Evolutionary biogeography of Manihot (Euphorbiaceae), a rapidly radiating Neotropical genus restricted to dry environments

Journal of Biogeography

Volumn 38, Issue 6, 2011, Pages 1033-1043

  Duputié, Anne ^a,c   Salick, Jan ^b   Mckey, Doyle ^a  

^a CENTRE D ECOLOGIE FONCTIONNELLE ET EVOLUTIVE   (France)

^b MISSOURI BOTANICAL GARDEN   (United States)

^c UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

Adaptive radiation; Biogeography; Cassava; Cerrado; Dispersal; Neotropics; Phylogeny; Regeneration; Seasonally dry environments; Seedling morphology

Indexed keywords

ADAPTIVE RADIATION; BIOGEOGRAPHY; CASSAVA; CERRADO; DISPERSAL; HUMID ENVIRONMENT; MORPHOLOGY; NEOTROPIC ECOZONE; PHYLOGENETICS; PHYLOGENY; REGENERATION; SEEDLING; WILD POPULATION;

BRAZIL; ISTHMUS OF PANAMA; PANAMA [CENTRAL AMERICA];

CNIDOSCOLUS URENS; EUPHORBIA; EUPHORBIACEAE; JATROPHA; JATROPHA GOSSYPIIFOLIA; MANIHOT; MANIHOT ESCULENTA;

EID: 79955845635     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2011.02474.x     Document Type: Article

References (69)

1. Allem, A.C. (1978) Notas taxonômicas e novos sinônimos em espécies de Manihot- II (Euphorbiaceae). Revista Brasileira de Biológia, 38, 721-726.
2. Allem, A.C. (1979) Notas taxonômicas e novos sinônimos em espécies de Manihot- V (Euphorbiaceae). Revista Brasileira de Biológia, 39, 891-896.
3. Allem, A.C. (1994) The origin of Manihot esculenta Crantz (Euphorbiaceae). Genetic Resources and Crop Evolution, 41, 133-150.
4. Allem, A.C. (1999a) A new species of Manihot (Euphorbiaceae) from the Brazilian Amazon. International Journal of Plant Sciences, 160, 181-187.
5. Allem, A.C. (1999b) The closest wild relatives of cassava (Manihot esculenta Crantz). Euphytica, 107, 123-133.
6. Allem, A.C., Mendes, R.A., Salomão, A.N. & Burle, M.L. (2001) The primary gene pool of cassava (Manihot esculenta Crantz subspecies esculenta, Euphorbiaceae). Euphytica, 120, 127-132.
7. Almeida, F.C., Bonvicino, C.R. & Cordeiro-Estrela, P. (2007) Phylogeny and temporal diversification of Calomys (Rodentia, Sigmodontinae): implications for the biogeography of an endemic genus of the open/dry biomes of South America. Molecular Phylogenetics and Evolution, 42, 449-466.
8. Anisimova, M. & Gascuel, O. (2006) Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Systematic Biology, 55, 539-552.
9. Bonaccorso, E., Koch, I. & Peterson, A.T. (2006) Pleistocene fragmentation of Amazon species' ranges. Diversity and Distributions, 12, 157-164.
10. Burnham, R.J. & Graham, A. (1999) The history of Neotropical vegetation: new developments and status. Annals of the Missouri Botanical Garden, 86, 546-589.
11. Bush, M.B. (1994) Amazonian speciation: a necessarily complex model. Journal of Biogeography, 21, 5-17.
12. Caetano, S., Prado, D., Pennington, R.T., Beck, S., Oliveira, A., Spichiger, R. & Naciri, Y. (2008) The history of seasonally dry tropical forests in eastern South America: inferences from the genetic structure of the tree Astronium urundeuva (Anacardiaceae). Molecular Ecology, 17, 3147-3159.
13. Chacón, J., Madriñán, S., Debouck, D., Rodriguez, F. & Tohme, J. (2008) Phylogenetic patterns in the genus Manihot (Euphorbiaceae) inferred from analyses of nuclear and chloroplast DNA regions. Molecular Phylogenetics and Evolution, 49, 260-267.
14. Clark, J.R., Ree, R.H., Alfaro, M.E., King, M.G., Wagner, W.L. & Roalson, E.H. (2008) A comparative study in ancestral range reconstruction methods: retracing the uncertain histories of insular lineages. Systematic Biology, 57, 693-707.
15. Coates, A.G. & Obando, J.A. (1996) The geologic evolution of the Central American isthmus. Evolution and environment in tropical America (ed. by J.B.C. Jackson, A.F. Budd and A.G. Coates ), pp. 21-56. University of Chicago Press, Chicago, IL.
16. Colinvaux, P.A., de Oliveira, P.E. & Bush, M.B. (2000) Amazonian and neotropical plant communities on glacial time-scales: the failure of the aridity and refuge hypotheses. Quaternary Science Reviews, 19, 141-169.
17. Duputié, A. (2008) From the radiation of Manihot within a diversity hotspot to the domestication of cassava. PhD Thesis, University Montpellier II, Montpellier, France.
18. Edgar, R.C. (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 113.
19. Elias, M. & McKey, D. (2000) The unmanaged reproductive ecology of domesticated plants in traditional agroecosystems: an example involving cassava and a call for data. Acta Oecologica, 21, 223-230.
20. Erkens, R.H.J., Chatrou, L.W., Maas, J.W., van der Niet, T. & Savolainen, V. (2007) A rapid diversification of rainforest trees (Guatteria; Annonaceae) following dispersal from Central into South America. Molecular Phylogenetics and Evolution, 44, 399-411.
21. FAOSTAT (2009) Agricultural production data. FAO, Rome, Italy.
22. Guindon, S. & Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
23. Haffer, J. & Prance, G.T. (2001) Climatic forcing of evolution in Amazonia during the Cenozoic: on the refuge theory of biotic differentiation. Amazoniana, 16, 579-605.
24. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
25. Howarth, D.G. & Baum, D.A. (2002) Phylogenetic utility of a nuclear intron from nitrate reductase for the study of closely related plant species. Molecular Phylogenetics and Evolution, 23, 525-528.
26. Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
27. Hughes, C. & Eastwood, R. (2006) Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes. Proceedings of the National Academy of Sciences USA, 103, 10334-10339.
28. Ireland, H.E., Kite, G.C., Veitch, N.C., Chase, M.W., Schrire, B., Lavin, M., Linares, J. & Pennington, R.T. (2010) Biogeographical, ecological and morphological structure in a phylogenetic analysis of Ateleia (Swartzieae, Fabaceae) derived from combined molecular, morphological and chemical data. Botanical Journal of the Linnean Society, 162, 39-53.
29. Kirby, M.X., Jones, D.S. & MacFadden, B.J. (2008) Lower Miocene stratigraphy along the Panama Canal and its bearing on the Central American peninsula. PLoS ONE, 3, e2791.
30. Kodandaramaiah, U. (2009) Use of dispersal-vicariance analysis in biogeography - a critique. Journal of Biogeography, 37, 3-11.
31. Leal, I.R., Wirth, R. & Tabarelli, M. (2007) Seed dispersal by ants in the semi-arid Caatinga of north-east Brazil. Annals of Botany, 99, 885-894.
32. Lefèvre, F. & Charrier, A. (1993) Isozyme diversity within African Manihot germplasm. Euphytica, 66, 73-80.
33. Léotard, G., Duputié, A., Kjellberg, F., Douzery, E.J.P., Debain, C., de Granville, J.J. & McKey, D. (2009) Phylogeography and the origin of cassava: new insights from the northern rim of the Amazon basin. Molecular Phylogenetics and Evolution, 53, 329-334.
34. MacFadden, B.J. (2006) Extinct mammalian biodiversity of the ancient New World tropics. Trends in Ecology and Evolution, 21, 157-165.
35. Maddison, W.P. & Maddison, D.R. (2010) Mesquite: a modular system for evolutionary analysis. Version 2.73.
36. Morrone, J.J. (2006) Biogeographic areas and transition zones of Latin America and the Caribbean islands based on panbiogeographic and cladistic analyses of the entomofauna. Annual Review of Entomology, 51, 467-494.
37. Moyle, L.C., Olson, M.S. & Tiffin, P. (2004) Patterns of reproductive isolation in three angiosperm genera. Evolution, 58, 1195-1208.
38. Olsen, K.M. (1999) Minisatellite variation in a single-copy nuclear gene: phylogenetic assessment of repeat length homoplasy and mutational mechanism. Molecular Biology and Evolution, 16, 1406-1409.
39. Olsen, K.M. (2004) SNPs, SSRs and inferences on cassava's origin. Plant Molecular Biology, 56, 517-526.
40. Olsen, K.M. & Schaal, B.A. (1999) Evidence on the origin of cassava: phylogeography of Manihot esculenta. Proceedings of the National Academy of Sciences USA, 96, 5586-5591.
41. Paradis, E. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290.
42. Parks, C.R. & Wendel, J.F. (1990) Molecular divergence between Asian and North American species of Liriodendron (Magnoliaceae) with implications for interpretation of fossil floras. American Journal of Botany, 77, 1243-1256.
43. Pennington, R.T. & Dick, C.W. (2004) The role of immigrants in the assembly of the South American rainforest tree flora. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, 1611-1622.
44. Pennington, R.T., Prado, D.E. & Pendry, C.A. (2000) Neotropical seasonally dry forests and Quaternary vegetation changes. Journal of Biogeography, 27, 261-273.
45. Pennington, R.T., Lavin, M., Prado, D.E., Pendry, C.A., Pell, S.K. & Butterworth, C.A. (2004) Historical climate change and speciation: neotropical seasonally dry forest plants show patterns of both Tertiary and Quaternary diversification. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, 515-537.
46. Pennington, R.T., Lewis, G.P. & Ratter, J.A. (2006) Neotropical savannas and seasonally dry forests: plant diversity, biogeography and conservation. Neotropical savannas and seasonally dry forests: plant diversity, biogeography and conservation (ed. by R.T. Pennington, G.P. Lewis and J.A. Ratter ), pp. 1-29. CRC Press, Boca Raton, FL.
47. Pennington, R.T., Lavin, M. & Oliveira-Filho, A. (2009) Woody plant diversity, evolution and ecology in the tropics: perspectives from seasonally dry tropical forests. Annual Review of Ecology, Evolution, and Systematics, 40, 437-457.
48. Pujol, B., Gigot, G., Laurent, G., Pinheiro-Kluppel, M., Elias, M., Hossaert-McKey, M. & McKey, D. (2002) Germination ecology of cassava (Manihot esculenta Crantz, Euphorbiaceae) in traditional agroecosystems: seed and seedling biology of a vegetatively propagated domesticated plant. Economic Botany, 56, 366-379.
49. Pujol, B., Mühlen, G.S., Garwood, N., Horoszowski, Y., Douzery, E.J.P. & McKey, D. (2005) Evolution under domestication: contrasting functional morphology of seedlings in domesticated cassava and its closest wild relatives. New Phytologist, 166, 305-318.
50. Quijada-Mascareñas, J.A., Ferguson, J.E., Pook, C.E., da Graça Salomão, M., Thorpe, R.S. & Wüster, W. (2007) Phylogeographic patterns of trans-Amazonian vicariants and Amazonian biogeography: the Neotropical rattlesnake (Crotalus durissus complex) as an example. Journal of Biogeography, 34, 1296-1312.
51. Ree, R.H. & Smith, S.A. (2008) Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology, 57, 4-14.
52. Renard, D., Schatz, B. & McKey, D. (2010) Ant nest architecture and seed burial depth: implications for seed fate and germination success in a myrmecochorous savanna shrub. Écoscience, 17, 194-202.
53. Richardson, J.E., Pennington, R.T., Pennington, T.D. & Hollingsworth, P.M. (2001) Rapid diversification of a species-rich genus of neotropical rain forest trees. Science, 293, 2242-2245.
54. Roa, A.C., Maya, M.M., Duque, M.C., Tohme, J., Allem, A.C. & Bonierbale, M.W. (1997) AFLP analysis of relationships among cassava and other Manihot species. Theoretical and Applied Genetics, 95, 741-750.
55. Roa, A.C., Chavarriaga-Aguirre, P., Duque, M.C., Maya, M.M., Bonierbale, M.W., Iglesias, C. & Tohme, J. (2000) Cross-species amplification of cassava (Manihot esculenta) (Euphorbiaceae) microsatellites: allelic polymorphism and degree of relationship. American Journal of Botany, 87, 1647-1655.
56. Rogers, D.J. & Appan, S.G. (1973) Manihot, Manihotoides (Euphorbiaceae). Flora Neotropica, Monograph 13. Haffer Press, New York.
57. Rogers, S.O. & Bendich, A.J. (1985) Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Molecular Biology, 5, 69-76.
58. Ronquist, F. (1997) Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. Systematic Biology, 46, 195-203.
59. Saslis-Lagoudakis, C., Chase, M.W., Robinson, D.N., Russell, S.J. & Klitgaard, B.B. (2008) Phylogenetics of Neotropical Platymiscium (Leguminosae: Dalbergieae): systematics, divergence times, and biogeography inferred from nuclear ribosomal and plastid DNA sequence data. American Journal of Botany, 95, 1270-1286.
60. Second, G., Allem, A.C., Mendes, R.A., Carvalho, L.J.C.B., Emperaire, L., Ingram, C. & Colombo, C. (1997) Molecular marker (AFLP)-based Manihot and cassava numerical taxonomy and genetic structure analysis in progress: implications for their dynamic conservation and genetic mapping. African Journal of Root and Tuber Crops, 2, 140-147.
61. Simon, M.F., Grether, R., de Queiroz, L.P., Skema, C., Pennington, R.T. & Hughes, C.E. (2009) Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire. Proceedings of the National Academy of Sciences USA, 106, 20359-20364.
62. Simpson, B., Larkin, L., Weeks, A. & McDill, J. (2006) Phylogeny and biogeography of Pomaria (Caesalpinioideae: Leguminosae). Systematic Botany, 31, 792-804.
63. Simpson, B.B., Weeks, A., Helfgott, M. & Larkin, L.L. (2004) Species relationships in Krameria (Krameriaceae) based on ITS sequences and morphology: implications for character utility and biogeography. Systematic Botany, 29, 97-108.
64. Simpson, B.B., Tate, J.A. & Weeks, A. (2005) The biogeography of Hoffmannseggia (Leguminosae, Caesalpinioideae, Caesalpinieae): a tale of many travels. Journal of Biogeography, 32, 15-27.
65. Strand, A.E., Leebens-Mack, J. & Milligan, B.G. (1997) Nuclear DNA-based markers for plant evolutionary biology. Molecular Ecology, 6, 113-118.
66. Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. (1991) Universal primers for amplification of three noncoding regions of chloroplast DNA. Plant Molecular Biology, 17, 1105-1109.
67. Vamosi, S.M., Heard, S.B., Vamosi, J.C. & Webb, C.O. (2009) Emerging patterns in the comparative analysis of phylogenetic community structure. Molecular Ecology, 18, 572-592.
68. Webb, S.D. (2006) The Great American Biotic Interchange: patterns and processes. Annals of the Missouri Botanical Garden, 93, 245-257.
69. Weir, J.T., Bermingham, E. & Schluter, D. (2009) The Great American Biotic Interchange in birds. Proceedings of the National Academy of Sciences USA, 106, 21737-21742.