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Volumn 19, Issue SUPPL. 1, 2010, Pages 132-146

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping

Author keywords

Homoeolog evolution; Polyploidy; Pyrosequencing; Tragopogon miscellus; Whole genome duplication

Indexed keywords

ASTERACEAE; TRAGOPOGON; TRAGOPOGON DUBIUS; TRAGOPOGON MISCELLUS; TRAGOPOGON PRATENSIS;

EID: 77950946551     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04469.x     Document Type: Article
Times cited : (116)

References (87)
  • 4
    • 3543074662 scopus 로고    scopus 로고
    • Spartina anglica C. E. Hubbard: A natural model system for analysing early evolutionary changes that affect allopolyploid genomes
    • Ainouche ML, Baumel A, Salmon A (2004) Spartina anglica C. E. Hubbard: a natural model system for analysing early evolutionary changes that affect allopolyploid genomes. Biological Journal of the Linnean Society, 82, 475-484.
    • (2004) Biological Journal of the Linnean Society , vol.82 , pp. 475-484
    • Ainouche, M.L.1    Baumel, A.2    Salmon, A.3
  • 6
    • 33748319356 scopus 로고    scopus 로고
    • Homoeologous gene silencing in hexaploid wheat
    • Bottley A, Xia GM, Koebner RMD (2006) Homoeologous gene silencing in hexaploid wheat. Plant Journal, 47, 897-906.
    • (2006) Plant Journal , vol.47 , pp. 897-906
    • Bottley, A.1    Xia, G.M.2    Rmd, K.3
  • 7
    • 42049115094 scopus 로고    scopus 로고
    • Towards natural polyploid model organisms
    • Buggs RJA (2008) Towards natural polyploid model organisms. Molecular Ecology, 17, 1875-1876.
    • (2008) Molecular Ecology , vol.17 , pp. 1875-1876
    • Rja, B.1
  • 8
    • 33947261080 scopus 로고    scopus 로고
    • Ecological differentiation and diploid superiority across a moving ploidy contact zone
    • Buggs RJA, Pannell JR (2007) Ecological differentiation and diploid superiority across a moving ploidy contact zone. Evolution, 61, 125-140.
    • (2007) Evolution , vol.61 , pp. 125-140
    • Rja, B.1    Pannell, J.R.2
  • 9
    • 68149099733 scopus 로고    scopus 로고
    • Gene loss and silencing in Tragopogon miscellus (Asteraceae): Comparison of natural and synthetic allotetraploids
    • Buggs RJA, Doust AN, Tate JA et al. (2009) Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids. Heredity, 103, 73-81.
    • (2009) Heredity , vol.103 , pp. 73-81
    • Rja, B.1    Doust, A.N.2    Tate, J.A.3
  • 10
    • 77951885556 scopus 로고    scopus 로고
    • Assembly-free comparative genomics of short-read sequence data discovers the needles in the haystack
    • Cannon CH, Kua C-S, Zhang D, Harting JR (2010) Assembly-free comparative genomics of short-read sequence data discovers the needles in the haystack. Molecular Ecology, 19 (Suppl. 1), 146-160.
    • (2010) Molecular Ecology , vol.19 , Issue.SUPPL. 1 , pp. 146-160
    • Cannon, C.H.1    Kua, C.-S.2    Zhang, D.3    Harting, J.R.4
  • 11
    • 39049156065 scopus 로고    scopus 로고
    • Short read fragment assembly of bacterial genomes
    • Chaisson MJ, Pevzner PA (2008) Short read fragment assembly of bacterial genomes. Genome Research, 18, 324-330.
    • (2008) Genome Research , vol.18 , pp. 324-330
    • Chaisson, M.J.1    Pevzner, P.A.2
  • 12
    • 67650888375 scopus 로고    scopus 로고
    • Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)
    • Chaudhary B, Flagel L, Stupar RM et al. (2009) Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium). Genetics, 182, 503-517.
    • (2009) Genetics , vol.182 , pp. 503-517
    • Chaudhary, B.1    Flagel, L.2    Stupar, R.M.3
  • 13
    • 0347982606 scopus 로고    scopus 로고
    • The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects
    • Chen ZJ, Wang J, Tian L et al. (2004) The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biological Journal of the Linnean Society, 82, 689-700.
    • (2004) Biological Journal of the Linnean Society , vol.82 , pp. 689-700
    • Chen, Z.J.1    Wang, J.2    Tian, L.3
  • 14
    • 45849142231 scopus 로고    scopus 로고
    • RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids
    • Chen M, Ha M, Lackey E, Wang JL, Chen ZJ (2008) RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids. Genetics, 178, 1845-1858.
    • (2008) Genetics , vol.178 , pp. 1845-1858
    • Chen, M.1    Ha, M.2    Lackey, E.3    Wang, J.L.4    Chen, Z.J.5
  • 15
    • 33751017957 scopus 로고    scopus 로고
    • Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology
    • Cheung F, Haas B, Goldberg S et al. (2006) Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. BMC Genomics, 7, 272.
    • (2006) BMC Genomics , vol.7 , pp. 272
    • Cheung, F.1    Haas, B.2    Goldberg, S.3
  • 16
    • 58149284036 scopus 로고    scopus 로고
    • Analysis of the Pythium ultimum transcriptome using Sanger and pyrosequencing approaches
    • Cheung F, Win J, Lang J et al. (2008) Analysis of the Pythium ultimum transcriptome using Sanger and pyrosequencing approaches. BMC Genomics, 9, 542.
    • (2008) BMC Genomics , vol.9 , pp. 542
    • Cheung, F.1    Win, J.2    Lang, J.3
  • 17
    • 0032895742 scopus 로고    scopus 로고
    • Mating systems of diploid and allotetraploid populations of Tragopogon (Asteraceae). I. Natural populations
    • Cook LM, Soltis PS (1999) Mating systems of diploid and allotetraploid populations of Tragopogon (Asteraceae). I. Natural populations. Heredity, 82, 237-244.
    • (1999) Heredity , vol.82 , pp. 237-244
    • Cook, L.M.1    Soltis, P.S.2
  • 18
    • 0034123844 scopus 로고    scopus 로고
    • Mating systems of diploid and allotetraploid populations of Tragopogon (Asteraceae). II. Artificial populations
    • Cook LM, Soltis PS (2000) Mating systems of diploid and allotetraploid populations of Tragopogon (Asteraceae). II. Artificial populations. Heredity, 84, 410-415.
    • (2000) Heredity , vol.84 , pp. 410-415
    • Cook, L.M.1    Soltis, P.S.2
  • 19
    • 25144456049 scopus 로고    scopus 로고
    • Allopolyploidy in wheat induces rapid and heritable alterations in DNA methylation patterns of cellular genes and mobile elements
    • Dong Y, Liu Z, Shan X et al. (2005) Allopolyploidy in wheat induces rapid and heritable alterations in DNA methylation patterns of cellular genes and mobile elements. Russian Journal of Genetics, 41, 890-896.
    • (2005) Russian Journal of Genetics , vol.41 , pp. 890-896
    • Dong, Y.1    Liu, Z.2    Shan, X.3
  • 20
    • 0002594984 scopus 로고
    • Genomic plant DNA preparation from fresh tissue-CTAB method
    • Doyle J, Doyle JL (1987) Genomic plant DNA preparation from fresh tissue-CTAB method. Phytochemical Bulletin, 19, 11-15.
    • (1987) Phytochemical Bulletin , vol.19 , pp. 11-15
    • Doyle, J.1    Doyle, J.L.2
  • 21
    • 34447291591 scopus 로고    scopus 로고
    • A TNF region haplotype offers protection from typhoid fever in Vietnamese patients
    • Dunstan S, Hue N, Rockett K et al. (2007) A TNF region haplotype offers protection from typhoid fever in Vietnamese patients. Human Genetics, 122, 51-61.
    • (2007) Human Genetics , vol.122 , pp. 51-61
    • Dunstan, S.1    Hue, N.2    Rockett, K.3
  • 22
    • 41149166756 scopus 로고    scopus 로고
    • Sequencing goes 454 and takes large-scale genomics into the wild
    • Ellegren H (2008) Sequencing goes 454 and takes large-scale genomics into the wild. Molecular Ecology, 17, 1629-1631.
    • (2008) Molecular Ecology , vol.17 , pp. 1629-1631
    • Ellegren, H.1
  • 23
    • 77951916371 scopus 로고    scopus 로고
    • Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes
    • Elmer KR, Fan S, Gunter HM, Jones JC, Boekhoff S, Kuraku S, Meyer A (2010) Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes. Molecular Ecology, 19 (Suppl. 1), 197-211.
    • (2010) Molecular Ecology , vol.19 , Issue.SUPPL. 1 , pp. 197-211
    • Elmer, K.R.1    Fan, S.2    Gunter, H.M.3    Jones, J.C.4    Boekhoff, S.5    Kuraku, S.6    Meyer, A.7
  • 24
    • 33845984917 scopus 로고    scopus 로고
    • Gene discovery and annotation using LCM-454 transcriptome sequencing
    • Emrich SJ, Barbazuk WB, Li L, Schnable PS (2007) Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Research, 17, 69-73.
    • (2007) Genome Research , vol.17 , pp. 69-73
    • Emrich, S.J.1    Barbazuk, W.B.2    Li, L.3    Schnable, P.S.4
  • 25
    • 40749143164 scopus 로고    scopus 로고
    • Transcript profiling by 3¢-untranslated region sequencing resolves expression of gene families
    • Eveland AL, McCarty DR, Koch KE (2008) Transcript profiling by 3¢-untranslated region sequencing resolves expression of gene families. Plant Physiology, 146, 32-44.
    • (2008) Plant Physiology , vol.146 , pp. 32-44
    • Eveland, A.L.1    McCarty, D.R.2    Koch, K.E.3
  • 26
    • 0030671532 scopus 로고    scopus 로고
    • Rapid elimination of low-copy DNA sequences in polyploid wheat: A possible mechanism for differentiation of homoeologous chromosomes
    • Feldman M, Liu B, Segal G et al. (1997) Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics, 147, 1381-1387.
    • (1997) Genetics , vol.147 , pp. 1381-1387
    • Feldman, M.1    Liu, B.2    Segal, G.3
  • 28
    • 42649126373 scopus 로고    scopus 로고
    • Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution
    • Flagel LE, Udall J, Nettleton D, Wendel J (2008) Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution. BMC Biology, 6, 16.
    • (2008) BMC Biology , vol.6 , pp. 16
    • Flagel, L.E.1    Udall, J.2    Nettleton, D.3    Wendel, J.4
  • 29
    • 67650317473 scopus 로고    scopus 로고
    • Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton
    • Flagel LE, Chen L, Chaudhary B, Wendel JF (2009) Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton. Journal of Heredity, 100, 487-490.
    • (2009) Journal of Heredity , vol.100 , pp. 487-490
    • Flagel, L.E.1    Chen, L.2    Chaudhary, B.3    Wendel, J.F.4
  • 31
    • 37849034684 scopus 로고    scopus 로고
    • Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype
    • Gaeta RT, Pires JC, Iniguez-Luy F, Leon E, Osborn TC (2007) Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell, 19, 3403-3417.
    • (2007) Plant Cell , vol.19 , pp. 3403-3417
    • Gaeta, R.T.1    Pires, J.C.2    Iniguez-Luy, F.3    Leon, E.4    Osborn, T.C.5
  • 33
    • 3142750575 scopus 로고    scopus 로고
    • Allelic variation of gene expression in maize hybrids
    • Guo M, Rupe MA, Zinselmeier C et al. (2004) Allelic variation of gene expression in maize hybrids. Plant Cell, 16, 1707-1716.
    • (2004) Plant Cell , vol.16 , pp. 1707-1716
    • Guo, M.1    Rupe, M.A.2    Zinselmeier, C.3
  • 34
    • 0035010640 scopus 로고    scopus 로고
    • Automation in genotyping of single nucleotide polymorphisms
    • Gut IG (2001) Automation in genotyping of single nucleotide polymorphisms. Human Mutation, 17, 475-492.
    • (2001) Human Mutation , vol.17 , pp. 475-492
    • Gut, I.G.1
  • 35
    • 77951884076 scopus 로고    scopus 로고
    • Genome-wide analysis of alternative splicing evolution among Mus subspecies
    • Harr B, Turner LM (2010) Genome-wide analysis of alternative splicing evolution among Mus subspecies. Molecular Ecology, 19 (Suppl. 1), 228-239.
    • (2010) Molecular Ecology , Issue.19 SUPPL. 1 , pp. 228-239
    • Harr, B.1    Turner, L.M.2
  • 36
    • 21244449997 scopus 로고    scopus 로고
    • Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation
    • Hegarty M, Jones J, Wilson I et al. (2005) Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation. Molecular Ecology, 14, 2493-2510.
    • (2005) Molecular Ecology , vol.14 , pp. 2493-2510
    • Hegarty, M.1    Jones, J.2    Wilson, I.3
  • 37
    • 33747161960 scopus 로고    scopus 로고
    • Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication
    • Hegarty M, Barker G, Wilson I et al. (2006) Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication. Current Biology, 16, 1652-1659.
    • (2006) Current Biology , vol.16 , pp. 1652-1659
    • Hegarty, M.1    Barker, G.2    Wilson, I.3
  • 38
    • 38749149152 scopus 로고    scopus 로고
    • Whole-genome sequencing and variant discovery in C. elegans
    • Hillier LW, Marth GT, Quinlan AR et al. (2008) Whole-genome sequencing and variant discovery in C. elegans. Nature Methods, 5, 183-188.
    • (2008) Nature Methods , vol.5 , pp. 183-188
    • Hillier, L.W.1    Marth, G.T.2    Quinlan, A.R.3
  • 39
    • 44849092474 scopus 로고    scopus 로고
    • The new paradigm of flow cell sequencing
    • Holt RA, Jones SJM (2008) The new paradigm of flow cell sequencing. Genome Research, 18, 839-846.
    • (2008) Genome Research , vol.18 , pp. 839-846
    • Holt, R.A.1    Sjm, J.2
  • 40
    • 36849073678 scopus 로고    scopus 로고
    • Sequencing breakthroughs for genomic ecology and evolutionary biology
    • Hudson ME (2008) Sequencing breakthroughs for genomic ecology and evolutionary biology. Molecular Ecology Resources, 8, 3-17.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 3-17
    • Hudson, M.E.1
  • 41
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • Johnson DS, Mortazavi A, Myers RM, Wold B (2007) Genome-wide mapping of in vivo protein-DNA interactions. Science, 316, 1497-1502.
    • (2007) Science , vol.316 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 42
    • 3042588947 scopus 로고    scopus 로고
    • Evolutionary dynamics and preferential expression of homeologous 18S-5.8S-26S nuclear ribosomal genes in natural and artificial Glycine allopolyploids
    • Joly S, Rauscher JT, Sherman-Broyles SL, Brown AHD, Doyle JJ (2004) Evolutionary dynamics and preferential expression of homeologous 18S-5.8S-26S nuclear ribosomal genes in natural and artificial Glycine allopolyploids. Molecular Biology and Evolution, 21, 1409-1421.
    • (2004) Molecular Biology and Evolution , vol.21 , pp. 1409-1421
    • Joly, S.1    Rauscher, J.T.2    Sherman-Broyles, S.L.3    Ahd, B.4    Doyle, J.J.5
  • 44
    • 0036241339 scopus 로고    scopus 로고
    • Gene loss, silencing and activation in a newly synthesized wheat allotetraploid
    • Kashkush K, Feldman M, Levy AA (2002) Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics, 160, 1651-1659.
    • (2002) Genetics , vol.160 , pp. 1651-1659
    • Kashkush, K.1    Feldman, M.2    Levy, A.A.3
  • 46
    • 66149166189 scopus 로고    scopus 로고
    • Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression
    • Kim J, Bartel DP (2009) Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression. Nature Biotechnology, 27, 472-477.
    • (2009) Nature Biotechnology , vol.27 , pp. 472-477
    • Kim, J.1    Bartel, D.P.2
  • 47
    • 15944381065 scopus 로고    scopus 로고
    • Phylogeny and diversification of B-function MADS-box genes in angiosperms: Evolutionary and functional implications of a 260-million-year-old duplication
    • Kim S, Yoo M-J, Albert VA et al. (2004) Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication. American Journal of Botany, 91, 2102-2118.
    • (2004) American Journal of Botany , vol.91 , pp. 2102-2118
    • Kim, S.1    Yoo, M.-J.2    Albert, V.A.3
  • 48
    • 15544385627 scopus 로고    scopus 로고
    • Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin
    • Kovarik A, Pires JC, Leitch AR et al. (2005) Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics, 169, 931-944.
    • (2005) Genetics , vol.169 , pp. 931-944
    • Kovarik, A.1    Pires, J.C.2    Leitch, A.R.3
  • 49
    • 0035776497 scopus 로고    scopus 로고
    • Methods for genotyping single nucleotide polymorphisms
    • Kwok PY (2001) Methods for genotyping single nucleotide polymorphisms. Annual Review of Genomics and Human Genetics, 2, 235-258.
    • (2001) Annual Review of Genomics and Human Genetics , vol.2 , pp. 235-258
    • Kwok, P.Y.1
  • 50
    • 0347352344 scopus 로고    scopus 로고
    • Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization
    • Levy AA, Feldman M (2004) Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization. Biological Journal of the Linnean Society, 82, 607-613.
    • (2004) Biological Journal of the Linnean Society , vol.82 , pp. 607-613
    • Levy, A.A.1    Feldman, M.2
  • 52
    • 54449101933 scopus 로고    scopus 로고
    • Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae)
    • Lim KY, Soltis DE, Soltis PS et al. (2008) Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae). PLoS ONE, 3, e3353.
    • (2008) PLoS ONE , vol.3
    • Lim, K.Y.1    Soltis, D.E.2    Soltis, P.S.3
  • 53
    • 77957916454 scopus 로고    scopus 로고
    • High-throughput genetic mapping of mutants via quantitative SNP-typing
    • Liu S, Chen D, Makarevitch I et al. (2009) High-throughput genetic mapping of mutants via quantitative SNP-typing. Genetics (submitted).
    • Genetics (Submitted) , vol.2009
    • Liu, S.1    Chen, D.2    Makarevitch, I.3
  • 54
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science, 290, 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 55
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437, 376-380.
    • Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3
  • 56
    • 0032706623 scopus 로고    scopus 로고
    • A general approach to single-nucleotide polymorphism discovery
    • Marth GT, Korf I, Yandell MD et al. (1999) A general approach to single-nucleotide polymorphism discovery. Nature Genetics, 23, 452-456.
    • (1999) Nature Genetics , vol.23 , pp. 452-456
    • Marth, G.T.1    Korf, I.2    Yandell, M.D.3
  • 57
    • 34547803564 scopus 로고    scopus 로고
    • Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression
    • Matyasek R, Tate JA, Lim YK et al. (2007) Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression. Genetics, 176, 2509-2519.
    • (2007) Genetics , vol.176 , pp. 2509-2519
    • Matyasek, R.1    Tate, J.A.2    Lim, Y.K.3
  • 58
    • 14844317668 scopus 로고    scopus 로고
    • Phylogeny of Tragopogon L. (Asteraceae) based on internal and external transcribed spacer sequence data
    • Mavrodiev EV, Tancig M, Sherwood AM et al. (2005) Phylogeny of Tragopogon L. (Asteraceae) based on internal and external transcribed spacer sequence data. International Journal of Plant Sciences, 166, 117-133.
    • (2005) International Journal of Plant Sciences , vol.166 , pp. 117-133
    • Mavrodiev, E.V.1    Tancig, M.2    Sherwood, A.M.3
  • 59
    • 48249125753 scopus 로고    scopus 로고
    • High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
    • Novaes E, Drost D, Farmerie W et al. (2008) High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics, 9, 312.
    • (2008) BMC Genomics , vol.9 , pp. 312
    • Novaes, E.1    Drost, D.2    Farmerie, W.3
  • 61
    • 0000816013 scopus 로고
    • Natural hybridization and amphiploidy in the genus Tragopogon
    • Ownbey M (1950) Natural hybridization and amphiploidy in the genus Tragopogon. American Journal of Botany, 37, 487-499.
    • (1950) American Journal of Botany , vol.37 , pp. 487-499
    • Ownbey, M.1
  • 62
    • 39549102178 scopus 로고    scopus 로고
    • Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: Application to the large and unsequenced genomes of white spruce and black spruce
    • Pavy N, Pelgas B, Beauseigle S et al. (2008) Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce. BMC Genomics, 9, 21.
    • (2008) BMC Genomics , vol.9 , pp. 21
    • Pavy, N.1    Pelgas, B.2    Beauseigle, S.3
  • 63
    • 34250328313 scopus 로고    scopus 로고
    • Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum)
    • Petit M, Lim K, Julio E et al. (2007) Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum). Molecular Genetics and Genomics, 278, 1-15.
    • (2007) Molecular Genetics and Genomics , vol.278 , pp. 1-15
    • Petit, M.1    Lim, K.2    Julio, E.3
  • 64
    • 0033965855 scopus 로고    scopus 로고
    • The TIGR gene indices: Reconstruction and representation of expressed gene sequences
    • Quackenbush J, Liang F, Holt I, Pertea G, Upton J (2000) The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Research, 28, 141-145.
    • (2000) Nucleic Acids Research , vol.28 , pp. 141-145
    • Quackenbush, J.1    Liang, F.2    Holt, I.3    Pertea, G.4    Upton, J.5
  • 65
    • 77951936990 scopus 로고    scopus 로고
    • Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae)
    • Renaut S, Nolte AW, Bernatchez L (2010) Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae). Molecular Ecology, 19 (Suppl. 1), 114-130.
    • (2010) Molecular Ecology , vol.19 , Issue.SUPPL. 1 , pp. 114-130
    • Renaut, S.1    Nolte, A.W.2    Bernatchez, L.3
  • 67
    • 63949086151 scopus 로고    scopus 로고
    • Gene mapping in the wild with SNPs: Guidelines and future directions
    • Slate J, Gratten J, Beraldi D et al. (2009) Gene mapping in the wild with SNPs: guidelines and future directions. Genetica, 136, 97-107.
    • (2009) Genetica , vol.136 , pp. 97-107
    • Slate, J.1    Gratten, J.2    Beraldi, D.3
  • 68
    • 0001632482 scopus 로고
    • Allopolyploid speciation in Tragopogon: Insights from chloroplast DNA
    • Soltis DE, Soltis PS (1989) Allopolyploid speciation in Tragopogon: insights from chloroplast DNA. American Journal of Botany, 76, 14-18.
    • (1989) American Journal of Botany , vol.76 , pp. 14-18
    • Soltis, D.E.1    Soltis, P.S.2
  • 69
    • 0033198094 scopus 로고    scopus 로고
    • Polyploidy: Recurrent formation and genome evolution
    • Soltis DE, Soltis PS (1999) Polyploidy: recurrent formation and genome evolution. Trends in Ecology & Evolution, 14, 348-352.
    • (1999) Trends in Ecology & Evolution , vol.14 , pp. 348-352
    • Soltis, D.E.1    Soltis, P.S.2
  • 70
    • 0028872265 scopus 로고
    • Genetic variation in Tragopogon species: Additional origins of the allotetraploids T. mirus and T. miscellus (Compositae)
    • Soltis PS, Plunkett GM, Novak SJ, Soltis DE (1995) Genetic variation in Tragopogon species: additional origins of the allotetraploids T. mirus and T. miscellus (Compositae). American Journal of Botany, 82, 1329-1341.
    • (1995) American Journal of Botany , vol.82 , pp. 1329-1341
    • Soltis, P.S.1    Plunkett, G.M.2    Novak, S.J.3    Soltis, D.E.4
  • 71
    • 0347352354 scopus 로고    scopus 로고
    • Recent and recurrent polyploidy in Tragopogon (Asteraceae): Cytogenetic, genomic and genetic comparisons
    • Soltis DE, Soltis PS, Pires JC et al. (2004a) Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogenetic, genomic and genetic comparisons. Biological Journal of the Linnean Society, 82, 485-501.
    • (2004) Biological Journal of the Linnean Society , vol.82 , pp. 485-501
    • Soltis, D.E.1    Soltis, P.S.2    Pires, J.C.3
  • 72
    • 0347388384 scopus 로고    scopus 로고
    • Advances in the study of polyploidy since plant speciation
    • Soltis DE, Soltis PS, Tate JA (2004b) Advances in the study of polyploidy since plant speciation. New Phytologist, 161, 173-191.
    • (2004) New Phytologist , vol.161 , pp. 173-191
    • Soltis, D.E.1    Soltis, P.S.2    Tate, J.A.3
  • 74
    • 0010771662 scopus 로고
    • Polyploid complexes in relation to ecology and the history of floras
    • Stebbins GL (1942) Polyploid complexes in relation to ecology and the history of floras. American Naturalist, 76, 36-45.
    • (1942) American Naturalist , vol.76 , pp. 36-45
    • Stebbins, G.L.1
  • 75
    • 33747866029 scopus 로고    scopus 로고
    • Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F-1 hybrid
    • Stupar RM, Springer NM (2006) Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F-1 hybrid. Genetics, 173, 2199-2210.
    • (2006) Genetics , vol.173 , pp. 2199-2210
    • Stupar, R.M.1    Springer, N.M.2
  • 76
    • 70450180852 scopus 로고    scopus 로고
    • Widespread paternal genomic imprinting of trans-eQTL influences gene expression patterns in maize hybrids
    • Swanson-Wagner R, DeCook R, Jia Y et al. (2009) Widespread paternal genomic imprinting of trans-eQTL influences gene expression patterns in maize hybrids. Science, 326, 1118-1120.
    • (2009) Science , vol.326 , pp. 1118-1120
    • Swanson-Wagner, R.1    Decook, R.2    Jia, Y.3
  • 77
    • 33746424003 scopus 로고    scopus 로고
    • Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid
    • Tate JA, Ni ZF, Scheen AC et al. (2006) Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics, 173, 1599-1611.
    • (2006) Genetics , vol.173 , pp. 1599-1611
    • Tate, J.A.1    Ni, Z.F.2    Scheen, A.C.3
  • 78
    • 67651176366 scopus 로고    scopus 로고
    • On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae)
    • Tate J, Joshi P, Soltis K, Soltis P, Soltis D (2009a) On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae). BMC Plant Biology, 9, 80.
    • (2009) BMC Plant Biology , vol.9 , pp. 80
    • Tate, J.1    Joshi, P.2    Soltis, K.3    Soltis, P.4    Soltis, D.5
  • 79
    • 67549114985 scopus 로고    scopus 로고
    • Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 Years after Ownbey's discovery
    • Tate JA, Symonds VV, Doust AN et al. (2009b) Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 Years after Ownbey's discovery. American Journal of Botany, 96, 979-988.
    • (2009) American Journal of Botany , vol.96 , pp. 979-988
    • Tate, J.A.1    Symonds, V.V.2    Doust, A.N.3
  • 80
    • 33845574749 scopus 로고    scopus 로고
    • Polyploidy and crop improvement
    • Udall JA, Wendel JF (2006) Polyploidy and crop improvement. Crop Science, 46, S3-S14.
    • (2006) Crop Science , vol.46
    • Udall, J.A.1    Wendel, J.F.2
  • 81
    • 77749324529 scopus 로고    scopus 로고
    • Genome-wide SNP detection in the great tit Parus major using high throughput sequencing
    • Van Bers NEM, van Oers K, Kerstens HHD, Dibbits BW, Crooijmans RPMA, Visser ME, Groenen MAM (2010) Genome-wide SNP detection in the great tit Parus major using high throughput sequencing. Molecular Ecology, 19 (Suppl. 1), 88-98.
    • (2010) Molecular Ecology , vol.19 , Issue.SUPPL. 1 , pp. 88-98
    • Van Bers Nem1    Van Oers, K.2    Hhd, K.3    Dibbits, B.W.4    Rpma, C.5    Visser, M.E.6    Mam, G.7
  • 82
    • 40149098690 scopus 로고    scopus 로고
    • SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
    • Van Tassell CP, Smith TPL, Matukumalli LK et al. (2008) SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature Methods, 5, 247-252.
    • (2008) Nature Methods , vol.5 , pp. 247-252
    • Van Tassell, C.P.1    Tpl, S.2    Matukumalli, L.K.3
  • 83
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • Vera JC, Wheat CW, Fescemyer HW et al. (2008) Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular Ecology, 17, 1636-1647.
    • (2008) Molecular Ecology , vol.17 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3
  • 84
    • 33644762929 scopus 로고    scopus 로고
    • Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
    • Wang J, Tian L, Lee H-S et al. (2006) Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics, 172, 507-517.
    • (2006) Genetics , vol.172 , pp. 507-517
    • Wang, J.1    Tian, L.2    Lee, H.-S.3
  • 85
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics, 10, 57-63.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 86
    • 77951908578 scopus 로고    scopus 로고
    • Finding a (pine) needle in a haystack: Chloroplast genome sequence divergence in rare and widespread pines
    • Whittall JB, Syring J, Parks M, Buenrostro J, Dick C, Liston A, Cronn R (2010) Finding a (pine) needle in a haystack: Chloroplast genome sequence divergence in rare and widespread pines. Molecular Ecology, 19 (Suppl. 1), 100-114.
    • (2010) Molecular Ecology , vol.19 , Issue.SUPPL. 1 , pp. 100-114
    • Whittall, J.B.1    Syring, J.2    Parks, M.3    Buenrostro, J.4    Dick, C.5    Liston, A.6    Cronn, R.7
  • 87
    • 77951917823 scopus 로고    scopus 로고
    • Nucleotide divergence versus gene expression differentiation: Comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow
    • Wolf JBW, Bayer T, Haubold B, Schilhabel M, Rosenstiel P, Tautz D (2010) Nucleotide divergence versus gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology, 19 (Suppl. 1), 162-175.
    • (2010) Molecular Ecology , vol.19 , Issue.SUPPL. 1 , pp. 162-175
    • Jbw, W.1    Bayer, T.2    Haubold, B.3    Schilhabel, M.4    Rosenstiel, P.5    Tautz, D.6


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