Phylogenetic relationships in Rhexia (Melastomataceae): Evidence from DNA sequence data and morphology

International Journal of Plant Sciences

Volumn 168, Issue 7, 2007, Pages 1055-1066

  Ionta, Gretchen M ^a   Judd, Walter S ^a   Williams, Norris H ^b   Whitten, W Mark ^b  

^a UNIVERSITY OF FLORIDA   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

Hybrid origin; Melastomataceae; ncpGS; Phylogeny; Rhexia; trnC D

Indexed keywords

CHLOROPLAST; DICOTYLEDON; DNA; HABITAT TYPE; MORPHOLOGY; PHYLOGENETICS;

ATLANTIC ISLANDS; ATLANTIC OCEAN; CANADA; CARIBBEAN ISLANDS; FLORIDA [UNITED STATES]; NORTH AMERICA; NOVA SCOTIA; TEXAS; UNITED STATES;

MELASTOMATACEAE; RHEXIA; RHEXIA CUBENSIS; RHEXIA LUTEA; RHEXIA MARIANA; RHEXIA NASHII; RHEXIA PARVIFLORA; RHEXIA PETIOLATA; RHEXIA SALICIFOLIA; RHEXIA VIRGINICA;

EID: 35348833458     PISSN: 10585893     EISSN: None     Source Type: Journal    
DOI: 10.1086/518837     Document Type: Article

References (31)

1. Blattner FR 1999 Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR. BioTechniques 27:1180-1186.
2. Bradley RD, DM Hillis 1997 Recombinant DNA sequences generated by PCR amplification. Mol Biol Evol 14:592-593.
3. Clausing G, SS Renner 2001 Molecular phylogenetics of Melastomataceae and Memecylaceae: implications for character evolution. Am J Bot 88:486-498.
4. Cronn R, M Cedroni, T Haselkorn, C Osborne, JF Wendel 2002 PCR-mediated recombination in amplification products derived from polyploid cotton. Theor Appl Genet 104:482-489.
5. Demesure B, N Sodzi, RJ Petit 1995 A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol Ecol 4:129-131.
6. Doyle JJ 1992 Gene trees and species trees: molecular systematics as one-character taxonomy. Syst Bot 17:144-163.
7. Doyle JJ, JL Doyle 1987 A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11-15.
8. Emshwiller E, J Doyle 1998 Evidence for origins of polyploidy of Oxalis tuberosa from chloroplast-expressed glutamine synthetase. Am J Bot 85(suppl):125.
9. _ 2002 Origins of domestication and polyploidy in oca (Oxalis tuberosa: Oxalidaceae). 2. Chloroplast-expressed glutamine synthetase data. Am J Bot 89:1042-1056.
10. Felsenstein J 1985 Confidence limits on phylogenies: an approach using bootstrap. Evolution 39:783-791.
11. Huelsenbeck JP, JJ Bull, CW Cunningham 1996 Combining data in phylogenetic analysis. Trends Ecol Evol 11:152-158.
12. James CW 1956 A revision of Rhexia (Melastomataceae). Brittonia 8:201-230.
13. Jansen R, FD Ledley 1990 Disruption of phase during PCR amplification and cloning of heterozygous target sequences. Nucleic Acids Res 18:5153-5156.
14. Kral R, PE Bostick 1969 The genus Rhexia (Melastomataceae). SIDA Contrib Bot 3:387-440.
15. Maddison WP, DRMaddison 2001 MacClade: analysis of phylogeny and character evolution, version 4.05. Sinauer, Sunderland, MA.
16. Mason-Gamer RJ, EA Kellogg 1996 Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst Biol 45:524-545.
17. Rambaut A 1996 Se-Al: sequence alignment editor. http://evolve.zoo.ox.ac. uk/.
18. Renner SS 1993 Phylogeny and classification of the Melastomataceae and Memecylaceae. Nord J Bot 13:519-540.
19. Renner SS, K Meyer 2001 Melastomeae come full circle: biogeographic reconstruction and molecular clock dating. Evolution 55:1315-1324.
20. Sanderson MJ, JJ Doyle 1992 Reconstruction of organismal and gene phylogenies from data on multigene families: concerted evolution, homoplasy and confidence. Syst Biol 41:4-17.
21. Shaw J, EB Lickey, JT Beck, SB Farmer, W Liu, J Miller, KC Siripun, CT Winder, EE Schilling, RL Small 2005 The tortoise and the hare. II. Relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Am J Bot 92:142-166.
22. Soltis DE, RK Kuzoff 1995 Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae). Evolution 49:727-742.
23. Soltis DE, RK Kuzoff, ME Mort, M Zanis, M Fishbein, L Hufford, J Koontz, MK Arroyo 2001 Elucidating deep-level phylogenetic relationships in Saxifragaceae using sequences for six chloroplastic and nuclear DNA regions. Ann Mo Bot Gard 88:669-693.
24. Stevens PF 1991 Character states, morphological variation, and phylogenetic analysis: a review. Syst Bot 16:553-583.
25. Sun Y, DZ Skinner, GH Liang, SH Hulbert 1994 Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA. Theor Appl Genet 89:26-32.
26. Swofford DL 1999 PAUP* 4.0b10. Phylogenetic analysis using parsimony (*and other methods). Sinauer, Sunderland, MA.
27. Wendel JF, A Schnabel, T Seelanan 1995 Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc Natl Acad Sci USA 92:280-284.
28. Whiffin T, AS Tomb 1972 The systematic significance of seed morphology in the Neotropical capsular-fruited Melastomataceae. Am J Bot 59:411-422.
29. Wurdack JJ, R Kral 1982 The genera of Melastomataceae in the southeastern United States. J Arnold Arbor Harv Univ 63:429-439.
30. Yockteng R, S Nadot 2004 Infrageneric phylogenies: a comparison of chloroplast-expressed glutamine synthetase, cytosol-expressed glutamine synthetase and cpDNA maturase K in Passiflora. Mol Phylogenet Evol 31:397-402.
31. Yoo KO, PP Lowrey II, J Wen 2002 Discordance of chloroplast and nuclear ribosomal DNA data in Osmorhiza (Apiaceae). Am J Bot 89:966-971.