A phylogenetic analysis within tribes gloxinieae and gesnerieae (Gesnerioideae: Gesneriaceae)

Systematic Botany

Volumn 29, Issue 4, 2004, Pages 947-958

  Smith, James F ^a   Draper, Scottie B ^a   Hileman, Lena C ^b,d   Baum, David A ^c  

^a BOISE STATE UNIVERSITY   (United States)

^b HARVARD UNIVERSITY   (United States)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

^d YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASTERIDS; GESNERIACEAE; GESNERIEAE; GESNERIOIDEAE; PHINAEA;

EID: 8844273432     PISSN: 03636445     EISSN: None     Source Type: Journal    
DOI: 10.1600/0363644042451116     Document Type: Article

References (73)

1. ALMEIDA, J., M. ROCHETA, and L. GALEGO. 1997. Genetic control of flower shape in Antirrhinum majus. Development 124: 1387-1392.
2. THE ANGIOSPERM PHYLOGENY GROUP. 1998. An ordinal classification for the families of flowering plants. Annals of the Missouri Botanical Garden 85: 531-553.
3. ALTSCHUL, S. F., T. F. MADDEB., A. A. SCHÄFFER, J. ZHANG, Z. ZHANG, W. MILLER, and D. J. LIPMAN. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein databases search programs. Nucleic Acids Research 25: 3389-3402.
4. BALDWIN, B. G., M. J. SANDERSON, J. M. PORTER, M. F. WOJCIECHOWSKI, C. S. CAMPBELL, and M. J. DONOGHUE. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence of angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
5. BAUM, D. A. 1998. The evolution of plant development. Current Opinion in Plant Biology 1: 79-86.
6. _, K. J. SYTSMA, and P. C. HOCH. 1994. A phylogenetic analysis of Epilobium (Onagraceae) based on nuclear ribosomal DNA sequences. Systematic Botany 19: 363-388.
7. BEAUFORT-MURPHY, H. T. 1983. The seed surface morphology of the Gesneriaceae utilizing the scanning electron microscope and a new system for diagnosing seed morphology. Selbyana 6: 220-422.
8. BROUAT, C., L. GIELLY, and D. MCKEY. 2001. Phylogenetic relationships in the genus Leonardoxa (Leguminosae: Caesalpinioideae) inferred from chloroplast trnL intron and trnL-trnF intergenic spacer sequences. American Journal of Botany 88: 143-149.
9. BURTT, B. L. and H. WIEHLER. 1995. Classification of the family Gesneriaceae. Gesneriana 1: 1-4.
10. CITERNE, H. L., M. MÖLLER, and Q. C. B. CRONK. 2000. Diversity of cycloidea-like genes in Gesneriaceae in relation to floral symmetry. Annals of Botany 86: 167-176.
11. COEN, E. S. 1996. Floral symmetry. EMBO Journal 15: 6777-6788.
12. _ and J. M. NUGENT. 1994. Evolution of flowers and inflorescences. Development Supplement: 107-116.
13. _, J. M. NUGENT, D. LUO, D. BRADLEY, P. CUBAS, M. CHADWICK, L. COPSEY, and R. CARPENTER. 1995. Evolution of floral symmetry. Philosophical Transactions of the Royal Society of London B 350: 35-38.
14. CRONK, Q. C. B., 2002. Perspectives and paradigms in plant evodevo. Pp. 1-14 in Developmental genetics and plant evolution, eds. Q. C. B. Cronk, R. M. Bateman, and J. A. Hawkins. New York: Taylor and Francis.
15. _ and M. MÖLLER. 1997. Genetics of floral symmetry revealed. Trends in Ecology and Evolution 12: 85-86.
16. CUBAS, P. 2002. Role of TCP genes in the evolution of morphological characters in angiosperms. Pp. 247-266 in Developmental genetics and plant evolution, eds. Q. C. B. Cronk, R. M. Bateman, and J. A. Hawkins. New York: Taylor and Francis.
17. DONOGHUE, M. J., R. H. REE, and D. A. BAUM. 1998. Phylogeny and the evolution of flower symmetry in the Asteridae. Trends in Plant Science 3: 311-317.
18. ELDENÄS, P. K. and H. P. LINDER. 2000. Congruence and complementarity of morphological and trnL-trnF sequence data and the phylogeny of the African Restionaceae. Systematic Botany 25: 692-706.
19. EMSHWILLER, E. and J. J. DOYLE. 1999. Chloroplast-expressed glutamine synthetase (ncpGS): potential utility for phylogenetic studies with an example from Oxalis (Oxalidaceae). Molecular Phylogenetics and Evolution. 12: 310-319.
20. ENDRESS, P. K., 1997. Evolutionary biology of flowers: prospects for the next century. Pp. 99-119 in Evolution and diversification, eds. K. Iwatuski and P. H. Raven. Tokyo: Springer.
21. FARRIS, S. J. M. KÄLLERSJÖ, A. G. KLUGE, and C. BULT. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
22. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
23. FEUILLET, C. and L. E. SKOG. 2003. Novae Gesneriaceae Neotropicarum XI. New genera and species from the Guianas. Brittonia 54: 344-351.
24. GILLIES, A. C. M., P. CUBAS, E. S. COEN, and R. J. ABBOTT. 2002. Making rays in the Asteraceae: genetics and evolution of radiate versus discoid flower heads. Pp. 233-246 in Developmental genetics and plant evolution, eds. Q. C. B. Cronk, R. M. Bateman, and J. A. Hawkins. New York: Taylor and Francis.
25. HAMILTON, M. B. 1999. Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Molecular Ecology 8: 521-523.
26. HILEMAN, L. C. and D. A. BAUM. 2003. Why do paralogs persist? Molecular evolution of CYCLOIDEA and related floral symmetry genes in Antirrhineae (Veronicaceae). Molecular Biology and Evolution 20: 591-600.
27. _, E. M. KRAMER, and D. A. BAUM. 2003. Differential regulation of symmetry genes and the evolution of novel floral morphologies. Proceedings of the National Academy of Science, USA 100: 12814-12819.
28. HUELSENBECK, J. P. and F. RONQUIST. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
29. KVIST, L. P. 1990. Revision of Heppiella. Systematic Botany 15: 720-735.
30. _ and L. E. SKOG. 1992. Revision of Kohleria (Gesneriaceae). Smithsonian Contributions to Botany 79: 1-83.
31. _ and _. 1996. Revision of Pearcea (Gesneriaceae). Smithsonian Contributions to Botany 84: 1-47.
32. LEEUWENBERG, A. J. M. 1958. The Gesneriaceae of Guiana. Acta Botanica Neerlandica 7: 291-444.
33. LUO, D, R. CARPENTER, C. VINCENT, L. COPSEY, and E. COEN. 1996. Origin of floral asymmetry in Antirrhinum. Nature 383: 794-799.
34. _, R. CARPENTER, L. COPSEY, C. VINCENT, J. CLARK, and E. COEN. 1999. Control of organ asymmetry in flowers of Antirrhinum. Cell 99: 367-376.
35. MANKTELOW, M., L. A. MCDADE, B. OXELMAN, C. A. FURNESS, and M-J. BALKWILL. 2001. The enigmatic tribe Whitfieldieae (Acanthaceae): delimitation and phylogenetic relationships based on molecular and morphological data. Systematic Botany 26: 104-119.
36. MASON-GAMER, R. J. and E. A. KELLOGG. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
37. MÖLLER, M. and Q. C. B. CRONK. 1997. Origin and relationships of Saintpaulia (Gesneriaceae) based on ribosomal DNA internal transcribed spacer (ITS) sequences. American Journal of Botany 84: 956-965.
38. _, M. CLOKIE, P. CUBAS, and Q. C. B. CRONK. 1999. Integrating molecular phylogenies and developmental genetics: a Gesneriaceae case study. Pp. 375-402 in Molecular systematics and plant evolution, eds. P. M. Hollingsworth, R. M. Bateman, and R. J. Gornall. London: Taylor and Francis.
39. OLMSTEAD, R. G. and J. D. PALMER. 1994. Chloroplast DNA systematics: a review of methods and data analysis. American Journal of Botany 81: 1205-1224.
40. PERRET, M., A. CHAUTEMS, R. SPICHIGER, G. KITE, and V. SAVOLAINEN. 2003. Systematics and evolution of tribe Sinningieae (Gesneriaceae): evidence from phylogenetic analyses of six plastid DNA regions and nuclear ncpGS. American Journal of Botany 90: 445-460.
41. POSADA, D. and K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
42. REEVES, P. A. and R. G. OLMSTEAD. 1998. Evolution of novel morphological and reproductive traits in a clade containing Antirrhinum majus (Scrophulariaceae). American Journal of Botany 85: 1047-1056.
43. RUNNING, M. P. 1997. Making asymmetric flowers. Current Biology 7: R89-R91.
44. SALATTNO, A., M. LUIZA F. SALATINO, R. DE MELLO-SILVA, M-A. VAN SLUYS, D. E. GIANNASI, and R. A. PRICE. 2001. Phylogenetic inference in Velloziaceae using chloroplast trnL-F sequences. Systematic Botany 26: 92-103.
45. SEELANAN, T., A. SCHNABEL, and J. F. WENDEL. 1997. Congruence and consensus in the cotton tribe (Malvaceae). Systematic Botany 22: 259-290.
46. SIMMONS, M. P. and H. OCHOTERENA. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369-381.
47. SKOG, L. E. 1976. A study of the tribe Gesnerieae, with a revision of Gesneria (Gesneriaceae: Gesnerioideae). Smithsonian Contributions to Botany 29: 1-182.
48. _. 1984. A review of chromosome numbers in the Gesneriaceae. Selbyana 7: 252-273.
49. SMITH, J. F. 1996. Tribal relationships within the Gesneriaceae: a cladistic analysis of morphological data. Systematic Botany 21: 497-514.
50. _. 2000a. An assessment of three data sets in phylogenetic analysis: tribal relationships within the Gesneriaceae as a model. Plant Systematics and Evolution. 221: 179-198.
51. _. 2000b. Phylogenetic resolution within the tribe Episcieae (Gesneriaceae): congruence of ITS and ndhF sequences from parsimony and maximum-likelihood analyses. American Journal of Botany 87: 883-897.
52. _. 2000c. A phylogenetic analysis of tribes Beslerieae and Napeantheae (Gesneriaceae) and evolution of fruit types: parsimony and maximum likelihood analyses of ndhF sequences. Systematic Botany 25: 72-81.
53. _. 2001. The Phylogenetic Relationships of Lembocarpus and Goyazia (Gesneriaceae) based on ndhF sequences. Annals of the Missouri Botanical Garden 88: 135-143.
54. _ and S. ATKINSON. 1998. Phylogenetic analysis of the tribes Gloxinieae and Gesnerieae (Gesneriaceae): data from ndhF Sequences. Selbyana 19: 122-131.
55. _ and C. L. CARROLL. 1997. Phylogenetic relationships of the Episcieae (Gesneriaceae) based on ndhF sequences. Systematic Botany 22: 713-724.
56. _, L. C. HILEMAN, M. POWELL, and D. A. BAUM. 2004. Evolution of G CYC, a Gesneriaceae homolog of CYCLOIDEA, within subfamily Gesnerioideae (Gesneriaceae). Molecular Phylogenetics and Evolution 31: 765-779.
57. _, M. KRESGE, M. MÖLLER, and Q. C. CRONK. 1998. The African violets (Saintpaulia) are members of Streptocarpus subgenus Streptocarpella (Gesneriaceae): combined evidence from chloroplast and nuclear ribosomal genes. Edinburgh Journal of Botany 55: 1-11.
58. _, K. J. SYTSMA, J. S. SHOEMAKER, and R. L. SMITH. 1992. A qualitative comparison of total cellular DNA extraction protocols. Phytochemical Bulletin 23: 2-9.
59. _, J. C. WOLFRAM, K. D. BROWN, C. L. CARROLL, and D. S. DENTON. 1997. Tribal relationships in the Gesneriaceae: Evidence from DNA sequences of the chloroplast gene ndhF. Annals of the Missouri Botanical Garden 84: 50-66.
60. SOLTIS, D. E. and R. K. KUZOFF. 1995. Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae). Evolution 49: 727-742.
61. _, P. S. SOLTIS, M. E. MORT, M. W. CHASE, V. SAVOLAINEN, S. B. HOOT, and C. M. MORTON. 1998. Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms. Systematic Biology 47: 32-42.
62. SUH, Y., L. B. THIEN, H. E. REEVE, and E. A. ZIMMER. 1993. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. American Journal of Botany 80: 1042-1055.
63. SWEENEY, P. W. and R. A PRICE. 2000. Polyphyly of the genus Dentaria (Brassicaceae): evidence from trnL intron and ndhF sequence data. Systematic Botany 25: 468-478.
64. SWOFFORD, D. L. 2000. PAUP* Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4.0b10. Sunderland: Sinauer Associates.
65. TABERLET, P., L. GIELLY, G. PAUTOU, and J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
66. THEIßEN, G. 2000. Evolutionary developmental genetics of floral symmetry: the revealing power of Linnaeus' monstrous flower. BioEssays 22: 209-213.
67. WIEHLER, H. 1983. A synopsis of the neotropical Gesneriaceae. Selbyana 6: 1-249.
68. YANG, Z. 1994. Estimating the pattern of nucleotide substitution. Journal of Molecular Evolution 39: 105-111.
69. _. 2000. Phylogenetic analysis by maximum likelihood (PAML), Version 3.0. London: University College London.
70. YEN, A. C. and R. G. OLMSTEAD. 2000. Molecular systematics of Cyperaceae tribe Cariceae based on two chloroplast DNA regions: ndhF and trnL intron-intergenic spacer. Systematic Botany 25: 479-494.
71. YUAN, Y-M., P. KÜPFER, and J. J. DOYLE. 1996. Infrageneric phylogeny of the genus Gentiana (Gentianaceae) inferred from nucleotide sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA. American Journal of Botany 83: 641-652.
72. ZHAORAN, X. and L. E. SKOG. 1990. A study of Bellonia L. (Gesneriaceae). Acta Scientarium Naturalium Universitatis Sunyatseni (supplement) 9: 95-107.
73. ZIMMER, E. A., E. H. ROALSON, L. E. SKOG, J. K. BOGGAN, and A. INDURM. 2002. Phylogenetic relationships in the Gesnerioideae (Gesneriaceae) based on nrDNA ITS and cpDNA trnL-F and trnE-T spacer region sequences. American Journal of Botany 89: 296-311.