-
1
-
-
79953078104
-
Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis
-
ASHELFORD, K., M. E. ERIKSSON, C. M. ALLEN, R. D' AMORE, M. JOHANSSON, P. GOULD, S. KAY, et al. 2011. Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis. Genome Biology 12: R28.
-
(2011)
Genome Biology
, vol.12
-
-
Ashelford, K.1
Eriksson, M.E.2
Allen, C.M.3
D'amore, R.4
Johansson, M.5
Gould, P.6
Kay, S.7
-
2
-
-
84863393432
-
Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results for the identification of SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome
-
AZAM, S., V. THAKUR, P. RUPERAO, T. SHAH, J. BALAJI, B. AMINDALA, A. D. FARMER, et al. 2012. Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results for the identification of SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. American Journal of Botany 99: 186-192.
-
(2012)
American Journal of Botany
, vol.99
, pp. 186-192
-
-
Azam, S.1
Thakur, V.2
Ruperao, P.3
Shah, T.4
Balaji, J.5
Amindala, B.6
Farmer, A.D.7
-
3
-
-
48249099869
-
-
US Patent 7,057,026. U. S. Patent and Trademarks Office, Department of Commerce, Washington, D.C., USA
-
BARNES, C., S. BALASUBRAMANIAN, X. LIU, H. SWERDLOW, and J. MILTON. 2002. Labelled nucleotides. US Patent 7,057,026. U. S. Patent and Trademarks Office, Department of Commerce, Washington, D.C., USA.
-
(2002)
Labelled Nucleotides
-
-
Barnes, C.1
Balasubramanian, S.2
Liu, X.3
Swerdlow, H.4
Milton, J.5
-
4
-
-
60149112578
-
Bioinformatics for next generation sequencing
-
(Oxford, England)
-
BATEMAN, A., and J. Quackenbush. 2009. Bioinformatics for next generation sequencing. Bioinformatics (Oxford, England) 25: 429.
-
(2009)
Bioinformatics
, vol.25
, pp. 429
-
-
Bateman, A.1
Quackenbush, J.2
-
5
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
BENTLEY, D. R., S. BALASUBRAMANIAN, H. P. SWERDLOW, G. P. SMITH, J. MILTON, C. G. BROWN, K. P. HALL, et al. 2008. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456: 53-59.
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
Balasubramanian, S.2
Swerdlow, H.P.3
Smith, G.P.4
Milton, J.5
Brown, C.G.6
Hall, K.P.7
-
6
-
-
84858592204
-
Nextgeneration sequencing applications for wheat crop improvement
-
BERKMAN, P. J., K. LAI, M. T. LORENC, and D. EDWARDS. 2012. Nextgeneration sequencing applications for wheat crop improvement. American Journal of Botany 99: 365-371.
-
(2012)
American Journal of Botany
, vol.99
, pp. 365-371
-
-
Berkman, P.J.1
Lai, K.2
Lorenc, M.T.3
Edwards, D.4
-
7
-
-
75949108066
-
Galaxy: A webbased genome analysis tool for experimentalists
-
Unit 19.10
-
BLANKENBERG, D., G. VON KUSTER, N. CORAOR, G. ANANDA, R. LAZARUS, M. MANGAN, A. NEKRUTENKO, and J. TAYLOR. 2010. Galaxy: A webbased genome analysis tool for experimentalists. Current Protocols in Molecular Biology 19: Unit 19.10.1-21.
-
(2010)
Current Protocols in Molecular Biology
, vol.19
, pp. 1-21
-
-
Blankenberg, D.1
von Kuster, G.2
Coraor, N.3
Ananda, G.4
Lazarus, R.5
Mangan, M.6
Nekrutenko, A.7
-
8
-
-
68349095077
-
Virtual terminator nucleotides for next-generation DNA sequencing
-
BOWERS, J., J. MITCHELL, E. BEER, P. R. BUZBY, M. CAUSEY, J. W. EFCAVITCH, M. JAROSZ, et al. 2009. Virtual terminator nucleotides for next-generation DNA sequencing. Nature Methods 6: 593-595.
-
(2009)
Nature Methods
, vol.6
, pp. 593-595
-
-
Bowers, J.1
Mitchell, J.2
Beer, E.3
Buzby, P.R.4
Causey, M.5
Efcavitch, J.W.6
Jarosz, M.7
-
9
-
-
53649108801
-
The potential and challenges of nanopore sequencing
-
BRANTON, D., D. W. DEAMER, A. MARZIALI, H. BAYLEY, S. A. BENNER, T. BUTLER, M. DI VENTRA, et al. 2008. The potential and challenges of nanopore sequencing. Nature Biotechnology 26: 1146-1153.
-
(2008)
Nature Biotechnology
, vol.26
, pp. 1146-1153
-
-
Branton, D.1
Deamer, D.W.2
Marziali, A.3
Bayley, H.4
Benner, S.A.5
Butler, T.6
di Ventra, M.7
-
10
-
-
84858611729
-
Nextgeneration sequencing and genome evolution in allopolyploids
-
BUGGS, R. J. A., S. Renny-Byfield, M. CHESTER, I. E. Jordon-Thaden, L. F. VICCINI, S. CHAMALA, A. R. LEITCH, et al. 2012. Nextgeneration sequencing and genome evolution in allopolyploids. American Journal of Botany 99: 372-382.
-
(2012)
American Journal of Botany
, vol.99
, pp. 372-382
-
-
Buggs, R.J.A.1
Renny-Byfield, S.2
Chester, M.3
Jordon-Thaden, I.E.4
Viccini, L.F.5
Chamala, S.6
Leitch, A.R.7
-
11
-
-
64449088698
-
Continuous base identification for single-molecule nanopore DNA sequencing
-
CLARKE, J., H.-C. WU, L. JAYASINGHE, A. PATEL, S. REID, and H. BAYLEY. 2009. Continuous base identification for single-molecule nanopore DNA sequencing. Nature Nanotechnology 4: 265-270.
-
(2009)
Nature Nanotechnology
, vol.4
, pp. 265-270
-
-
Clarke, J.1
Wu, H.-C.2
Jayasinghe, L.3
Patel, A.4
Reid, S.5
Bayley, H.6
-
12
-
-
84858596201
-
Targeted enrichment strategies for next generation plant biology
-
CRONN, R., B. KNAUS, A. LISTON, P. J. MAUGHAN, M. PARKS, J. SYRING, and J. UDALL. 2012. Targeted enrichment strategies for next generation plant biology. American Journal of Botany 99: 291-311.
-
(2012)
American Journal of Botany
, vol.99
, pp. 291-311
-
-
Cronn, R.1
Knaus, B.2
Liston, A.3
Maughan, P.J.4
Parks, M.5
Syring, J.6
Udall, J.7
-
13
-
-
77952425335
-
Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery
-
DESCHAMPS, S., and M. A. CAMPBELL. 2010. Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery. Molecular Breeding 25: 553-570.
-
(2010)
Molecular Breeding
, vol.25
, pp. 553-570
-
-
Deschamps, S.1
Campbell, M.A.2
-
14
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
EID, J., A. FEHR, J. GRAY, K. LUONG, J. LYLE, G. OTTO, P. PELUSO, et al. 2009. Real-time DNA sequencing from single polymerase molecules. Science 323: 133-138.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
Otto, G.6
Peluso, P.7
-
16
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
GENTLEMAN, R. C., V. J. CAREY, D. M. BATES, B. BOLSTAD, M. DETTLING, S. DUDOIT, B. ELLIS, et al. 2004. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biology 5: R80.
-
(2004)
Genome Biology
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
-
17
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
GIARDINE, B., C. RIEMER, R. C. HARDISON, R. BURHANS, L. ELNITSKI, P. SHAH, Y. ZHANG, et al. 2005. Galaxy: A platform for interactive large-scale genome analysis. Genome Research 15: 1451-1455.
-
(2005)
Genome Research
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, Y.6
Zhang, P.7
-
18
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Team The Galaxy
-
GOECKS, J., A. NEKRUTENKO, and J. TAYLOR, and The Galaxy Team. 2010. Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology 11: R86.
-
(2010)
Genome Biology
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
19
-
-
84858593012
-
The iPlant collaborative: Cyberinfrastructure for plant biology
-
GOFF, S. A., M. VAUGHN, S. MCKAY, E. LYONS, A. E. STAPLETON, D. GESSLER, N. MATASCI, et al. 2011. The iPlant collaborative: Cyberinfrastructure for plant biology. Frontiers in Plant Science 2: 34.
-
(2011)
Frontiers in Plant Science
, vol.2
, pp. 34
-
-
Goff, S.A.1
Vaughn, M.2
McKay, S.3
Lyons, E.4
Stapleton, A.E.5
Gessler, D.6
Matasci, N.7
-
20
-
-
84858591099
-
Targeted sequence capture as a powerful tool for evolutionary analysis
-
GROVER, C. E., A. SALMON, and J. F. WENDEL. 2012. Targeted sequence capture as a powerful tool for evolutionary analysis. American Journal of Botany 99: 312-319.
-
(2012)
American Journal of Botany
, vol.99
, pp. 312-319
-
-
Grover, C.E.1
Salmon, A.2
Wendel, J.F.3
-
21
-
-
84858592281
-
Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a
-
GULLEDGE, A. A., A. D. ROBERTS, H. VORA, K. PATEL, and A. E. LORAINE. 2012. Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a. American Journal of Botany 99: 219-231.
-
(2012)
American Journal of Botany
, vol.99
, pp. 219-231
-
-
Gulledge, A.A.1
Roberts, A.D.2
Vora, H.3
Patel, K.4
Loraine, A.E.5
-
22
-
-
48249132489
-
Four-color DNA sequencing with 3 ′ -O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides
-
GUO, J., N. XU, Z. LI, S. ZHANG, J. WU, D. H. KIM, M. S. MARMA, et al. 2008. Four-color DNA sequencing with 3 ′ -O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides. Proceedings of the National Academy of Sciences, USA 105: 9145-9150.
-
(2008)
Proceedings of the National Academy of Sciences, USA
, vol.105
, pp. 9145-9150
-
-
Guo, J.1
Xu, N.2
Li, Z.3
Zhang, S.4
Wu, J.5
Kim, D.H.6
Marma, M.S.7
-
23
-
-
84889363175
-
Real-time DNA sequencing
-
M. Janitz [ed], Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany
-
HARDIN, S. H. 2008. Real-time DNA sequencing. In M. Janitz [ed.], Next generation genome sequencing: Towards personalized medicine, 97-102. Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany.
-
(2008)
Next Generation Genome Sequencing: Towards Personalized Medicine
, pp. 7-102
-
-
Hardin, S.H.1
-
24
-
-
41749104588
-
Single-molecule DNA sequencing of a viral genome
-
HARRIS, T. D., P. R. BUZBY, H. BABCOCK, E. BEER, J. BOWERS, I. BRASLAVSKY, M. CAUSEY, et al. 2008. Single-molecule DNA sequencing of a viral genome. Science 320: 106-109.
-
(2008)
Science
, vol.320
, pp. 106-109
-
-
Harris, T.D.1
Buzby, P.R.2
Babcock, H.3
Beer, E.4
Bowers, J.5
Braslavsky, I.6
Causey, M.7
-
25
-
-
84863338285
-
Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity
-
HE, R., M.-J. KIM, W. NELSON, T. S. BALBUENA, R. KIM, R. KRAMER, J. A. CROW, et al. 2012. Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity. American Journal of Botany 99: 232-247.
-
(2012)
American Journal of Botany
, vol.99
, pp. 232-247
-
-
He, R.1
Kim, M.-J.2
Nelson, W.3
Balbuena, T.S.4
Kim, R.5
Kramer, R.6
Crow, J.A.7
-
26
-
-
77950941484
-
Bioinformatics approaches for genomics and post genomics applications of nextgeneration sequencing
-
HORNER, D. S., G. PAVESI, T. CASTRIGNANO, P. D'onorio DE MEO, S. LIUNI, M. SAMMETH, E. PICARDI, and G. PESOLE. 2009. Bioinformatics approaches for genomics and post genomics applications of nextgeneration sequencing. Briefings in Bioinformatics 11: 181-197.
-
(2009)
BriefiNgs in Bioinformatics
, vol.11
, pp. 181-197
-
-
Horner, D.S.1
Pavesi, G.2
Castrignano, T.3
de D'onorio, M.P.4
Liuni, S.5
Sammeth, M.6
Picardi, E.7
Pesole, G.8
-
27
-
-
81755177765
-
Evolution of multidrug resistance during Staphylococcus aureus infection involves mutation of the essential two component regulator WalKR
-
HOWDEN, D. P., C. R. E. MCEVOY, D. L. ALLEN, K. CHUA, W. GAO, P. F. HARRISON, J. BELL, et al. 2011. Evolution of multidrug resistance during Staphylococcus aureus infection involves mutation of the essential two component regulator WalKR. PLoS Pathogens 7: e1002359.
-
(2011)
PLoS Pathogens
, vol.7
-
-
Howden, D.P.1
McEvoy, C.R.E.2
Allen, D.L.3
Chua, K.4
Gao, W.5
Harrison, P.F.6
Bell, J.7
-
28
-
-
0034930381
-
Sequence-specific detection of individual DNA strands using engineered nanopores
-
HOWORKA, S., S. CHELEY, and H. BAYLEY. 2001. Sequence-specific detection of individual DNA strands using engineered nanopores. Nature Biotechnology 19: 636-639.
-
(2001)
Nature Biotechnology
, vol.19
, pp. 636-639
-
-
Howorka, S.1
Cheley, S.2
Bayley, H.3
-
29
-
-
84858609372
-
A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species
-
ILUT, D. C., J. E. COATE, A. K. LUCIANO, T. G. OWENS, G. D. MAY, A. FARMER, and J. J. DOYLE. 2012. A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species. American Journal of Botany 99: 383-396.
-
(2012)
American Journal of Botany
, vol.99
, pp. 383-396
-
-
Ilut, D.C.1
Coate, J.E.2
Luciano, A.K.3
Owens, T.G.4
May, G.D.5
Farmer, A.6
Doyle, J.J.7
-
30
-
-
84863338497
-
Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA
-
KANE, N., S. SVEINSSON, H. D EMPEWOLF, J. Y. Y ANG, D. Z HANG, J. M. M. ENGELS, and Q. CRONK. 2012. Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA. American Journal of Botany 99: 320-329.
-
(2012)
American Journal of Botany
, vol.99
, pp. 320-329
-
-
Kane, N.1
Sveinsson, S.2
Empewolf, H.D.3
Ang, J.Y.Y.4
Hang, D.Z.5
Engels, J.M.M.6
Cronk, Q.7
-
31
-
-
84858606519
-
A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data
-
KVAM, V. M., P. LIU, AND Y. SI. 2012. A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data. American Journal of Botany 99: 248-256.
-
(2012)
American Journal of Botany
, vol.99
, pp. 248-256
-
-
Kvam, V.M.1
Liu, P.2
Si, Y.3
-
32
-
-
84863338264
-
Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
-
LAI, Z., N. C. KANE, A. KOZIK, K. A. HODGINS, K. M. DLUGOSCH, M. S. BARKER, M. MATVIENKO, et al. 2012. Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. American Journal of Botany 99: 209-218.
-
(2012)
American Journal of Botany
, vol.99
, pp. 209-218
-
-
Lai, Z.1
Kane, N.C.2
Kozik, A.3
Hodgins, K.A.4
Dlugosch, K.M.5
Barker, M.S.6
Matvienko, M.7
-
33
-
-
0024297824
-
A ligase-mediated gene detection technique
-
LANDEGREN, U., R. KAISER, J. SANDERS, and L. HOOD. 1988. A ligase-mediated gene detection technique. Science 241: 1077-1080.
-
(1988)
Science
, vol.241
, pp. 1077-1080
-
-
Landegren, U.1
Kaiser, R.2
Sanders, J.3
Hood, L.4
-
34
-
-
0037474152
-
Zero-mode waveguides for single-molecule analysis at high concentration
-
LEVENE, M. J., J. KORLACH, S. W. TURNER, M. FOQUET, H. G. CRAIGHEAD, and W. W. WEBB. 2003. Zero-mode waveguides for single-molecule analysis at high concentration. Science 299: 682-686.
-
(2003)
Science
, vol.299
, pp. 682-686
-
-
Levene, M.J.1
Korlach, J.2
Turner, S.W.3
Foquet, M.4
Craighead, H.G.5
Webb, W.W.6
-
35
-
-
78650280872
-
Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase
-
LIEBERMAN, K. R., G. M. CHERF, M. J. DOODY, F. OLASAGASTI, Y. KOLODJI, and M. AKESON. 2010. Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase. Journal of the American Chemical Society 132: 17961-17972.
-
(2010)
Journal of The American Chemical Society
, vol.132
, pp. 17961-17972
-
-
Lieberman, K.R.1
Cherf, G.M.2
Doody, M.J.3
Olasagasti, F.4
Kolodji, Y.5
Akeson, M.6
-
36
-
-
77449121614
-
Target-enrichment strategies for next generation sequencing
-
MAMANOVA, L., A. J. COFFEY, C. E. SCOTT, I. KOZAREWA, E. H. TURNER, A. KUMAR, E. HOWARD, et al. 2010. Target-enrichment strategies for next generation sequencing. Nature Methods 7: 111-118.
-
(2010)
Nature Methods
, vol.7
, pp. 111-118
-
-
Mamanova, L.1
Coffey, A.J.2
Scott, C.E.3
Kozarewa, I.4
Turner, E.H.5
Kumar, A.6
Howard, E.7
-
37
-
-
84863337902
-
Genomics of gene banks: A case study in rice
-
MCCOUCH, S. R., K. L. MCNALLY, W. WANG, and R. S. HAMILTON. 2012. Genomics of gene banks: A case study in rice. American Journal of Botany 99: 407-423.
-
(2012)
American Journal of Botany
, vol.99
, pp. 407-423
-
-
McCouch, S.R.1
McNally, K.L.2
Wang, W.3
Hamilton, R.S.4
-
38
-
-
84863337847
-
Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae)
-
MCKAIN, M. R., N. W ICKETT, Y. ZHANG, S. A YYAMPALAYAM, W. R. MCCOMBIE, M. W. CHASE, J. C. PIRES, et al. 2012. Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). American Journal of Botany 99: 397-406.
-
(2012)
American Journal of Botany
, vol.99
, pp. 397-406
-
-
McKain, M.R.1
Ickett, N.W.2
Zhang, Y.3
Yyampalayam, S.A.4
McCombie, W.R.5
Chase, M.W.6
Pires, J.C.7
-
39
-
-
46449096514
-
-
US Patent application 11/345,979. U. S. Patent and Trademarks Office, Department of Commerce, Washington, D.C., USA
-
MCKERNAN, K., A. BLANCHARD, L. KOTLER, and G. COSTA. 2005. Reagents, methods, and libraries for bead-based sequencing. US Patent application 11/345,979. U. S. Patent and Trademarks Office, Department of Commerce, Washington, D.C., USA.
-
(2005)
Reagents, Methods, and Libraries For Bead-based Sequencing
-
-
McKernan, K.1
Blanchard, A.2
Kotler, L.3
Costa, G.4
-
40
-
-
72849144434
-
Sequencing technologies - The next generation
-
METZKER, M. L. 2010. Sequencing technologies - The next generation. Nature Reviews Genetics 11: 31-46.
-
(2010)
Nature Reviews Genetics
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
41
-
-
77952886150
-
Assembly algorithms for next-generation sequencing data
-
MILLER, J. R., S. KOREN, and G. SUTTON. 2010. Assembly algorithms for next-generation sequencing data. Genomics 95: 315-327.
-
(2010)
Genomics
, vol.95
, pp. 315-327
-
-
Miller, J.R.1
Koren, S.2
Sutton, G.3
-
42
-
-
80054903230
-
Review of massively parallel DNA sequencing technologies
-
MOORTHIE, S., C. J. MATTOCKS, and C. F. WRIGHT. 2011. Review of massively parallel DNA sequencing technologies. HUGO Journal 5: 1-12.
-
(2011)
HUGO Journal
, vol.5
, pp. 1-12
-
-
Moorthie, S.1
Mattocks, C.J.2
Wright, C.F.3
-
43
-
-
84955152565
-
Overview of sequencing technology platforms
-
N. Rodriguez-Ezpeleta, M. Hackenberg, and A. M. Aransayet [eds., Springer-Verlag, New York, New York, USA
-
MYLLYKANGAS, S., J. BUENROSTRO, and H. P. JI. 2011. Overview of sequencing technology platforms. In N. Rodriguez-Ezpeleta, M. Hackenberg, and A. M. Aransayet [eds.], Bioinformatics for high throughput sequencing, 11-26. Springer-Verlag, New York, New York, USA.
-
(2011)
Bioinformatics for High Throughput Sequencing
, pp. 11-26
-
-
Myllykangas, S.1
Buenrostro, J.2
Ji, H.P.3
-
44
-
-
39049195998
-
The history of pyrosequencing
-
(Clifton, N.J.)
-
Nyré N, P. 2007. The history of pyrosequencing. Methods in Molecular Biology (Clifton, N.J.) 373: 1-14.
-
(2007)
Methods in Molecular Biology
, vol.373
, pp. 1-14
-
-
Nyré, N.P.1
-
45
-
-
80053495571
-
True single-molecule DNA sequencing of a Pleistocene horse bone
-
ORLANDO, L., A. GINOLHAC, M. RAGHAVAN, J. VILSTRUP, M. RASMUSSEN, K. MAGNUSSEN, K. STEINMANN, et al. 2011. True single-molecule DNA sequencing of a Pleistocene horse bone. Genome Research 21: 1705-1719.
-
(2011)
Genome Research
, vol.21
, pp. 1705-1719
-
-
Orlando, L.1
Ginolhac, A.2
Raghavan, M.3
Vilstrup, J.4
Rasmussen, M.5
Magnussen, K.6
Steinmann, K.7
-
46
-
-
70349956497
-
Direct RNA sequencing
-
OZSOLAK, F., A. R. PLATT, D. R. JONES, J. G. REIFENBERGER, L. E. SASS, P. MCINERNEY, J. F. THOMPSON, et al. 2009. Direct RNA sequencing. Nature 461: 814-818.
-
(2009)
Nature
, vol.461
, pp. 814-818
-
-
Ozsolak, F.1
Platt, A.R.2
Jones, D.R.3
Reifenberger, J.G.4
Sass, L.E.5
McInerney, P.6
Thompson, J.F.7
-
48
-
-
77749264604
-
Semiconductors inspire new sequencing technologies
-
PENNISI, E. 2010. Semiconductors inspire new sequencing technologies. Science 327: 1190.
-
(2010)
Science
, pp. 327
-
-
Pennisi, E.1
-
49
-
-
84863304598
-
R: A language and environment for statistical computing
-
R DEVELOPMENT CORE TEAM, Vienna, Austria
-
R DEVELOPMENT CORE TEAM. 2010. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2010)
R Foundation for Statistical Computing
-
-
-
50
-
-
0032540905
-
A sequencing method based on real-time pyrophosphate
-
RONAGHI, M., M. Uhlén, and P. Nyrén. 1998. A sequencing method based on real-time pyrophosphate. Science 281: 363-365.
-
(1998)
Science
, vol.281
, pp. 363-365
-
-
Ronaghi, M.1
Uhlén, M.2
Nyrén, P.3
-
51
-
-
79960597679
-
An integrated semiconductor device enabling non-optical genome sequencing
-
ROTHBERG, J. M., W. HINZ, T. M. REARICK, J. SCHULTZ, W. MILESKI, M. DAVEY, J. H. LEAMON, et al. 2011. An integrated semiconductor device enabling non-optical genome sequencing. Nature 475: 348-352.
-
(2011)
Nature
, vol.475
, pp. 348-352
-
-
Rothberg, J.M.1
Hinz, W.2
Rearick, T.M.3
Schultz, J.4
Mileski, W.5
Davey, M.6
Leamon, J.H.7
-
52
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
SANGER, F., S. NICKLEN, and A. R. COULSON. 1977. DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74: 5463-5467.
-
(1977)
Proceedings of the National Academy of Sciences, USA
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
53
-
-
24644462173
-
Accurate multiplex polony sequencing of an evolved bacterial genome
-
SHENDURE, J., G. J. PORRECA, N. B. REPPAS, X. LIN, J. P. MCCUTCHEON, A. M. ROSENBAUM, M. D. WANG, et al. 2005. Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309: 1728-1732.
-
(2005)
Science
, vol.309
, pp. 1728-1732
-
-
Shendure, J.1
Porreca, G.J.2
Reppas, N.B.3
Lin, X.4
McCutcheon, J.P.5
Rosenbaum, A.M.6
Wang, M.D.7
-
54
-
-
79251636555
-
The genome of woodland strawberry (Fragaria vesca)
-
SHULAEV, V., D. J. SARGENT, R. N. CROWHURST, T. C. MOCKLER, O. FOLKERTS, A. L. D ELCHER, P. JAISWAL, et al. 2011. The genome of woodland strawberry (Fragaria vesca). Nature Genetics 43: 109-116.
-
(2011)
Nature Genetics
, vol.43
, pp. 109-116
-
-
Shulaev, V.1
Sargent, D.J.2
Crowhurst, R.N.3
Mockler, T.C.4
Folkerts, O.5
Elcher, A.L.D.6
Jaiswal, P.7
-
55
-
-
84858591050
-
Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae
-
STEELE, P. R., K. L. HERTWECK, D. MAYFIELD, M. R. MCKAIN, J. H. Leebens-Mack, and J. C. PIRES. 2012. Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae. American Journal of Botany 99: 330-348.
-
(2012)
American Journal of Botany
, vol.99
, pp. 330-348
-
-
Steele, P.R.1
Hertweck, K.L.2
Mayfield, D.3
McKain, M.R.4
Leebens-Mack, J.H.5
Pires, J.C.6
-
56
-
-
84858608318
-
Designing a transcriptome next-generation sequencing project for a nonmodel plant species
-
STRICKLER, S. R., A. BOMBARELY, and L. A. MUELLER. 2012. Designing a transcriptome next-generation sequencing project for a nonmodel plant species. American Journal of Botany 99: 257-266.
-
(2012)
American Journal of Botany
, vol.99
, pp. 257-266
-
-
Strickler, S.R.1
Bombarely, A.2
Mueller, L.A.3
-
57
-
-
84858588968
-
N avigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics
-
STRAUB, S. C. K., M. P ARKS, K. W EITEMIER, M. F ISHBEIN, R. C. CRONN, and A. L ISTON. 2012. N avigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics. American Journal of Botany 99: 349-364.
-
(2012)
American Journal of Botany
, vol.99
, pp. 349-364
-
-
Straub, S.C.K.1
Parks, M.2
Eitemier, K.W.3
Ishbein, M.F.4
Cronn, R.C.5
Iston, A.L.6
-
58
-
-
79951874992
-
The properties and applications of single-molecule DNA sequencing
-
THOMPSON, J. F., and P. M. MILOS. 2011. The properties and applications of single-molecule DNA sequencing. Genome Biology 12: 217.
-
(2011)
Genome Biology
, vol.12
, pp. 217
-
-
Thompson, J.F.1
Milos, P.M.2
-
60
-
-
84858593713
-
Strategies for transcriptome analysis in nonmodel plants
-
WARD, J. A., L. PONNALA, and C. A. WEBER. 2012. Strategies for transcriptome analysis in nonmodel plants. American Journal of Botany 99: 267-276.
-
(2012)
American Journal of Botany
, vol.99
, pp. 267-276
-
-
Ward, J.A.1
Ponnala, L.2
Weber, C.A.3
-
61
-
-
84858607727
-
Genome-wide mapping of transcription factor binding reveals developmental process integration and a fresh look at evolutionary dynamics
-
YANT, Y. 2012. Genome-wide mapping of transcription factor binding reveals developmental process integration and a fresh look at evolutionary dynamics. American Journal of Botany 99: 277-290.
-
(2012)
American Journal of Botany
, vol.99
, pp. 277-290
-
-
Yant, Y.1
-
62
-
-
84863393816
-
Using next-generation sequencing approaches for the isolation of simple sequence repeat (SSR) loci in the plant sciences
-
ZALAPA, J. E., H. CUEVAS, H. ZHU, S. STEFFAN, D. SENALIK, E. ZELDIN, B. MCCOWN, et al. 2012. Using next-generation sequencing approaches for the isolation of simple sequence repeat (SSR) loci in the plant sciences. American Journal of Botany 99: 193-208.
-
(2012)
American Journal of Botany
, vol.99
, pp. 193-208
-
-
Zalapa, J.E.1
Cuevas, H.2
Zhu, H.3
Steffan, S.4
Senalik, D.5
Zeldin, E.6
McCown, B.7
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