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Volumn 36, Issue SUPPL. 1, 2008, Pages

PlantTribes: A gene and gene family resource for comparative genomics in plants

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; PLANT DNA; PROTEOME; VEGETABLE PROTEIN;

EID: 38549087500     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm972     Document Type: Article
Times cited : (83)

References (33)
  • 1
    • 23744454242 scopus 로고    scopus 로고
    • A cluster algorithm for graphs
    • Technical Report INS-R0010
    • Van Dongen,S. (2000) A cluster algorithm for graphs. Technical Report INS-R0010.
    • (2000)
    • Van Dongen, S.1
  • 2
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright,A.J., Van Dongen,S. and Ouzounis,C.A. (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res., 30, 1575-1584.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 3
    • 0347432399 scopus 로고    scopus 로고
    • PlantGDB, plant genome database and analysis tools
    • Dong,Q., Schlueter,S.D. and Brendel,V. (2004) PlantGDB, plant genome database and analysis tools. Nucleic Acids Res., 32, D354-D359.
    • (2004) Nucleic Acids Res , vol.32
    • Dong, Q.1    Schlueter, S.D.2    Brendel, V.3
  • 4
    • 13444293288 scopus 로고    scopus 로고
    • openSputnik - a database to ESTablish comparative plant genomics using unsaturated sequence collections
    • Rudd,S. (2005) openSputnik - a database to ESTablish comparative plant genomics using unsaturated sequence collections. Nucleic Acids Res. 33, D622-D627.
    • (2005) Nucleic Acids Res , vol.33
    • Rudd, S.1
  • 10
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar,R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 11
    • 11144358140 scopus 로고    scopus 로고
    • PRAP - computation of Bremer support for large data sets
    • Müller,K.F. (2004) PRAP - computation of Bremer support for large data sets. Mol. Phylogenet. Evol., 31, 780-782.
    • (2004) Mol. Phylogenet. Evol , vol.31 , pp. 780-782
    • Müller, K.F.1
  • 12
    • 38549170917 scopus 로고    scopus 로고
    • Swofford,D.L, 2002) PAUP*. Phylogenetic Analysis Using Parsimony *and Other Methods, Version 4
    • Swofford,D.L. (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.
  • 13
    • 0033504552 scopus 로고    scopus 로고
    • The Parsimony Ratchet, a new method for rapid parsimony analysis
    • Nixon,K.C. (1999) The Parsimony Ratchet, a new method for rapid parsimony analysis. Cladistics, 15, 407-414.
    • (1999) Cladistics , vol.15 , pp. 407-414
    • Nixon, K.C.1
  • 15
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: A fast program for maximum likelihood based inference of large phylogenetic trees
    • Stamatakis,A., Ludwig,T. and Meier,H. (2005) RAxML-III: A fast program for maximum likelihood based inference of large phylogenetic trees. Bioinformatics, 21, 456-463.
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 16
    • 9644287776 scopus 로고    scopus 로고
    • TreeGraph: Automated drawing of complex tree figures using an extensible tree description format
    • Müller,J. and Müller,K. (2004) TreeGraph: Automated drawing of complex tree figures using an extensible tree description format. Mol. Ecol. Notes, 4, 786-788.
    • (2004) Mol. Ecol. Notes , vol.4 , pp. 786-788
    • Müller, J.1    Müller, K.2
  • 17
    • 30744464824 scopus 로고    scopus 로고
    • Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis
    • Duarte,J.M., Cui,L.Y., Wall,P.K., Zhang,Q., Zhang,X.H., Leebens-Mack,J., Ma,H, Altman,N. and dePamphilis,C.W. (2006) Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 23, 469-478.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 469-478
    • Duarte, J.M.1    Cui, L.Y.2    Wall, P.K.3    Zhang, Q.4    Zhang, X.H.5    Leebens-Mack, J.6    Ma, H.7    Altman, N.8    dePamphilis, C.W.9
  • 19
    • 0347968038 scopus 로고    scopus 로고
    • NASCArrays: A repository for microarray data generated by NASC's transcriptomics service
    • Craigon,D.J., Jamcs,N., Okycre,J., Higgins,J., Jotham,J. and May,S. (2004) NASCArrays: A repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res., 32, D575-D577.
    • (2004) Nucleic Acids Res , vol.32
    • Craigon, D.J.1    Jamcs, N.2    Okycre, J.3    Higgins, J.4    Jotham, J.5    May, S.6
  • 20
    • 1842426839 scopus 로고    scopus 로고
    • Towards a comprehensive integration of morphological and genetic studies of floral development
    • Buzgo,M., Soltis,D.E., Soltis,P.S. and Ma,H. (2004) Towards a comprehensive integration of morphological and genetic studies of floral development. Trends Plant Sci., 9, 164-173.
    • (2004) Trends Plant Sci , vol.9 , pp. 164-173
    • Buzgo, M.1    Soltis, D.E.2    Soltis, P.S.3    Ma, H.4
  • 27
    • 33749033318 scopus 로고    scopus 로고
    • EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6000 genes from a basal eudicot
    • Carlson,J.E., Leebens-Mack,J.H., Wall,P.K., Zahn,L.M., Mueller,L.A., Landherr,L.L., Hu,Y., Ilut,D.C., Arrington,J.M. et al. (2006) EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6000 genes from a basal eudicot. Plant Mol. Biol., 62, 351-369.
    • (2006) Plant Mol. Biol , vol.62 , pp. 351-369
    • Carlson, J.E.1    Leebens-Mack, J.H.2    Wall, P.K.3    Zahn, L.M.4    Mueller, L.A.5    Landherr, L.L.6    Hu, Y.7    Ilut, D.C.8    Arrington, J.M.9
  • 28
    • 28944435369 scopus 로고    scopus 로고
    • Phylogeny and domain evolution in the APETALA2-like gene family
    • Kim,S., Soltis,P.S., Wall,K. and Soltis,D.E. (2006) Phylogeny and domain evolution in the APETALA2-like gene family. Mol. Biol. Evol., 23, 107-120.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 107-120
    • Kim, S.1    Soltis, P.S.2    Wall, K.3    Soltis, D.E.4
  • 29
    • 46749093968 scopus 로고    scopus 로고
    • Utility of Amborella trichopoda and Nuphar advena ESTs for phylogeny and comparative sequence analysis
    • in press
    • Duarte,J.M., Wall,P.K., Zahn,L.M., Leebeens-Mack,J.H. and dePamphilis,C.W. Utility of Amborella trichopoda and Nuphar advena ESTs for phylogeny and comparative sequence analysis. Taxon (in press).
    • Taxon
    • Duarte, J.M.1    Wall, P.K.2    Zahn, L.M.3    Leebeens-Mack, J.H.4    dePamphilis, C.W.5
  • 32
    • 32944468574 scopus 로고    scopus 로고
    • Genome histories clarify evolution of the expansin superfamily: New insights from the poplar genome and pine ESTs
    • Sampedro,J., Carey,R.E. and Cosgrove,D.J. (2006) Genome histories clarify evolution of the expansin superfamily: New insights from the poplar genome and pine ESTs. J. Plant Res., 119, 11-21.
    • (2006) J. Plant Res , vol.119 , pp. 11-21
    • Sampedro, J.1    Carey, R.E.2    Cosgrove, D.J.3
  • 33
    • 0345255239 scopus 로고    scopus 로고
    • Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny
    • Martinez-Castilla,L.P. and Alvarez-Buylla,E.R. (2003) Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny. Proc. Natl Acad. Sci. USA, 100, 13407-13412.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 13407-13412
    • Martinez-Castilla, L.P.1    Alvarez-Buylla, E.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.