)
    • Peralta I.E., Spooner D.M. Granule-bound starch synthase (GBSSI) gene phylogeny of wild tomatoes (Solanum L. section Lycopersicon [Mill.] Wettst. subsection Lycopersicon). Am. J. Bot. 2001, 88:1888-1902.
    • (2001) Am. J. Bot. , vol.88 , pp. 1888-1902
    • Peralta, I.E.1    Spooner, D.M.2
  • 135
    • 79960122986 scopus 로고    scopus 로고
    • When is enough, enough in phylogenetics? A case in point from Hordeum (Poaceae)
    • Petersen G., Aagesen L., Seberg O., Larsen I.H. When is enough, enough in phylogenetics? A case in point from Hordeum (Poaceae). Cladistics 2011, 27:1-19.
    • (2011) Cladistics , vol.27 , pp. 1-19
    • Petersen, G.1    Aagesen, L.2    Seberg, O.3    Larsen, I.H.4
  • 136
    • 65549104280 scopus 로고    scopus 로고
    • Reticulate evolution on a mosaic of soils: diversification of the New Caledonian endemic genus Codia (Cunoniaceae)
    • Pillon Y., Munzinger J., Amir H., Hopkins H.C.F., Chase M.W. Reticulate evolution on a mosaic of soils: diversification of the New Caledonian endemic genus Codia (Cunoniaceae). Mol. Ecol. 2009, 18:2263-2275.
    • (2009) Mol. Ecol. , vol.18 , pp. 2263-2275
    • Pillon, Y.1    Munzinger, J.2    Amir, H.3    Hopkins, H.C.F.4    Chase, M.W.5
  • 137
    • 79952299175 scopus 로고    scopus 로고
    • Gradual disintegration of the floral symmetry gene network is implicated in the evolution of a wind-pollinated syndrome
    • Preston J., Martinez C., Hileman L. Gradual disintegration of the floral symmetry gene network is implicated in the evolution of a wind-pollinated syndrome. Proc. Natl. Acad. Sci., USA 2011, 108:2343-2348.
    • (2011) Proc. Natl. Acad. Sci., USA , vol.108 , pp. 2343-2348
    • Preston, J.1    Martinez, C.2    Hileman, L.3
  • 138
    • 0033118897 scopus 로고    scopus 로고
    • The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the scarecrow-like genes
    • Pysh L.D., Wysocka-Diller J.W., Camilleri C., Bouchez D., Benfey P.N. The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the scarecrow-like genes. Plant J. 1999, 18:111-119.
    • (1999) Plant J. , vol.18 , pp. 111-119
    • Pysh, L.D.1    Wysocka-Diller, J.W.2    Camilleri, C.3    Bouchez, D.4    Benfey, P.N.5
  • 139
    • 1342311267 scopus 로고    scopus 로고
    • Phylogenetic relationships of the sweet potato in Ipomoea series Batatas (Convolvulaceae) based on nuclear beta-amylase gene sequences
    • Rajapakse S., Nilmalgoda S., Molnar M., Ballard R., Austin D., Bohac J. Phylogenetic relationships of the sweet potato in Ipomoea series Batatas (Convolvulaceae) based on nuclear beta-amylase gene sequences. Mol. Phylogenet. Evol. 2004, 30:623-632.
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 623-632
    • Rajapakse, S.1    Nilmalgoda, S.2    Molnar, M.3    Ballard, R.4    Austin, D.5    Bohac, J.6
  • 140
    • 0036727870 scopus 로고    scopus 로고
    • GAI homologues in the Hawaiian silversword alliance (Asteraceae-Madiinae): molecular evolution of growth regulators in a rapidly diversifying plant lineage
    • Remington D.L., Purugganan M.D. GAI homologues in the Hawaiian silversword alliance (Asteraceae-Madiinae): molecular evolution of growth regulators in a rapidly diversifying plant lineage. Mol. Biol. Evol. 2002, 19:1563-1574.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1563-1574
    • Remington, D.L.1    Purugganan, M.D.2
  • 141
    • 79959768281 scopus 로고    scopus 로고
    • Phylogenetic analysis of the grape family (Vitaceae) based on the noncoding plastid trnC-petN, trnH-psbA, and trnL-F sequences
    • Ren H., Lu L.-M., Soejima A., Luke Q., Zhang D.-X., Chen Z.-D., Wen J. Phylogenetic analysis of the grape family (Vitaceae) based on the noncoding plastid trnC-petN, trnH-psbA, and trnL-F sequences. Taxon 2011, 60:629-637.
    • (2011) Taxon , vol.60 , pp. 629-637
    • Ren, H.1    Lu, L.-M.2    Soejima, A.3    Luke, Q.4    Zhang, D.-X.5    Chen, Z.-D.6    Wen, J.7
  • 143
    • 63449129261 scopus 로고    scopus 로고
    • Nitrate reductase phylogeny of potato (Solanum sect. Petota) genomes with emphasis on the origins of the polyploid species
    • Rodríguez F., Spooner D.M. Nitrate reductase phylogeny of potato (Solanum sect. Petota) genomes with emphasis on the origins of the polyploid species. Syst. Bot. 2009, 34:207-219.
    • (2009) Syst. Bot. , vol.34 , pp. 207-219
    • Rodríguez, F.1    Spooner, D.M.2
  • 144
    • 41549105074 scopus 로고    scopus 로고
    • Reconstructing the phylogeny of figs (Ficus, Moraceae) to reveal the history of fig pollination mutualism
    • Ronsted N., Weiblen G.D., Clement W.L., Zerega N.J.C., Savolainen V. Reconstructing the phylogeny of figs (Ficus, Moraceae) to reveal the history of fig pollination mutualism. Symbiosis 2008, 45:1-12.
    • (2008) Symbiosis , vol.45 , pp. 1-12
    • Ronsted, N.1    Weiblen, G.D.2    Clement, W.L.3    Zerega, N.J.C.4    Savolainen, V.5
  • 145
    • 84887212436 scopus 로고    scopus 로고
    • Phylogenomics: gene duplication, unrecognized paralogy and outgroup choice
    • Roy S.W. Phylogenomics: gene duplication, unrecognized paralogy and outgroup choice. PLoS One 2009, 4(2):e4568.
    • (2009) PLoS One , vol.4 , Issue.2
    • Roy, S.W.1
  • 147
    • 0030966299 scopus 로고    scopus 로고
    • Evolution of alcohol dehydrogenase genes in peonies (Paeonia): phylogenetic relationships of putative nonhybrid species
    • Sang T., Donoghue M.J., Zhang D. Evolution of alcohol dehydrogenase genes in peonies (Paeonia): phylogenetic relationships of putative nonhybrid species. Mol. Biol. Evol. 1997, 14:994-1007.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 994-1007
    • Sang, T.1    Donoghue, M.J.2    Zhang, D.3
  • 148
    • 77950029429 scopus 로고    scopus 로고
    • Phylogenetic estimation of the core Bromelioids with an emphasis on the genus Aechmea (Bromeliaceae)
    • Sass C., Specht C.D. Phylogenetic estimation of the core Bromelioids with an emphasis on the genus Aechmea (Bromeliaceae). Mol. Phylogenet. Evol. 2010, 55:559-571.
    • (2010) Mol. Phylogenet. Evol. , vol.55 , pp. 559-571
    • Sass, C.1    Specht, C.D.2
  • 149
    • 34347373139 scopus 로고    scopus 로고
    • A screen of low-copy nuclear genes reveals the LFY gene as phylogenetically informative in closely related species of orchids (Ophrys)
    • Schlüter P.M., Kohl G., Stuessy T.F., Paulus H.F. A screen of low-copy nuclear genes reveals the LFY gene as phylogenetically informative in closely related species of orchids (Ophrys). Taxon 2007, 56:493-504.
    • (2007) Taxon , vol.56 , pp. 493-504
    • Schlüter, P.M.1    Kohl, G.2    Stuessy, T.F.3    Paulus, H.F.4
  • 150
    • 0036116424 scopus 로고    scopus 로고
    • The evolution of gymnosperms redrawn by phytochrome genes: the Gnetatae appear at the base of the gymnosperms
    • Schmidt M., Schneider-Poetsch H.A. The evolution of gymnosperms redrawn by phytochrome genes: the Gnetatae appear at the base of the gymnosperms. J. Mol. Evol. 2002, 54:715-724.
    • (2002) J. Mol. Evol. , vol.54 , pp. 715-724
    • Schmidt, M.1    Schneider-Poetsch, H.A.2
  • 151
    • 0037494990 scopus 로고    scopus 로고
    • Differential activities of the Arabidopsis phyB/D/E phytochromes in complementing phyB mutant phenotypes
    • Sharrock R.A., Clack T., Goosey L. Differential activities of the Arabidopsis phyB/D/E phytochromes in complementing phyB mutant phenotypes. Plant Mol. Biol. 2003, 52:135-142.
    • (2003) Plant Mol. Biol. , vol.52 , pp. 135-142
    • Sharrock, R.A.1    Clack, T.2    Goosey, L.3
  • 152
    • 0038029867 scopus 로고    scopus 로고
    • Signaling activities among the Arabidopsis phyB/D/E-type phytochromes: a major role for the central region of the apoprotein
    • Sharrock R.A., Clack T., Goosey L. Signaling activities among the Arabidopsis phyB/D/E-type phytochromes: a major role for the central region of the apoprotein. Plant J. 2003, 34:317-326.
    • (2003) Plant J. , vol.34 , pp. 317-326
    • Sharrock, R.A.1    Clack, T.2    Goosey, L.3
  • 154
    • 34250767339 scopus 로고    scopus 로고
    • Comparison of whole chloroplast sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III
    • Shaw J., Lickey E.B., Schilling E.E., Small R.L. Comparison of whole chloroplast sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am. J. Bot. 2007, 94:275-288.
    • (2007) Am. J. Bot. , vol.94 , pp. 275-288
    • Shaw, J.1    Lickey, E.B.2    Schilling, E.E.3    Small, R.L.4
  • 156
    • 0034979778 scopus 로고    scopus 로고
    • Phylogeny of the Celastraceae inferred from 26S nuclear ribosomal DNA, Phytochrome B, rbcL, atpB, and morphology
    • Simmons M.P., Savolainen V., Clevinger C.C., Archer R.H., David J.I. Phylogeny of the Celastraceae inferred from 26S nuclear ribosomal DNA, Phytochrome B, rbcL, atpB, and morphology. Mol. Phylogenet. Evol. 2001, 19:353-366.
    • (2001) Mol. Phylogenet. Evol. , vol.19 , pp. 353-366
    • Simmons, M.P.1    Savolainen, V.2    Clevinger, C.C.3    Archer, R.H.4    David, J.I.5
  • 157
    • 2342526369 scopus 로고    scopus 로고
    • Phylogeny of Hibiscus sect. Muenchhusia (Malvaceae) based on chloroplast rpL16 and ndhF, and nuclear ITS, and nuclear GBSSI sequences
    • Small R. Phylogeny of Hibiscus sect. Muenchhusia (Malvaceae) based on chloroplast rpL16 and ndhF, and nuclear ITS, and nuclear GBSSI sequences. Syst. Bot. 2004, 29:385-392.
    • (2004) Syst. Bot. , vol.29 , pp. 385-392
    • Small, R.1
  • 158
    • 0346091308 scopus 로고    scopus 로고
    • L.A.S. Johnson REVIEW No. 2 - use of nuclear genes for phylogeny reconstruction in plants
    • Small R., Cronn R.C., Wendel J.F. L.A.S. Johnson REVIEW No. 2 - use of nuclear genes for phylogeny reconstruction in plants. Austral. Syst. Bot. 2004, 17:145-170.
    • (2004) Austral. Syst. Bot. , vol.17 , pp. 145-170
    • Small, R.1    Cronn, R.C.2    Wendel, J.F.3
  • 159
    • 8844273432 scopus 로고    scopus 로고
    • Phylogenetic analysis within tribes Gloxinieae and Gesnerieae (Gesnerioideae: Gesneriaceae)
    • Smith J.F., Draper S.B., Hileman L.C., Baum D.A. Phylogenetic analysis within tribes Gloxinieae and Gesnerieae (Gesnerioideae: Gesneriaceae). Syst. Bot. 2004, 29:947-958.
    • (2004) Syst. Bot. , vol.29 , pp. 947-958
    • Smith, J.F.1    Draper, S.B.2    Hileman, L.C.3    Baum, D.A.4
  • 160
    • 32544444983 scopus 로고    scopus 로고
    • Phylogenetic analysis of the grape family (Vitaceae) based on three chloroplast markers
    • Soejima A., Wen J. Phylogenetic analysis of the grape family (Vitaceae) based on three chloroplast markers. Am. J. Bot. 2006, 93:278-287.
    • (2006) Am. J. Bot. , vol.93 , pp. 278-287
    • Soejima, A.1    Wen, J.2
  • 164
    • 0031081404 scopus 로고    scopus 로고
    • Nuclear DNA-based markers for plant evolutionary biology
    • Strand A.E., Leebens-Mack J., Milligan B.G. Nuclear DNA-based markers for plant evolutionary biology. Mol. Ecol. 1997, 6:113-118.
    • (1997) Mol. Ecol. , vol.6 , pp. 113-118
    • Strand, A.E.1    Leebens-Mack, J.2    Milligan, B.G.3
  • 165
    • 33746387557 scopus 로고    scopus 로고
    • Testing the polyploid past of soybean using a low-copy nuclear gene - is Glycine (Fabaceae: Papilionoideae) an auto- or allopolyploid?
    • Straub S.C.K., Pfeil B.E., Doyle J.J. Testing the polyploid past of soybean using a low-copy nuclear gene - is Glycine (Fabaceae: Papilionoideae) an auto- or allopolyploid?. Mol. Phylogenet. Evol. 2006, 39:580-584.
    • (2006) Mol. Phylogenet. Evol. , vol.39 , pp. 580-584
    • Straub, S.C.K.1    Pfeil, B.E.2    Doyle, J.J.3
  • 166
    • 84858588968 scopus 로고    scopus 로고
    • Navigating the tip of the genomic iceberg: next-generation sequencing for plant systematics
    • Straub S.C.K., Parks M., Weitemier K., Fishbein M., Cronn R.C., Liston A. Navigating the tip of the genomic iceberg: next-generation sequencing for plant systematics. Am. J. Bot. 2012, 99:349-364.
    • (2012) Am. J. Bot. , vol.99 , pp. 349-364
    • Straub, S.C.K.1    Parks, M.2    Weitemier, K.3    Fishbein, M.4    Cronn, R.C.5    Liston, A.6
  • 167
    • 84858608318 scopus 로고    scopus 로고
    • Designing a transcriptome next-generation sequencing project for a nonmodel plant species
    • Strickler S.R., Bombarely A., Mueller L.A. Designing a transcriptome next-generation sequencing project for a nonmodel plant species. Am. J. Bot. 2012, 99:257-266.
    • (2012) Am. J. Bot. , vol.99 , pp. 257-266
    • Strickler, S.R.1    Bombarely, A.2    Mueller, L.A.3
  • 168
    • 79953234854 scopus 로고    scopus 로고
    • The plant ADH gene family
    • Strommer J. The plant ADH gene family. Plant J. 2011, 66:128-142.
    • (2011) Plant J. , vol.66 , pp. 128-142
    • Strommer, J.1
  • 170
    • 79955402136 scopus 로고    scopus 로고
    • P hylogenetic analyses of DNA sequences with chromosomal with chromosomal and morphological data confirm and refine sectional and series classification within elampodium (Asteraceae, Millerieae)
    • Stuessy T.F., Blöch C., Villasenor J., Rebernig C., Weiss-Schneeweiss H. P hylogenetic analyses of DNA sequences with chromosomal with chromosomal and morphological data confirm and refine sectional and series classification within elampodium (Asteraceae, Millerieae). Taxon 2011, 60:436-449.
    • (2011) Taxon , vol.60 , pp. 436-449
    • Stuessy, T.F.1    Blöch, C.2    Villasenor, J.3    Rebernig, C.4    Weiss-Schneeweiss, H.5
  • 171
    • 0001254429 scopus 로고
    • Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae
    • Suh Y., Thien L., Reeve H., Zimmer E.A. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. Am. J. Bot. 1993, 80:1042-1055.
    • (1993) Am. J. Bot. , vol.80 , pp. 1042-1055
    • Suh, Y.1    Thien, L.2    Reeve, H.3    Zimmer, E.A.4
  • 172
    • 34447116505 scopus 로고    scopus 로고
    • Molecular evolution and genome divergence at RPB2 gene of the St and H genomes in Elymus species
    • Sun G., Daley A., Ni Y. Molecular evolution and genome divergence at RPB2 gene of the St and H genomes in Elymus species. Plant Mol. Biol. 2007, 64:645-655.
    • (2007) Plant Mol. Biol. , vol.64 , pp. 645-655
    • Sun, G.1    Daley, A.2    Ni, Y.3
  • 173
    • 40849145332 scopus 로고    scopus 로고
    • Molecular phylogeny of RPB2 gene reveals multiple origins, geographic differentiation of the H genome and the relationship of the Y genome to other genomes in Elymus species
    • Sun G., Ni Y., Daley T. Molecular phylogeny of RPB2 gene reveals multiple origins, geographic differentiation of the H genome and the relationship of the Y genome to other genomes in Elymus species. Mol. Phylogenet. Evol. 2008, 46:897-907.
    • (2008) Mol. Phylogenet. Evol. , vol.46 , pp. 897-907
    • Sun, G.1    Ni, Y.2    Daley, T.3
  • 174
    • 64949127125 scopus 로고    scopus 로고
    • Molecular evolution and phylogeny of the rpb2 gene in the genus Hordeum
    • Sun G., Pourkheirandish M., Komatsuda T. Molecular evolution and phylogeny of the rpb2 gene in the genus Hordeum. Ann. Bot. 2009, 103:975-983.
    • (2009) Ann. Bot. , vol.103 , pp. 975-983
    • Sun, G.1    Pourkheirandish, M.2    Komatsuda, T.3
  • 176
    • 84866170116 scopus 로고    scopus 로고
    • Challenges and strategies for next generation sequencing (NGS) data analysis
    • Thakur V., Varshney R. Challenges and strategies for next generation sequencing (NGS) data analysis. J. Comput. Sci. Syst. Biol. 2010, 3:40-42.
    • (2010) J. Comput. Sci. Syst. Biol. , vol.3 , pp. 40-42
    • Thakur, V.1    Varshney, R.2
  • 179
    • 55249107104 scopus 로고    scopus 로고
    • Phylogeny of Nolana (Solanaceae) of the Atacama and Peruvian deserts inferred from sequences of four plastid markers and the nuclear LEAFY second intron
    • Tu T., Dillon M.O., Sun H., Wen J. Phylogeny of Nolana (Solanaceae) of the Atacama and Peruvian deserts inferred from sequences of four plastid markers and the nuclear LEAFY second intron. Mol. Phylogenet. Evol. 2008, 49:561-573.
    • (2008) Mol. Phylogenet. Evol. , vol.49 , pp. 561-573
    • Tu, T.1    Dillon, M.O.2    Sun, H.3    Wen, J.4
  • 184
    • 0034751894 scopus 로고    scopus 로고
    • Phylogenetic relationships of Capsicum (Solanaceae) using DNA sequences from two noncoding regions: the chloroplast atpB-rbcL spacer region and nuclear waxy introns
    • Walsh B.M., Hoot S.B. Phylogenetic relationships of Capsicum (Solanaceae) using DNA sequences from two noncoding regions: the chloroplast atpB-rbcL spacer region and nuclear waxy introns. Int. J. Plant Sci. 2001, 16:1409-1418.
    • (2001) Int. J. Plant Sci. , vol.16 , pp. 1409-1418
    • Walsh, B.M.1    Hoot, S.B.2
  • 185
    • 2542461412 scopus 로고    scopus 로고
    • Phylogenetic position of Titanotrichum oldhamii (Gesneriaceae) inferred from four different gene regions
    • Wang C.-N., Moller M., Cronk C.B. Phylogenetic position of Titanotrichum oldhamii (Gesneriaceae) inferred from four different gene regions. Syst. Bot. 2004, 29:407-418.
    • (2004) Syst. Bot. , vol.29 , pp. 407-418
    • Wang, C.-N.1    Moller, M.2    Cronk, C.B.3
  • 187
    • 0036007916 scopus 로고    scopus 로고
    • Arabidopsis RGL1 encodes a negative regulator of gibberellin responses
    • Wen C.-K., Chang C. Arabidopsis RGL1 encodes a negative regulator of gibberellin responses. Plant Cell 2002, 14:87-100.
    • (2002) Plant Cell , vol.14 , pp. 87-100
    • Wen, C.-K.1    Chang, C.2
  • 188
    • 36148998373 scopus 로고    scopus 로고
    • Phylogeny of Vitaceae based on the nuclear GAI1 gene sequences
    • Wen J., Nie Z.-L., Soejima A., Meng Y. Phylogeny of Vitaceae based on the nuclear GAI1 gene sequences. Can. J. Bot. 2007, 85:731-745.
    • (2007) Can. J. Bot. , vol.85 , pp. 731-745
    • Wen, J.1    Nie, Z.-L.2    Soejima, A.3    Meng, Y.4
  • 189
    • 77949302709 scopus 로고    scopus 로고
    • Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing
    • Wheat C. Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing. Genetica 2010, 138:433-451.
    • (2010) Genetica , vol.138 , pp. 433-451
    • Wheat, C.1
  • 191
    • 79956344248 scopus 로고    scopus 로고
    • Estimating the species tree for Hawaiian Scheidea (Caryophllaceae) from multiple loci in the presence of reticulate evolution
    • Willyard A., Wallace L., Wagner W.L., Weller S., Sakai A., Nepokroeff M. Estimating the species tree for Hawaiian Scheidea (Caryophllaceae) from multiple loci in the presence of reticulate evolution. Mol. Phylogenet. Evol. 2011, 60:29-48.
    • (2011) Mol. Phylogenet. Evol. , vol.60 , pp. 29-48
    • Willyard, A.1    Wallace, L.2    Wagner, W.L.3    Weller, S.4    Sakai, A.5    Nepokroeff, M.6
  • 192
    • 33751344142 scopus 로고    scopus 로고
    • Combining informatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade
    • Wu F.L., Mueller A., Crouzillat D., Petiard V., Tanksley S.D. Combining informatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade. Genetics 2006, 174:1407-1420.
    • (2006) Genetics , vol.174 , pp. 1407-1420
    • Wu, F.L.1    Mueller, A.2    Crouzillat, D.3    Petiard, V.4    Tanksley, S.D.5
  • 193
    • 34447299926 scopus 로고    scopus 로고
    • Phylogeny of Rhus (Anacardiaceae) based on sequences of nuclear Nia-i3 intron and chloroplast trnC-trnD
    • Yi T.-S., Miller A.J., Wen J. Phylogeny of Rhus (Anacardiaceae) based on sequences of nuclear Nia-i3 intron and chloroplast trnC-trnD. Syst. Bot. 2007, 32:379-391.
    • (2007) Syst. Bot. , vol.32 , pp. 379-391
    • Yi, T.-S.1    Miller, A.J.2    Wen, J.3
  • 194
    • 38849102893 scopus 로고    scopus 로고
    • Phylogenetics and reticulate evolution in Pistacia (Anacardiaceae)
    • Yi T., Wen J., Golan-Goldhirsh A., Parfitt D.E. Phylogenetics and reticulate evolution in Pistacia (Anacardiaceae). Am. J. Bot. 2008, 95:241-251.
    • (2008) Am. J. Bot. , vol.95 , pp. 241-251
    • Yi, T.1    Wen, J.2    Golan-Goldhirsh, A.3    Parfitt, D.E.4
  • 195
    • 0025824550 scopus 로고
    • Molecular cloning and expression in Escherichia coli of cDNA encoding the subunit of sweetpotato β-amylase
    • Yoshida N., Nakamura K. Molecular cloning and expression in Escherichia coli of cDNA encoding the subunit of sweetpotato β-amylase. J. Biochem. 1991, 110:196-201.
    • (1991) J. Biochem. , vol.110 , pp. 196-201
    • Yoshida, N.1    Nakamura, K.2
  • 196
    • 0026761191 scopus 로고
    • A nuclear gene encoding β-amylase of sweet potato
    • Yoshida N., Hayashi K., Nakamura K. A nuclear gene encoding β-amylase of sweet potato. Gene 1992, 120:255-259.
    • (1992) Gene , vol.120 , pp. 255-259
    • Yoshida, N.1    Hayashi, K.2    Nakamura, K.3
  • 198
    • 0031253701 scopus 로고    scopus 로고
    • Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae)
    • Zhang W., Wendel J., Clark L. Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae). Mol. Phylogenet. Evol. 1997, 8:205-217.
    • (1997) Mol. Phylogenet. Evol. , vol.8 , pp. 205-217
    • Zhang, W.1    Wendel, J.2    Clark, L.3
  • 199
    • 33847661877 scopus 로고    scopus 로고
    • Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice
    • Zhu Q., Zheng X., Luo J., Gaut B., Ge S. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Mol. Biol. Evol. 2007, 24:875-888.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 875-888
    • Zhu, Q.1    Zheng, X.2    Luo, J.3    Gaut, B.4    Ge, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.