Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)

Molecular Biology and Evolution

Volumn 17, Issue 10, 2000, Pages 1483-1498

  Koch, Marcus A ^a,b   Haubold, Bernhard ^a   Mitchell Olds, Thomas ^a  

^a MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY   (Germany)

^b UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

Author keywords

Adh; Arabidopsis; Arabis; Chs; Divergence time; Phylogeny

Indexed keywords

ALCOHOL DEHYDROGENASE; CHALCONE SYNTHASE;

ARABIDOPSIS; ARTICLE; EVOLUTION; FOSSIL; GENE SEQUENCE; GENETIC VARIABILITY; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES DIFFERENCE; TAXONOMY;

ARABIDOPSIS; ARABIDOPSIS HALLERI; ARABIDOPSIS LYRATA; ARABIDOPSIS LYRATA SUBSP. PETRAEA; ARABIDOPSIS THALIANA; ARABIS; BOECHERA; BRASSICA; BRASSICACEAE; EMBRYOPHYTA;

EID: 0033804889     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026248     Document Type: Article

References (67)

1. Generic placement of species excluded from Arabidopsis (Brassicaceae)
2. Structure and organization of the genes encoding chalcone synthase in Pisum sativum
3. The small, the large and the wild: The value of comparison in plant genomics
4. Expression of chalcone synthase and chalcone isomerase proteins in Arabidopsis seedlings
5. Collinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome
6. The evolution of the alcohol dehydrogenase gene family by loss of introns in plants of the genus Leavenworthia (Brassicaceae)
7. The evolution of plant nuclear genes
8. Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila
9. Phylogenetic relationships of Dipsacales based on rbcL sequences
10. Evolution of the chalcone synthase gene family in the genus Ipomoea
11. PcMYB1, a novel plant protein containing a DNA-binding domain with one MYB repeat, interacts in vivo with a light-regulatory promoter unit
12. Molecular systematics of Cardamine and allied genera (Brassicaceae): ITS and noncoding chloroplast DNA
13. Phylogenetic utility of the nuclear gene arginine decarboxylase: An example from Brassicaceae
14. Molecular evolution of alcohol dehydrogenase 1 in members of the grass family
15. Substitution rate comparisons between grasses and palms: Synonymous rate Differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL
16. CLUSTAL V: Improved software for multiple sequence alignment
17. Speciation and domestication in maize and its wild relatives - Evidence from the Globulin-1 gene
18. Nucleotide sequence of additional members of the gene family encoding chalcone synthase in Trifolium subterraneum
19. Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana
20. Stress response in alfalfa (Medicago sativa L.) 15. Characterization and expression patterns of members of a subset of the chalcone synthase multigene family
21. Genetic basis of inbreeding depression in Arabis petraea
22. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
23. Molecular systematics and evolution of Arabidopsis and Arabis
24. Molecular systematics of the Brassicaceae: Evidence from coding plastidic matK and nuclear CHS sequences
25. Isozymes, speciation and evolution in the polyploid Cochlearia L. (Brassicaceae)
26. Cloning and molecular characterization of the chalcone synthase multigene family of Petunia hybrida
27. Unbiased estimation of the rates of synonymous and nonsynonymous substitution
28. Synonymous rates at the RpII215 gene of Drosophila: Variation among species and across the coding region
29. The detection of disease clustering and a generalized regression approach
30. The problem of Biscutella laevigata L. II. Evidence from meiosis
31. Analysing the mosaic structure of genes
32. Intra- and interspecific variation of the alcohol dehydrogenase locus region in wild plants Arabis gemmifera and Arabidopsis thaliana
33. Intra- and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species
34. Evolution of alcohol dehydrogenase genes in the palm and grass families
35. Chloroplast DNA restriction site variation and phylogenetic relationships in the genus Thlaspi sensu lato (Brassicaceae)
36. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
37. Systematic relationships of Arabidopsis: A molecular and morphological perspective
38. A monographic study of Arabis in western North America
39. Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris
40. Genetic and physical mapping in Brassica diploid species of a gene cluster defined in Arabidopsis thaliana
41. Estimating rate and time in molecular phylogenies: Beyond the molecular clock?
42. The paleontology of intergene retrotransposons of maize
43. Genetic control of multiple molecular forms of enzymes in plants: A review
44. Cruciferae
45. Starch gel electrophoresis of ferns: A compilation of grinding buffers, gel and electrode buffers, and staining schedules
46. Plant functional Genomics
47. Horizontal gene transfer: Evidence and possible consequences
48. Zur Cytotaxonomie yon Arabis hirsuta agg. (Cruciferae). V. Artifizielle und naturliche F1-Hybriden sowie deren Cytogenetik
49. Cytosystematic study of the Iberian taxa of the Arabis hirsuta group
50. Experimentelle Systematik und Genetik der kahlen Sippen in der Arabis hirsuta-Gruppe (Brassicaceae)
51. Molecular analysis of the alcohol dehydrogenase gene family of barley
52. Evolution of microsatellites in Arabis petraea and Arabis lyrata, outcrossing relatives of Arabidopsis thaliana
53. Molecular systematics of Brassica and allied genera (subtribe Brassicinae, Brassiceae) - Chloroplast genome and cytodeme congruence
54. Phylogenetic implications of chloroplast DNA restriction site variation in subtribe Raphaninae and Cakilinae (Brassicaceae, tribe Brassiceae)
55. Differential regulation of soybean chalcone synthase genes in plant defense, symbiosis and upon environmental stimuli
56. Rates of synonymous substitution in plant nuclear genes
57. Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages
58. Molecular phylogeny and evolutionary rates of alcohol dehydrogenases in vertebrates and plants
59. Phylogenetic relationships of Thlaspi s. l. (subtribe Thlaspidinae, Lepidieae) and allied genera based on chloroplast DNA restriction-site variation