Granule-bound starch synthase (GBSSI) gene phylogeny of wild tomatoes (Solanum L. section Lycopersicon [Mill.] Wettst. subsection Lycopersicon)

American Journal of Botany

Volumn 88, Issue 1-12, 2001, Pages 1888-1902

  Peralta, Iris E ^a,b   Spooner, David M ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSIDAD NACIONAL DE CUYO   (Argentina)

Author keywords

GBSSI; Lycopersicon; Phylogeny; Solanaceae; Solanum sect. Lycopersicon; Tomato; Waxy gene

Indexed keywords

EID: 0000881217     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.2307/3558365     Document Type: Article

References (79)

1. BAMBERG, J. B., M. W. MARTIN, J. J. SCHARTNER, AND D. M. SPOONER. 1996. Inventory of tuber-bearing Solanum species. Catalog of potato germplasm. Potato Introduction Station, National Research Support Program-6 (NRSP-6). Sturgeon Bay, Wisconsin, USA.
2. BAUM, D. A., K. J. SYTSMA, AND P. C. HOCH. 1994. A phylogenetic analysis of Epilobium (Onagraceae) based on nuclear ribosomal DNA sequences. Systematic Botany 19: 363-388.
3. BOHS, L., AND R. G. OLMSTEAD. 1997. Phylogenetic relationships in Solanum (Solanaceae) base on ndhF sequences. Systematic Botany 22: 5-17.
4. BOHS, L., AND R. G. OLMSTEAD. 1999. Solanum phylogeny inferred from chloroplast DNA sequence data. In M. Nee, D. E. Symon, R. N. Lester, and J. P. Jessop [eds.], Solanaceae IV, advances in biology and utilization, 97-110. Royal Botanic Gardens, Kew, UK.
5. BÖRNER, C. 1912. Solanum L. und Solanopsis gen. nov. Abhandlungen herausgegeben vom Naturwissenschaftlichen Verein zu Bremen 21: 282.
6. BREMER, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795-803.
7. BRETÓ, M. P., M. J. ASINS, AND E. A. CARBONELL. 1993. Genetic variability in Lycopersicon species and their genetic relationships. Theoretical and Applied Genetics 86: 113-120.
8. BROUN, P., AND S. D. TANKSLEY. 1996. Characterization and mapping of simple repeat sequences in the tomato genome. Molecular and General Genetics 250: 39-49.
9. CHEN, F. Q., AND M. R. FOOLAD. 1998. A molecular linkage map of tomato based on a cross between Lycopersicon esculentum and L. pimpinellifolium and its comparison with other molecular maps of tomato. Genome 42: 94-103.
10. CHILD, A. 1990. A synopsis of Solanum subgenus Potatoe (G. Don) D'Arcy [Tuberarium (Dun.) Bitter (s.l.)]. Feddes Repertorium 101: 209-235.
11. CLARK, J. R., M. ROBERTSON, AND C. C. AINSWORTH. 1991. Nucleotide sequence of a wheat (Triticum aestivum L.) cDNA clone encoding the waxy protein. Plant Molecular Biology 16: 1099-1101.
12. D'ARCY, W. G. 1987. The circumscription of Lycopersicon. Solanaceae Newsletters 2: 60-61.
13. DONOGHUE, M. J., R. G. OLMSTEAD, J. F. SMITH, AND J. D. PALMER. 1992. Phylogenetic relationships of Dipsacales based on rbcL sequences. Annals of the Missouri Botanical Garden 79: 333-345.
14. DOYLE, J. J., V. KANAZIN, AND R. C. SHOEMAKER. 1996. Phylogenetic utility of histone H3 intron sequences in the perennial relatives of soybean (Glycine; Leguminosae) Molecular Phylogenetics and Evolution 6: 438-447.
15. DRY, I., A. SMITH, A. EDWARDS, M. BHATTACHARYYA, P. DUNN, AND C. MARTIN. 1992. Characterization of cDNAs encoding two isoforms of granule-bound starch synthase which show differential expression in developing storage organs of pea and potato. Plant Journal 2: 193-202.
16. EVANS, R. C., L. A. ALICE, C. S. CAMPBELL, E. A. KELLOGG, AND T. A. DICKINSON. 2000. The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility. Molecular Phylogenetics and Evolution 17: 388-400.
17. FARRIS, J. S. 1989. The retention index and homoplasy excess. Systematic Zoology 38: 406-407.
18. FARRIS, J. S., V. A. ALBERT, M. KÄLLERSJÖ, D. LIPSCOMB, AND A. G. KLUGE. 1996. Parsimony jackknifing outperforms neighbor-joining. Cladistics 12: 99-124.
19. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
20. FOSBERG, F. R. 1987. New nomenclatural combination for Galapagos plant species. Phytologia 62: 181-183.
21. HEINE, H. 1976. Flora de la Nouvelle Caledonie, vol. 7. Musée Nacional D'Histoire Naturelle, Paris, France.
22. HOLLE, M., C. M. RICK, AND D. G. HUNT. 1978. Catalog of collections of green-fruited Lycopersicon species and Solanum pennellii found in watersheds of Peru. Tomato Genetics Cooperative Report 28: 49-78.
23. HOLLE, M., C. M. RICK, AND D. G. HUNT. 1979. Catalog of collections of green-fruited Lycopersicon species and Solanum pennellii found in watersheds of Peru. Tomato Genetics Cooperative Report 29: 63-91.
24. KLÖSGEN, R. B., A. GIERL, Z. S. SCHWARZ-SOMMER, AND H. SAEDLER. 1986. Molecular analysis of the waxy locus of Zea mays. Molecular and General Genetics 203: 237-244.
25. KLUGE, A. G., AND J. S. FARRIS. 1969. Qualitative phyletics and the evolution of anurans. Systematic Zoology 18: 1-32.
26. KNAPP, S., AND D. M. SPOONER. 1999. A new name for a common Ecuatorian and Peruvian wild tomato species. Novon 9: 375-376.
27. LESTER, R. N. 1991. Evolutionary relationships of tomato, potato and pepino, and wild species of Lycopersicon and Solanum. In J. G. Hawkes, R. N. Lester, M. Nee, and N. Estrada [eds.], Solanaceae III: taxonomy, chemistry, evolution. 283-301. Royal Botanic Gardens, Kew, UK.
28. LINNAEUS, C. 1753. Species Plantarum, 1st ed. Holmiae, Stockholm, Sweden.
29. LUCKWILL, L. C. 1943. The genus Lycopersicon: an historical, biological, and taxonomic survey of the wild and cultivated tomatoes. Aberdeen University Studies 120: 1-44.
30. MACBRIDE, J. E 1962. Flora of Peru: Solanaceae. Field Museum of Natural History, Botanical Series 13: 3-267.
31. MASON-GAMER, R. J., AND E. A. KELLOGG. 1996. Potential utility of the nuclear gene way for plant phylogenetic analysis. American Journal of Botany (supplement)83: 178.
32. MASON-GAMER, R. J., C. F. WEIL, AND E. A. KELLOGG. 1998. Granule-bound starch synthase: structure, function, and phylogenetic utility. Molecular Biology and Evolution 15: 1658-1673.
33. MCCLEAN, P. E., AND M. R. HANSON. 1986. Mitochondrial DNA sequence divergence among Lycopersicon and related Solanum species. Genetics 112: 649-667.
34. MÉRIDA, A., J. M. RODRÍGUEZ-GALÁN, C. VINCENT, AND J. M. ROMERO. 1999. Expression of the granule-bound starch synthase I (Waxy) gene from snapdragon is developmentally and circadian clock regulated. Plant Physiology 120: 401-409.
35. MILLER, J. C., AND S. D. TANKSLEY. 1990. RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon. Theoretical and Applied Genetics 80: 437-448.
36. MILLER, P. 1754. The gardeners dictionary, abridged 4th ed. London, UK.
37. MILLER, R. E., M. D. RAUSHER, AND P. S. MANOS. 1999. Phylogenetic systematics of lpomoea (Convolvulaceae) based on ITS and Waxy. Systematic Botany 24: 209-227.
38. MONIZ DE SÁ, M., AND G. DROUIN. 1996. Phytogeny and substitution rates of angiosperm actin genes. Molecular Biology and Evolution 13: 1198-1212.
39. MÜLLER, C. H. 1940. A revision of the genus Lycopersicon. United States Department of Agriculture, Miscellaneous Publication 382: 1-28.
40. OLMSTEAD, R. G., AND J. D. PALMER. 1997. Implications for phylogeny, classification, and biogeography of Solanum from cpDNA restriction site variation. Systematic Botany 22: 19-29.
41. OLMSTEAD, R. G., J. A. SWEERE, R. E. SPANGLER, L. BOHS, AND J. D. PALMER. 1999. Phylogeny and provisional classification of the Solanaceae based on chloroplast DNA. In M. Nee, D. E. Symon, R. N. Lester, and J. P. Jessop [eds.], Solanaceae IV, advances in biology and utilization, 111-137. Royal Botanic Gardens, Kew, UK.
42. PALMER, J. D., AND D. ZAMIR. 1982. Chloroplast DNA evolution and phylogenetic relationships in Lycopersicon. Proceedings of the National Academy of Sciences, USA 79: 5006-5010.
43. PERALTA, I. E. 2000. Phylogeny of wild tomatoes (Solanum L. section Lycopersicum [Mill.] Wettst. subsection Lycopersicum) based on morphology and waxy gene sequences. Ph.D. dissertation, Plant Breeding and Plant Genetics Program, University of Wisconsin, Madison, Wisconsin, USA.
44. PERALTA, I. E., AND D. M. SPOONER. 2000. Classification of wild tomatoes: a review. Kurtziana 28: 45-54.
45. RICK, C. M. 1960. Hybridization between Lycopersicon esculentum and Solanum pennellii: phylogenetic and cytogenetic significance. Proceedings of the National Academy of Sciences, USA 46: 78-82.
46. RICK, C. M. 1963. Barriers to interbreeding in Lycopersicon peruvianum. Evolution 17: 216-232.
47. RICK, C. M. 1971. Lycopersicon. In I. L. Wiggins and D. M. Porter [eds.], Flora of the Galapagos Islands, 468-471. Stanford University Press, Palo Alto, California, USA.
48. RICK, C. M. 1973. Potential genetic resources in tomato species: clues from observations in native habitats. In A. M. Srb [ed.], Genes, enzymes, and populations, 255-269. Plenum, New York, New York, USA.
49. RICK, C. M. 1979. Biosystematic studies in Lycopersicon and closely related species of Solanum. In J. G. Hawkes, R. N. Lester, and A. D. Skelding [eds.], The biology and taxonomy of Solanaceae. Linnean Society Symposium Series 7, 667-677. Academic Press, New York, New York, USA.
50. RICK, C. M. 1982. Genetic relationships between self-incompatibility and floral traits in the tomato species. Biologisches Zentralblatt 101: 185-198.
51. RICK, C. M. 1983. Tomato (Lycopersicon). In S. D. Tanksley and T. J. Orton [eds.], Isozymes in plant genetics and breeding part B, 147-165. Elsevier Science, Amsterdam, The Netherlands.
52. RICK, C. M. 1984. Evolution of mating systems: evidence from allozyme variation. In V. L. Chopra, B. C. Joshi, R. P. Sharma, and H. C. Bansal [eds.], Genetics: new frontiers. Proceedings of the XV International Congress of Genetics, vol. 4, Applied genetics, 215-221. Bowker, Epping, Essex, UK.
53. RICK, C. M. 1986. Reproductive isolation in the Lycopersicon peruvianum complex. In W. G. D'Arcy [ed.], Solanaceae, biology and systematics, 477-495. Columbia University Press, New York, New York, USA.
54. RICK, C. M. 1991. Tomato resources of South America reveal many genetic treasures. Diversity 7: 54-56.
55. RICK, C. M., AND J. F. FOBES. 1975a. Allozymes of Galapagos tomatoes: polymorphism, geographic distribution and affinities. Evolution 29: 443-457.
56. RICK, C. M., AND J. F. FOBES. 1975b. Allozyme variation in the cultivated tomato and closely related species. Bulletin of the Torres Botanical Club 102: 376-384.
57. RICK, C. M., J. F. FOBES, AND S. D. TANKSLEY. 1979. Evolution of mating systems in Lycopersicon hirsutum as deduced from genetic variation in electrophoretic and morphological characters. Plant Systematics and Evolution 132: 279-298.
58. RICK, C. M., AND M. HOLLE. 1990. Andean Lycopersicon esculentum var. cerasiforme: genetic variation and its evolutionary significance. Economic Botany 44: 69-78.
59. RICK, C. M., E. KESICKI, J. F. FOBES, AND M. HOLLE. 1976. Genetic and biosystematic studies on two new sibling species of Lycopersicon from Interandean Peru. Theoretical and Applied Genetics 47: 55-68.
60. RICK, C. M., H. LATERROT, AND J. PHILOUZE. 1990. A revised key for the Lycopersicon species. Tomato Genetics Cooperative Report 40: 31.
61. RICK, C. M., AND S. D. TANKSLEY. 1981. Genetic variation in Solanum pennelli: comparison with two other sympatric tomato species. Plant Systematics and Evolution 139: 11-45.
62. ROHDE, W., D. BECKER, AND F. SALAMINI. 1988. Structural analysis of the waxy locus from Hordeum vulgare. Nucleic Acids Research 16: 7185-7186.
63. RYCHLIK, W. 1998. Oligo® primer analysis software, ver. 6 for Macintosh. Molecular Biology Insights, Cascade, Colorado, USA.
64. SALEHUZZAMAN, S. N. I. M., E. JACOBSEN, AND R. G. F. VISSER. 1993. Isolation and characterization of a cDNA encoding granule-bound starch synthase in cassava (Manihot esculenta Crantz) and its antisense expression in potato. Plant Molecular Biology 23: 947-962.
65. SEITHE, A. 1962. Die Haararten der Gatung Solanum L. und ihre taxonomische Verwertung. Botanische Jahrbücher für Systematik, Pflanzengeshichte und Pflanzengeographie 81: 261-336.
66. SHIMADA, H., AND Y. TADA. 1991. Rapid isolation of a rice waxy sequence: a simple PCR method for the analysis of recombinant plasmids from intact Escherichia coli cells. Gene 98: 243-248.
67. SHURE, M., S. WESSLER, AND N. FEDOROFF. 1983. Molecular identification and isolation of the Waxy locus in maize. Cell 35: 225-233.
68. SMULDERS, M. J. M., G. BREDEMEIJER, W. RUS-KORTEKAAS, P. ARENS, AND B. VOSMAN. 1997. Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicun esculentum cultivars and accessions of other Lycopersicum species. Theoretical and Applied Genetics 97: 264-272.
69. SOLTIS, D. E., AND P. S. SOLTIS. 1998. Choosing an approach and an appropriate gene for phylogenetic analysis. In D. E. Soltis, P. S. Soltis, and J. J. Doyle [eds.], Molecular systematics of plants, II: DNA sequencing, 1-42. Kluwer Academic, Dordrecht, The Netherlands.
70. SPOONER, D. M., G. J. ANDERSON, AND R. K. JANSEN. 1993. Chloroplast DNA evidence for the interrelationships of tomatoes, potatoes, and pepinos (Solanaceae). American Journal of Botany 80: 676-688.
71. SWOFFORD, D. L. 1998. Paup*: phylogenetic analysis using parsimony, version 4. 0d64. Sinauer, Sunderland, Massachusetts, USA.
72. SYTSMA, K. J. 1990. DNA and morphology: inference of plant phylogeny. Trends in Ecology and Evolution 5: 104-110.
73. TANKSLEY, S. D., AND F. LOAIZA-FIGUEROA. 1985. Gametophytic self-incompatibility is controlled by a single major locus on chromosome 1 in Lycopersicon peruvianum. Proceedings of the National Academy of Sciences, USA 82: 5093-5096.
74. TAYLOR, I. B. 1986. Biosystematics of the tomato. In J. G. Atherton, and J. Rudich [eds.], The tomato crop: a scientific basis for improvement, 1-34. Chapman and Hall, London, UK.
75. VAN DER LEIJ, F. R., R. G. F. VISSER, A. S. PONSTEIN, E. JACOBSEN, AND W. J. FEENSTRA. 1991. Sequence of the structural gene for granule-bound starch synthase of potato (Solanum tuberosum L.) and evidence for a single point deletion in the amf allele. Molecular Gene Genetics 228: 240-248.
76. WANG, S. J., K. W. YEH, AND C. Y. TSAI. 1999. Molecular characterization and expression of starch granule-bound starch synthase in the sink and source tissues of sweet potato. Physiologia Plantarum 106: 253-261.
77. WANG, Z., Z. WU, Y. XING, F. ZHENG, X. GUO, W. ZANG, AND M. HONG. 1990. Nucleotide sequence of rice waxy gene. Nucleic Acids Research 18: 5898.
78. WHITSON, M. K., AND P. MANOS. 1999. Phylogenetic utility of sequence data from two regions of nuclear DNA in clarifying sectional relationships within Physalis. Abstracts. XVI International Botanical Congress, Saint Louis, Missouri, USA.
79. WOLFGANG, S., AND C. H. LANGLEY. 1998. DNA polymorphism in Lycopersicon and crossing-over per physical length. Genetics 150: 1585-1593.