-
1
-
-
0028948394
-
Mammalian DNA nucleotide excision repair reconstituted with purified protein components
-
Aboussekhra A, Biggerstaff M, Shivji MK, Vilpo JA, Mon-collin V, Podust VN, Protic M, Hubscher U, Egly JM, Wood RD. 1995. Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell 80: 859-868.
-
(1995)
Cell
, vol.80
, pp. 859-868
-
-
Aboussekhra, A.1
Biggerstaff, M.2
Shivji, M.K.3
Vilpo, J.A.4
Mon-Collin, V.5
Podust, V.N.6
Protic, M.7
Hubscher, U.8
Egly, J.M.9
Wood, R.D.10
-
2
-
-
0242605710
-
Nucleotide excision repair of DNA with recombinant human proteins: Definition of the minimal set of factors, active forms of TFIIH, and modulation by CAK
-
Araujo SJ, Tirode F, Coin F, Pospiech H, Syvaoja JE, Stucki M, Hubscher U, Egly JM, Wood RD. 2000. Nucleotide excision repair of DNA with recombinant human proteins: Definition of the minimal set of factors, active forms of TFIIH, and modulation by CAK. Genes Dev 14: 349-359.
-
(2000)
Genes Dev
, vol.14
, pp. 349-359
-
-
Araujo, S.J.1
Tirode, F.2
Coin, F.3
Pospiech, H.4
Syvaoja, J.E.5
Stucki, M.6
Hubscher, U.7
Egly, J.M.8
Wood, R.D.9
-
3
-
-
0035102950
-
Strong functional interactions of TFIIH with XPC and XPG in human DNA nucleotide excision repair, without a preassembled re-pairosome
-
Araujo SJ, Nigg EA, Wood RD. 2001. Strong functional interactions of TFIIH with XPC and XPG in human DNA nucleotide excision repair, without a preassembled re-pairosome. Mol Cell Biol 21: 2281-2291.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 2281-2291
-
-
Araujo, S.J.1
Nigg, E.A.2
Wood, R.D.3
-
4
-
-
33646584518
-
DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of his-tone H2A
-
Bergink S, Salomons FA, Hoogstraten D, Groothuis TA, de Waard H, Wu J, Yuan L, Citterio E, Houtsmuller AB, Neefjes J, et al. 2006. DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of his-tone H2A. Genes Dev 20: 1343-1352.
-
(2006)
Genes Dev
, vol.20
, pp. 1343-1352
-
-
Bergink, S.1
Salomons, F.A.2
Hoogstraten, D.3
Groothuis, T.A.4
de Waard, H.5
Wu, J.6
Yuan, L.7
Citterio, E.8
Houtsmuller, A.B.9
Neefjes, J.10
-
5
-
-
84860339685
-
Recognition of DNA damage by XPC coincides with disruption of the XPC-RAD23 complex
-
Bergink S, Toussaint W, Luijsterburg MS, Dinant C, Alek-seev S, Hoeijmakers JH, Dantuma NP, Houtsmuller AB, Ermeulen W.2012.Recognition of DNA damage by XPC coincides with disruption of the XPC-RAD23 complex. J Cell Biol 196: 681-688.
-
(2012)
J Cell Biol
, vol.196
, pp. 681-688
-
-
Bergink, S.1
Toussaint, W.2
Luijsterburg, M.S.3
Dinant, C.4
Alek-Seev, S.5
Hoeijmakers, J.H.6
Dantuma, N.P.7
Houtsmuller, A.B.8
Ermeulen, W.9
-
6
-
-
0001408659
-
Release of ultraviolet light-induced thymine dimers from DNA in E coli K-12
-
Boyce RP, Howard-Flanders P. 1964. Release of ultraviolet light-induced thymine dimers from DNA in E. coli K-12. Proc Natl Acad Sci 51: 293-300.
-
(1964)
Proc Natl Acad Sci
, vol.51
, pp. 293-300
-
-
Boyce, R.P.1
Howard-Flanders, P.2
-
7
-
-
33845575990
-
Biochemical and structural domain analysis of xe-roderma pigmentosum complementation group C protein
-
Bunick CG, Miller MR, Fuller BE, Fanning E, Chazin WJ. 2006. Biochemical and structural domain analysis of xe-roderma pigmentosum complementation group C protein. Biochemistry 45: 14965-14979.
-
(2006)
Biochemistry
, vol.45
, pp. 14965-14979
-
-
Bunick, C.G.1
Miller, M.R.2
Fuller, B.E.3
Fanning, E.4
Chazin, W.J.5
-
8
-
-
23944515285
-
DNA quality control by conformational readout on the undamaged strand of the double helix
-
Buterin T, Meyer C, Giese B, Naegeli H. 2005. DNA quality control by conformational readout on the undamaged strand of the double helix. Chem Biol 12: 913-922.
-
(2005)
Chem Biol
, vol.12
, pp. 913-922
-
-
Buterin, T.1
Meyer, C.2
Giese, B.3
Naegeli, H.4
-
9
-
-
77954759002
-
Distant neighbor base sequence context effects in human nucleotide excision repair of a benzo[a]pyrene-derived DNA lesion
-
Cai Y, Kropachev K, Xu R, Tang Y, Kolbanovskii M, Kolba-novskii A, Amin S, Patel DJ, Broyde S, Geacintov NE. 2010. Distant neighbor base sequence context effects in human nucleotide excision repair of a benzo[a]pyrene-derived DNA lesion. J Mol Biol 399: 397-409.
-
(2010)
J Mol Biol
, vol.399
, pp. 397-409
-
-
Cai, Y.1
Kropachev, K.2
Xu, R.3
Tang, Y.4
Kolbanovskii, M.5
Kolba-Novskii, A.6
Amin, S.7
Patel, D.J.8
Broyde, S.9
Geacintov, N.E.10
-
10
-
-
33644812489
-
Recognition of helical kinks by xeroderma pigmen-tosum group A protein triggers DNA excision repair
-
Camenisch U, Dip R, Schumacher SB, Schuler B, Naegeli H. 2006. Recognition of helical kinks by xeroderma pigmen-tosum group A protein triggers DNA excision repair. Nat Struct Mol Biol 13: 278-284.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 278-284
-
-
Camenisch, U.1
Dip, R.2
Schumacher, S.B.3
Schuler, B.4
Naegeli, H.5
-
11
-
-
69249202311
-
Two-stage dynamic DNA quality check by xeroderma pigmentosum group C protein
-
Camenisch U, Trautlein D, Clement FC, Fei J, Leitenstorfer A, Ferrando-May E, Naegeli H. 2009. Two-stage dynamic DNA quality check by xeroderma pigmentosum group C protein. EMBO J 28: 2387-2399.
-
(2009)
EMBO J
, vol.28
, pp. 2387-2399
-
-
Camenisch, U.1
Trautlein, D.2
Clement, F.C.3
Fei, J.4
Leitenstorfer, A.5
Ferrando-May, E.6
Naegeli, H.7
-
12
-
-
0014421995
-
Defective repair replication of DNA in xeroderma pigmentosum
-
Cleaver JE. 1968. Defective repair replication of DNA in xeroderma pigmentosum. Nature 218: 652-656.
-
(1968)
Nature
, vol.218
, pp. 652-656
-
-
Cleaver, J.E.1
-
13
-
-
30744438055
-
P8/TTD-A as a repair-specific TFIIH subunit
-
Coin F, Proietti De Santis L, Nardo T, Zlobinskaya O, Stefa-nini M, Egly JM. 2006. p8/TTD-A as a repair-specific TFIIH subunit. Mol Cell 21: 215-226.
-
(2006)
Mol Cell
, vol.21
, pp. 215-226
-
-
Coin, F.1
Proietti De Santis, L.2
Nardo, T.3
Zlobinskaya, O.4
Stefa-Nini, M.5
Egly, J.M.6
-
14
-
-
34247513888
-
Distinct roles for the XPB/p52 and XPD/p44 sub complexes of TFIIH in damaged DNA opening during nucleotide excision repair
-
Coin F, Oksenych V, Egly JM. 2007. Distinct roles for the XPB/p52 and XPD/p44 sub complexes of TFIIH in damaged DNA opening during nucleotide excision repair. Mol Cell 26: 245-256.
-
(2007)
Mol Cell
, vol.26
, pp. 245-256
-
-
Coin, F.1
Oksenych, V.2
Egly, J.M.3
-
15
-
-
46349091030
-
Nucleotide excision repair driven by the dissociation of CAK from TFIIH
-
Coin F, Oksenych V, Mocquet V, Groh S, Blattner C, Egly JM. 2008. Nucleotide excision repair driven by the dissociation of CAK from TFIIH. Mol Cell 31: 9-20.
-
(2008)
Mol Cell
, vol.31
, pp. 9-20
-
-
Coin, F.1
Oksenych, V.2
Mocquet, V.3
Groh, S.4
Blattner, C.5
Egly, J.M.6
-
16
-
-
84861457511
-
TFIIH: When transcription met DNA repair
-
Compe E, Egly JM. 2012. TFIIH: When transcription met DNA repair. Nat Rev Mol Cell Biol 13: 343-354.
-
(2012)
Nat Rev Mol Cell Biol
, vol.13
, pp. 343-354
-
-
Compe, E.1
Egly, J.M.2
-
17
-
-
0033605159
-
Conserved residues of human XPG protein important for nuclease activity and func-tioninnucleotide excision repair
-
Constantinou A, Gunz D, Evans E, Lalle P, Bates PA, Wood RD, Clarkson SG. 1999. Conserved residues of human XPG protein important for nuclease activity and func-tioninnucleotide excision repair. J Biol Chem 274: 5637-5648.
-
(1999)
J Biol Chem
, vol.274
, pp. 5637-5648
-
-
Constantinou, A.1
Gunz, D.2
Evans, E.3
Lalle, P.4
Bates, P.A.5
Wood, R.D.6
Clarkson, S.G.7
-
18
-
-
0032529167
-
DNA-binding polarity of human replication protein A positions nucleases in nucleotide excision repair
-
De Laat WL, Appeldoorn E, Sugasawa K, Weterings E, Jaspers NG, Hoeijmakers JH. 1998. DNA-binding polarity of human replication protein A positions nucleases in nucleotide excision repair. Genes Dev 12: 2598-2609.
-
(1998)
Genes Dev
, vol.12
, pp. 2598-2609
-
-
De Laat, W.L.1
Appeldoorn, E.2
Sugasawa, K.3
Weterings, E.4
Jaspers, N.G.5
Hoeijmakers, J.H.6
-
19
-
-
0015516045
-
Genetic heterogeneity of xeroderma pigmentosum demonstrated by somatic cell hybridization
-
De Weerd-Kastelein EA, Keijzer W, Bootsma D. 1972. Genetic heterogeneity of xeroderma pigmentosum demonstrated by somatic cell hybridization. Nat New Biol 238: 80-83.
-
(1972)
Nat New Biol
, vol.238
, pp. 80-83
-
-
De Weerd-Kastelein, E.A.1
Keijzer, W.2
Bootsma, D.3
-
20
-
-
84857041145
-
Shining a light on xero-derma pigmentosum
-
Di Giovanna JJ, Kraemer KH. 2012. Shining a light on xero-derma pigmentosum. J Invest Dermatol 132: 785-796.
-
(2012)
J Invest Dermatol
, vol.132
, pp. 785-796
-
-
Di Giovanna, J.J.1
Kraemer, K.H.2
-
21
-
-
14844300809
-
The spacer region of XPG mediates recruitment to nucleotide excision repair complexes and determines substrate specificity
-
Dunand-Sauthier I, Hohl M, Thorel F, Jaquier-Gubler P, Clarkson SG, Schärer OD. 2005. The spacer region of XPG mediates recruitment to nucleotide excision repair complexes and determines substrate specificity. J Biol Chem 280: 7030-7037.
-
(2005)
J Biol Chem
, vol.280
, pp. 7030-7037
-
-
Dunand-Sauthier, I.1
Hohl, M.2
Thorel, F.3
Jaquier-Gubler, P.4
Clarkson, S.G.5
Schärer, O.D.6
-
22
-
-
0031013308
-
Open complex formation around a lesion during nucleotide excision repair provides a structure for cleavage by human XPG protein
-
Evans E, Fellows J, Coffer A, Wood RD. 1997a. Open complex formation around a lesion during nucleotide excision repair provides a structure for cleavage by human XPG protein. Embo J 16: 625-638.
-
(1997)
Embo J
, vol.16
, pp. 625-638
-
-
Evans, E.1
Fellows, J.2
Coffer, A.3
Wood, R.D.4
-
23
-
-
0030732132
-
Mechanism of open complex and dual incision formation by human nucleotide excision repair factors
-
Evans E, Moggs JG, Hwang JR, Egly JM, Wood RD. 1997b. Mechanism of open complex and dual incision formation by human nucleotide excision repair factors. Embo J 16: 6559-6573.
-
(1997)
Embo J
, vol.16
, pp. 6559-6573
-
-
Evans, E.1
Moggs, J.G.2
Hwang, J.R.3
Egly, J.M.4
Wood, R.D.5
-
24
-
-
79960343567
-
Regulation of en-donuclease activity in human nucleotide excision repair
-
Fagbemi AF, Orelli B, Schärer OD. 2011. Regulation of en-donuclease activity in human nucleotide excision repair. DNA Repair (Amst) 10: 722-729.
-
(2011)
DNA Repair (Amst)
, vol.10
, pp. 722-729
-
-
Fagbemi, A.F.1
Orelli, B.2
Schärer, O.D.3
-
25
-
-
77955501963
-
SIRT1 regulates UV-induced DNA repair through deacetylating XPA
-
Fan W, Luo J. 2010. SIRT1 regulates UV-induced DNA repair through deacetylating XPA. Mol Cell 39: 247-258.
-
(2010)
Mol Cell
, vol.39
, pp. 247-258
-
-
Fan, W.1
Luo, J.2
-
26
-
-
84867693856
-
Structure and conformational change of a replication protein A heterotrimer bound to ssDNA
-
Fan J, Pavletich NP. 2012. Structure and conformational change of a replication protein A heterotrimer bound to ssDNA. Genes Dev 26: 2337-2347.
-
(2012)
Genes Dev
, vol.26
, pp. 2337-2347
-
-
Fan, J.1
Pavletich, N.P.2
-
27
-
-
33645988522
-
Conserved XPB core structure and motifs for DNA unwinding: Implications for pathway selection of transcription or excision repair
-
Fan L, Arvai AS, Cooper PK, Iwai S, Hanaoka F, Tainer JA. 2006. Conserved XPB core structure and motifs for DNA unwinding: Implications for pathway selection of transcription or excision repair. Mol Cell 22: 27-37.
-
(2006)
Mol Cell
, vol.22
, pp. 27-37
-
-
Fan, L.1
Arvai, A.S.2
Cooper, P.K.3
Iwai, S.4
Hanaoka, F.5
Tainer, J.A.6
-
28
-
-
44149094083
-
XPD helicase structures and activities: Insights into the cancer and aging phenotypes from XPD mutations
-
Fan L, Fuss JO, Cheng QJ, Arvai AS, Hammel M, Roberts VA, Cooper PK, Tainer JA. 2008. XPD helicase structures and activities: Insights into the cancer and aging phenotypes from XPD mutations. Cell 133: 789-800.
-
(2008)
Cell
, vol.133
, pp. 789-800
-
-
Fan, L.1
Fuss, J.O.2
Cheng, Q.J.3
Arvai, A.S.4
Hammel, M.5
Roberts, V.A.6
Cooper, P.K.7
Tainer, J.A.8
-
29
-
-
80055046325
-
Regulation of nucleotide excision repair by UV-DDB: Prioritization of damage recognition to internu-cleosomal DNA
-
Fei J, Kaczmarek N, Luch A, Glas A, Carell T, Naegeli H. 2011. Regulation of nucleotide excision repair by UV-DDB: Prioritization of damage recognition to internu-cleosomal DNA. PLoS Biol 9: e1001183.
-
(2011)
PLoS Biol
, vol.9
-
-
Fei, J.1
Kaczmarek, N.2
Luch, A.3
Glas, A.4
Carell, T.5
Naegeli, H.6
-
30
-
-
81855227619
-
The molecular basis of CRL4DDB2/CSA ubiquitin ligase architecture, targeting, and activation
-
Fischer ES, Scrima A, Bohm K, Matsumoto S, Lingaraju GM, Faty M, Yasuda T, Cavadini S, Wakasugi M, Hanaoka F, et al. 2011. The molecular basis of CRL4DDB2/CSA ubiquitin ligase architecture, targeting, and activation. Cell 147: 1024-1039.
-
(2011)
Cell
, vol.147
, pp. 1024-1039
-
-
Fischer, E.S.1
Scrima, A.2
Bohm, K.3
Matsumoto, S.4
Lingaraju, G.M.5
Faty, M.6
Yasuda, T.7
Cavadini, S.8
Wakasugi, M.9
Hanaoka, F.10
-
31
-
-
0345306615
-
In vivo recruitment of XPC to UV-induced cyclobutane pyrim-idine dimers by the DDB2 gene product
-
Fitch ME, Nakajima S, Yasui A, Ford JM. 2003. In vivo recruitment of XPC to UV-induced cyclobutane pyrim-idine dimers by the DDB2 gene product. J Biol Chem 278: 46906-46910.
-
(2003)
J Biol Chem
, vol.278
, pp. 46906-46910
-
-
Fitch, M.E.1
Nakajima, S.2
Yasui, A.3
Ford, J.M.4
-
32
-
-
34247482968
-
DNA repair and transcriptional deficiencies caused by mutations in the Drosophila p52 subunit of TFIIH generate developmental defects and chromosome fragility
-
Fregoso M, Laine JP, Aguilar-Fuentes J, Mocquet V, Reynaud E, Coin F, Egly JM, Zurita M. 2007. DNA repair and transcriptional deficiencies caused by mutations in the Drosophila p52 subunit of TFIIH generate developmental defects and chromosome fragility. Mol Cell Biol 27: 3640-3650.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 3640-3650
-
-
Fregoso, M.1
Laine, J.P.2
Aguilar-Fuentes, J.3
Mocquet, V.4
Reynaud, E.5
Coin, F.6
Egly, J.M.7
Zurita, M.8
-
33
-
-
0004228157
-
-
ASM Press, Washington, DC
-
Friedberg EC, Walker GC, Siede W, Wood RD, Schultz RA, Ellenberger T. 2005. DNA repair and mutagenesis. ASM Press, Washington, DC.
-
(2005)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
Wood, R.D.4
Schultz, R.A.5
Ellenberger, T.6
-
34
-
-
0030595338
-
Chromatin assembly coupled to DNA repair: A new role for chromatin assembly factor I
-
Gaillard PH, Martini EM, Kaufman PD, Stillman B, Mous-tacchi E, Almouzni G. 1996. Chromatin assembly coupled to DNA repair: A new role for chromatin assembly factor I. Cell 86: 887-896.
-
(1996)
Cell
, vol.86
, pp. 887-896
-
-
Gaillard, P.H.1
Martini, E.M.2
Kaufman, P.D.3
Stillman, B.4
Mous-Tacchi, E.5
Almouzni, G.6
-
35
-
-
0030710190
-
Initiation and bidirectional propagation of chromatin assembly from a target site for nucleotide excision repair
-
Gaillard PH, Moggs JG, Roche DM, Quivy JP, Becker PB, Wood RD, Almouzni G. 1997. Initiation and bidirectional propagation of chromatin assembly from a target site for nucleotide excision repair. EMBO J 16: 6281-6289.
-
(1997)
EMBO J
, vol.16
, pp. 6281-6289
-
-
Gaillard, P.H.1
Moggs, J.G.2
Roche, D.M.3
Quivy, J.P.4
Becker, P.B.5
Wood, R.D.6
Almouzni, G.7
-
36
-
-
1542320702
-
Physical and functional interactions between nucleotide excision repair and DNA damage checkpoint
-
Giannattasio M, Lazzaro F, Longhese MP, Plevani P, Muzi-Falconi M. 2004. Physical and functional interactions between nucleotide excision repair and DNA damage checkpoint. EMBO J 23: 429-438.
-
(2004)
EMBO J
, vol.23
, pp. 429-438
-
-
Giannattasio, M.1
Lazzaro, F.2
Longhese, M.P.3
Plevani, P.4
Muzi-Falconi, M.5
-
37
-
-
77957375149
-
Exo1 competes with repair synthesis, converts NER intermediates to long ssDNA gaps, and promotes checkpoint activation
-
Giannattasio M, Follonier C, Tourriere H, Puddu F, Lazzaro F, Pasero P, Lopes M, Plevani P, Muzi-Falconi M. 2010. Exo1 competes with repair synthesis, converts NER intermediates to long ssDNA gaps, and promotes checkpoint activation. Mol Cell 40: 50-62.
-
(2010)
Mol Cell
, vol.40
, pp. 50-62
-
-
Giannattasio, M.1
Follonier, C.2
Tourriere, H.3
Puddu, F.4
Lazzaro, F.5
Pasero, P.6
Lopes, M.7
Plevani, P.8
Muzi-Falconi, M.9
-
38
-
-
3042781670
-
A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodys-trophy group A
-
Giglia-Mari G, Coin F, Ranish JA, Hoogstraten D, Theil A, Wijgers N, Jaspers NG, Raams A, Argentini M, van der Spek PJ, et al. 2004. A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodys-trophy group A. Nat Genet 36: 714-719.
-
(2004)
Nat Genet
, vol.36
, pp. 714-719
-
-
Giglia-Mari, G.1
Coin, F.2
Ranish, J.A.3
Hoogstraten, D.4
Theil, A.5
Wijgers, N.6
Jaspers, N.G.7
Raams, A.8
Argentini, M.9
van der Spek, P.J.10
-
39
-
-
33745199653
-
Dynamic interaction of TTDA with TFIIH is stabilized by nucleotide excision repair in living cells
-
Giglia-Mari G, Miquel C, Theil AF, Mari PO, Hoogstraten D, Ng JM, Dinant C, Hoeijmakers JH, Vermeulen W. 2006. Dynamic interaction of TTDA with TFIIH is stabilized by nucleotide excision repair in living cells. PLoS Biol 4: e156.
-
(2006)
PLoS Biol
, vol.4
-
-
Giglia-Mari, G.1
Miquel, C.2
Theil, A.F.3
Mari, P.O.4
Hoogstraten, D.5
Ng, J.M.6
Dinant, C.7
Hoeijmakers, J.H.8
Vermeulen, W.9
-
40
-
-
32644450616
-
Molecular mechanisms of mammalian global genome nucleotide excision repair
-
Gillet LC, Schärer OD. 2006. Molecular mechanisms of mammalian global genome nucleotide excision repair. Chem Rev 106: 253-276.
-
(2006)
Chem Rev
, vol.106
, pp. 253-276
-
-
Gillet, L.C.1
Schärer, O.D.2
-
41
-
-
84869077981
-
Nu-cleotide excision repair is associated with the replisome and its efficiency depends on adirect interaction between XPA and PCNA
-
Gilljam KM, Muller R, Liabakk NB, Otterlei M. 2012. Nu-cleotide excision repair is associated with the replisome and its efficiency depends on adirect interaction between XPA and PCNA. PloS ONE 7: e49199.
-
(2012)
PloS ONE
, vol.7
-
-
Gilljam, K.M.1
Muller, R.2
Liabakk, N.B.3
Otterlei, M.4
-
42
-
-
33749520485
-
Rad4-Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair
-
Gong F, Fahy D, Smerdon MJ. 2006. Rad4-Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair. Nat Struct Mol Biol 13: 902-907.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 902-907
-
-
Gong, F.1
Fahy, D.2
Smerdon, M.J.3
-
43
-
-
84856699863
-
Unpairing and gating: Sequence-independent substrate recognition by FEN superfamily nucleases
-
Grasby JA, Finger LD, Tsutakawa SE, Atack JM, Tainer JA. 2012. Unpairing and gating: Sequence-independent substrate recognition by FEN superfamily nucleases. Trends Biochem Sci 37: 74-84.
-
(2012)
Trends Biochem Sci
, vol.37
, pp. 74-84
-
-
Grasby, J.A.1
Finger, L.D.2
Tsutakawa, S.E.3
Atack, J.M.4
Tainer, J.A.5
-
44
-
-
0141530885
-
Local action of the chroma-tin assembly factor CAF-1 at sites of nucleotide excision repair in vivo
-
Green CM, Almouzni G. 2003. Local action of the chroma-tin assembly factor CAF-1 at sites of nucleotide excision repair in vivo. EMBO J 22: 5163-5174.
-
(2003)
EMBO J
, vol.22
, pp. 5163-5174
-
-
Green, C.M.1
Almouzni, G.2
-
45
-
-
0037509859
-
The ubiquitin ligase activity in the DDB2 and CSA complexes is differentially regulated by the COP9 signalosome in response to DNA damage
-
Groisman R, Polanowska J, Kuraoka I, Sawada J, Saijo M, Drapkin R, Kisselev AF, Tanaka K, Nakatani Y. 2003. The ubiquitin ligase activity in the DDB2 and CSA complexes is differentially regulated by the COP9 signalosome in response to DNA damage. Cell 113: 357-367.
-
(2003)
Cell
, vol.113
, pp. 357-367
-
-
Groisman, R.1
Polanowska, J.2
Kuraoka, I.3
Sawada, J.4
Saijo, M.5
Drapkin, R.6
Kisselev, A.F.7
Tanaka, K.8
Nakatani, Y.9
-
46
-
-
48549085044
-
The cullin 4B-based UV-damaged DNA-binding protein ligase binds to UV-damaged chromatin and ubiquitinates histone H2A
-
Guerrero-Santoro J, Kapetanaki MG, Hsieh CL, Gorbachin-sky I, Levine AS, Rapic-Otrin V. 2008. The cullin 4B-based UV-damaged DNA-binding protein ligase binds to UV-damaged chromatin and ubiquitinates histone H2A. Cancer Res 68: 5014-5022.
-
(2008)
Cancer Res
, vol.68
, pp. 5014-5022
-
-
Guerrero-Santoro, J.1
Kapetanaki, M.G.2
Hsieh, C.L.3
Gorbachin-Sky, I.4
Levine, A.S.5
Rapic-Otrin, V.6
-
47
-
-
0029840823
-
Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism
-
Gunz D, Hess MT, Naegeli H. 1996. Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism. J Biol Chem 271: 25089-25098.
-
(1996)
J Biol Chem
, vol.271
, pp. 25089-25098
-
-
Gunz, D.1
Hess, M.T.2
Naegeli, H.3
-
48
-
-
36148951013
-
H2AX phosphorylation after UV irradiation is triggered by DNA repair intermediates and is mediated by the ATR kinase
-
Hanasoge S, Ljungman M. 2007. H2AX phosphorylation after UV irradiation is triggered by DNA repair intermediates and is mediated by the ATR kinase. Carcinogenesis 28: 2298-2304.
-
(2007)
Carcinogenesis
, vol.28
, pp. 2298-2304
-
-
Hanasoge, S.1
Ljungman, M.2
-
49
-
-
56749157389
-
Transcription-coupled DNA repair: Two decades of progress and surprises
-
Hanawalt PC, Spivak G. 2008. Transcription-coupled DNA repair: Two decades of progress and surprises. Nat Rev Mol Cell Biol 9: 958-970.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 958-970
-
-
Hanawalt, P.C.1
Spivak, G.2
-
50
-
-
0036785614
-
The SWI/SNF chromatin-remod-eling factor stimulates repair by human excision nuclease in the mononucleosome core particle
-
Hara R, Sancar A. 2002. The SWI/SNF chromatin-remod-eling factor stimulates repair by human excision nuclease in the mononucleosome core particle. Mol Cell Biol 22: 6779-6787.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 6779-6787
-
-
Hara, R.1
Sancar, A.2
-
51
-
-
0034461931
-
DNA damage in the nucleo-some core is refractory to repair by human excision nu-clease
-
Hara R, Mo J, Sancar A. 2000. DNA damage in the nucleo-some core is refractory to repair by human excision nu-clease. Mol Cell Biol 20: 9173-9181.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 9173-9181
-
-
Hara, R.1
Mo, J.2
Sancar, A.3
-
52
-
-
12644312174
-
Bipartite substrate discrimination by human nucleotide excision repair
-
Hess MT, Schwitter U, Petretta M, Giese B, Naegeli H. 1997. Bipartite substrate discrimination by human nucleotide excision repair. Proc Natl Acad Sci 94: 6664-6669.
-
(1997)
Proc Natl Acad Sci
, vol.94
, pp. 6664-6669
-
-
Hess, M.T.1
Schwitter, U.2
Petretta, M.3
Giese, B.4
Naegeli, H.5
-
53
-
-
0037628995
-
Structural determinants for substrate binding and catalysis by the structure-specific endonuclease XPG
-
Hohl M, Thorel F, Clarkson SG, Schärer OD. 2003. Structural determinants for substrate binding and catalysis by the structure-specific endonuclease XPG. J Biol Chem 278: 19500-19508.
-
(2003)
J Biol Chem
, vol.278
, pp. 19500-19508
-
-
Hohl, M.1
Thorel, F.2
Clarkson, S.G.3
Schärer, O.D.4
-
54
-
-
34250657429
-
Domain swapping between FEN-1 and XPG defines regions in XPG that mediate nucleotide excision repair activity and substrate specificity
-
Hohl M, Dunand-Sauthier I, Staresincic L, Jaquier-Gubler P, Thorel F, Modesti M, Clarkson SG, Schärer OD. 2007. Domain swapping between FEN-1 and XPG defines regions in XPG that mediate nucleotide excision repair activity and substrate specificity. Nucleic Acids Res 35: 3053-3063.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3053-3063
-
-
Hohl, M.1
Dunand-Sauthier, I.2
Staresincic, L.3
Jaquier-Gubler, P.4
Thorel, F.5
Modesti, M.6
Clarkson, S.G.7
Schärer, O.D.8
-
55
-
-
53349128176
-
Versatile DNA damage detection by the global genome nucleotide excision repair protein XPC
-
Hoogstraten D, Bergink S, Ng JM, Verbiest VH, Luijsterburg MS, Geverts B, Raams A, Dinant C, Hoeijmakers JH, Vermeulen W, et al. 2008. Versatile DNA damage detection by the global genome nucleotide excision repair protein XPC. J Cell Sci 121: 2850-2859.
-
(2008)
J Cell Sci
, vol.121
, pp. 2850-2859
-
-
Hoogstraten, D.1
Bergink, S.2
Ng, J.M.3
Verbiest, V.H.4
Luijsterburg, M.S.5
Geverts, B.6
Raams, A.7
Dinant, C.8
Hoeijmakers, J.H.9
Vermeulen, W.10
-
56
-
-
0033532342
-
Action of DNA repair endonuclease ERCC1/XPF in living cells
-
Houtsmuller AB, Rademakers S, Nigg AL, Hoogstraten D, Hoeijmakers JH, Vermeulen W. 1999. Action of DNA repair endonuclease ERCC1/XPF in living cells. Science 284: 958-961.
-
(1999)
Science
, vol.284
, pp. 958-961
-
-
Houtsmuller, A.B.1
Rademakers, S.2
Nigg, A.L.3
Hoogstraten, D.4
Hoeijmakers, J.H.5
Vermeulen, W.6
-
58
-
-
0027944087
-
Substrate spectrum of human excinuclease: Repair of abasic sites, methylated bases, mismatches, and bulky adducts
-
Huang JC, Hsu DS, Kazantsev A, Sancar A. 1994. Substrate spectrum of human excinuclease: Repair of abasic sites, methylated bases, mismatches, and bulky adducts. Proc Natl Acad Sci 91: 12213-12217.
-
(1994)
Proc Natl Acad Sci
, vol.91
, pp. 12213-12217
-
-
Huang, J.C.1
Hsu, D.S.2
Kazantsev, A.3
Sancar, A.4
-
59
-
-
34247256517
-
XPG stabilizes TFIIH, allowing transactivationofnuclear receptors: Implications for Cockayne syndrome in XP-G/CS patients
-
Ito S, Kuraoka I, Chymkowitch P, Compe E, Takedachi A, Ishigami C, Coin F, Egly JM, Tanaka K. 2007. XPG stabilizes TFIIH, allowing transactivationofnuclear receptors: Implications for Cockayne syndrome in XP-G/CS patients. Mol Cell 26: 231-243.
-
(2007)
Mol Cell
, vol.26
, pp. 231-243
-
-
Ito, S.1
Kuraoka, I.2
Chymkowitch, P.3
Compe, E.4
Takedachi, A.5
Ishigami, C.6
Coin, F.7
Egly, J.M.8
Tanaka, K.9
-
60
-
-
78049241459
-
INO80 chromatin remodeling complex promotes the removal of UV lesions by the nucleotide excision repair pathway
-
Jiang Y, Wang X, Bao S, Guo R, Johnson DG, Shen X, Li L. 2010. INO80 chromatin remodeling complex promotes the removal of UV lesions by the nucleotide excision repair pathway. Proc Natl Acad Sci 107: 17274-17279.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 17274-17279
-
-
Jiang, Y.1
Wang, X.2
Bao, S.3
Guo, R.4
Johnson, D.G.5
Shen, X.6
Li, L.7
-
61
-
-
77950422142
-
Circadian control of XPA and excision repairof cisplatin-DNA damage by cryptochrome and HERC2 ubiquitin ligase
-
Kang TH, Lindsey-Boltz LA, Reardon JT, Sancar A. 2010. Circadian control of XPA and excision repairof cisplatin-DNA damage by cryptochrome and HERC2 ubiquitin ligase. Proc Natl Acad Sci 107: 4890-4895.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 4890-4895
-
-
Kang, T.H.1
Lindsey-Boltz, L.A.2
Reardon, J.T.3
Sancar, A.4
-
62
-
-
79955606995
-
Regulation of nucle-otide excision repair activity by transcriptional and post-transcriptional control of the XPA protein
-
Kang TH, Reardon JT, Sancar A. 2011. Regulation of nucle-otide excision repair activity by transcriptional and post-transcriptional control of the XPA protein. Nucleic Acids Res 39: 3176-3187.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3176-3187
-
-
Kang, T.H.1
Reardon, J.T.2
Sancar, A.3
-
63
-
-
33644536070
-
The DDB1-CU-L4ADDB2 ubiquitin ligase is deficient in xeroderma pig-mentosum group E and targets histone H2A at UV-dam-aged DNA sites
-
Kapetanaki MG, Guerrero-Santoro J, Bisi DC, Hsieh CL, Rapic-Otrin V, Levine AS. 2006. The DDB1-CU-L4ADDB2 ubiquitin ligase is deficient in xeroderma pig-mentosum group E and targets histone H2A at UV-dam-aged DNA sites. Proc Natl Acad Sci 103: 2588-2593.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 2588-2593
-
-
Kapetanaki, M.G.1
Guerrero-Santoro, J.2
Bisi, D.C.3
Hsieh, C.L.4
Rapic-Otrin, V.5
Levine, A.S.6
-
64
-
-
84863306922
-
Mechanism ofrelease and fate ofexcised oligonucleotides during nucleotide excision repair
-
Kemp MG, Reardon JT, Lindsey-Boltz LA, Sancar A. 2012. Mechanism ofrelease and fate ofexcised oligonucleotides during nucleotide excision repair. J Biol Chem 287: 22889-22899.
-
(2012)
J Biol Chem
, vol.287
, pp. 22889-22899
-
-
Kemp, M.G.1
Reardon, J.T.2
Lindsey-Boltz, L.A.3
Sancar, A.4
-
65
-
-
84869218112
-
Poly(ADP-ribose) contributes to an association between poly-(ADP-ribose) polymerase-1 and xeroderma pigmento-sum complementation group A in nucleotide excision repair
-
King BS, Cooper KL, Liu KJ, Hudson LG. 2012. Poly(ADP-ribose) contributes to an association between poly-(ADP-ribose) polymerase-1 and xeroderma pigmento-sum complementation group A in nucleotide excision repair. J Biol Chem 287: 39824-39833.
-
(2012)
J Biol Chem
, vol.287
, pp. 39824-39833
-
-
King, B.S.1
Cooper, K.L.2
Liu, K.J.3
Hudson, L.G.4
-
67
-
-
78650435945
-
Localization of xeroderma pigmento-sum group A protein and replication protein A on damaged DNA in nucleotide excision repair
-
Krasikova YS, Rechkunova NI, Maltseva EA, Petruseva IO, Lavrik OI. 2010. Localization of xeroderma pigmento-sum group A protein and replication protein A on damaged DNA in nucleotide excision repair. Nucleic Acids Res 38: 8083-8094.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 8083-8094
-
-
Krasikova, Y.S.1
Rechkunova, N.I.2
Maltseva, E.A.3
Petruseva, I.O.4
Lavrik, O.I.5
-
68
-
-
84857195289
-
Functional and structural studies of the nucleotide excision repair helicase XPD suggest a polarity for DNA translocation
-
Kuper J, Wolski SC, Michels G, Kisker C. 2012. Functional and structural studies of the nucleotide excision repair helicase XPD suggest a polarity for DNA translocation. EMBO J 31: 494-502.
-
(2012)
EMBO J
, vol.31
, pp. 494-502
-
-
Kuper, J.1
Wolski, S.C.2
Michels, G.3
Kisker, C.4
-
70
-
-
84863857131
-
6-alkyl-guanines
-
6-alkyl-guanines. Mol Cell 47: 50-60.
-
(2012)
Mol Cell
, vol.47
, pp. 50-60
-
-
Latypov, V.F.1
Tubbs, J.L.2
Watson, A.J.3
Marriott, A.S.4
McGown, G.5
Thorncroft, M.6
Wilkinson, O.J.7
Senthong, P.8
Butt, A.9
Arvai, A.S.10
-
71
-
-
0942268166
-
DNA repair-deficient diseases, xeroder-ma pigmentosum, Cockayne syndrome and trichothio-dystrophy
-
Lehmann AR. 2003. DNA repair-deficient diseases, xeroder-ma pigmentosum, Cockayne syndrome and trichothio-dystrophy. Biochimie 85: 1101-1111.
-
(2003)
Biochimie
, vol.85
, pp. 1101-1111
-
-
Lehmann, A.R.1
-
72
-
-
79960347948
-
DNA polymerases and repair synthesis in NER in human cells
-
Lehmann AR. 2011. DNA polymerases and repair synthesis in NER in human cells. DNA Repair 10: 730-733.
-
(2011)
DNA Repair
, vol.10
, pp. 730-733
-
-
Lehmann, A.R.1
-
73
-
-
0028276805
-
Specific association between the human DNA repair proteins XPA and ERCC1
-
Li L, Elledge SJ, Peterson CA, Bales ES, Legerski RJ. 1994. Specific association between the human DNA repair proteins XPA and ERCC1. Proc Natl Acad Sci 91: 5012-5016.
-
(1994)
Proc Natl Acad Sci
, vol.91
, pp. 5012-5016
-
-
Li, L.1
Elledge, S.J.2
Peterson, C.A.3
Bales, E.S.4
Legerski, R.J.5
-
74
-
-
0029129283
-
An interaction between the DNA repair factor XPA and replication protein A appears essential for nucleotide excision repair
-
Li L, Lu X, Peterson CA, Legerski RJ. 1995a. An interaction between the DNA repair factor XPA and replication protein A appears essential for nucleotide excision repair. Mol Cell Biol 15: 5396-5402.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 5396-5402
-
-
Li, L.1
Lu, X.2
Peterson, C.A.3
Legerski, R.J.4
-
75
-
-
0028934368
-
Mutations in XPA that prevent association with ERCC1 are defective in nucleotide excision repair
-
Li L, Peterson CA, Lu X, Legerski RJ. 1995b. Mutations in XPA that prevent association with ERCC1 are defective in nucleotide excision repair. Mol Cell Biol 15: 1993-1998.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 1993-1998
-
-
Li, L.1
Peterson, C.A.2
Lu, X.3
Legerski, R.J.4
-
76
-
-
43949110271
-
Structure of the DNA repair helicase XPD
-
Liu H, Rudolf J, Johnson KA, McMahon SA, Oke M, Carter L, McRobbie AM, Brown SE, Naismith JH, White MF. 2008. Structure of the DNA repair helicase XPD. Cell 133: 801-812.
-
(2008)
Cell
, vol.133
, pp. 801-812
-
-
Liu, H.1
Rudolf, J.2
Johnson, K.A.3
McMahon, S.A.4
Oke, M.5
Carter, L.6
McRobbie, A.M.7
Brown, S.E.8
Naismith, J.H.9
White, M.F.10
-
77
-
-
79960372834
-
Probing for DNA damage with beta-hairpins: Similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro
-
Liu Y, Reeves D, Kropachev K, Cai Y, Ding S, Kolbanovskiy M, Kolbanovskiy A, Bolton JL, Broyde S, Van Houten B, et al. 2011. Probing for DNA damage with beta-hairpins: Similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro. DNA Repair (Amst) 10: 684-696.
-
(2011)
DNA Repair (Amst)
, vol.10
, pp. 684-696
-
-
Liu, Y.1
Reeves, D.2
Kropachev, K.3
Cai, Y.4
Ding, S.5
Kolbanovskiy, M.6
Kolbanovskiy, A.7
Bolton, J.L.8
Broyde, S.9
van Houten, B.10
-
78
-
-
84861939507
-
DDB2 promotes chromatin decondensation at UV-induced DNA damage
-
Luijsterburg MS, Lindh M, Acs K, Vrouwe MG, Pines A, van Attikum H, Mullenders LH, Dantuma NP. 2012. DDB2 promotes chromatin decondensation at UV-induced DNA damage. J Cell Biol 197: 267-281.
-
(2012)
J Cell Biol
, vol.197
, pp. 267-281
-
-
Luijsterburg, M.S.1
Lindh, M.2
Acs, K.3
Vrouwe, M.G.4
Pines, A.5
van Attikum, H.6
Mullenders, L.H.7
Dantuma, N.P.8
-
79
-
-
34247381126
-
An aromatic sensor with aversion to damaged strands confers versatility to DNA repair
-
Maillard O, Solyom S, Naegeli H. 2007. An aromatic sensor with aversion to damaged strands confers versatility to DNA repair. PLoS Biol 5: e79.
-
(2007)
PLoS Biol
, vol.5
-
-
Maillard, O.1
Solyom, S.2
Naegeli, H.3
-
80
-
-
33751256575
-
DNA nucleotide excision repair-dependent signaling to checkpoint activation
-
Marini F, Nardo T, Giannattasio M, Minuzzo M, Stefanini M, Plevani P, Muzi Falconi M. 2006. DNA nucleotide excision repair-dependent signaling to checkpoint activation. Proc Natl Acad Sci 103: 17325-17330.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 17325-17330
-
-
Marini, F.1
Nardo, T.2
Giannattasio, M.3
Minuzzo, M.4
Stefanini, M.5
Plevani, P.6
Muzi Falconi, M.7
-
81
-
-
70349944658
-
Nucleotide excision repair-induced H2A ubiq-uitination is dependent on MDC1 and RNF8 and reveals a universal DNA damage response
-
Marteijn JA, Bekker-Jensen S, Mailand N, Lans H, Schwert-man P, Gourdin AM, Dantuma NP, Lukas J, Vermeulen W. 2009. Nucleotide excision repair-induced H2A ubiq-uitination is dependent on MDC1 and RNF8 and reveals a universal DNA damage response. J Cell Biol 186: 835-847.
-
(2009)
J Cell Biol
, vol.186
, pp. 835-847
-
-
Marteijn, J.A.1
Bekker-Jensen, S.2
Mailand, N.3
Lans, H.4
Schwert-Man, P.5
Gourdin, A.M.6
Dantuma, N.P.7
Lukas, J.8
Vermeulen, W.9
-
82
-
-
33745607326
-
H2AX phosphorylation within the G1 phase after UV irradiation depends on nucleotide excision repair and not DNA double-strand breaks
-
Marti TM, Hefner E, Feeney L, Natale V, Cleaver JE. 2006. H2AX phosphorylation within the G1 phase after UV irradiation depends on nucleotide excision repair and not DNA double-strand breaks. Proc Natl Acad Sci 103: 9891-9896.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 9891-9896
-
-
Marti, T.M.1
Hefner, E.2
Feeney, L.3
Natale, V.4
Cleaver, J.E.5
-
83
-
-
78049274322
-
Strand- and site-specific DNA lesion demarcation by the xeroderma pigmentosum group D helicase
-
Mathieu N, Kaczmarek N, Naegeli H. 2010. Strand- and site-specific DNA lesion demarcation by the xeroderma pigmentosum group D helicase. Proc Natl Acad Sci 107: 17545-17550.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 17545-17550
-
-
Mathieu, N.1
Kaczmarek, N.2
Naegeli, H.3
-
84
-
-
84873408109
-
DNA quality control by a lesion sensor pocket of the xeroderma pigmentosum group Dhelicase subunit of TFIIH
-
Mathieu N, Kaczmarek N, Ruthemann P, Luch A, Naegeli H. 2013. DNA quality control by a lesion sensor pocket of the xeroderma pigmentosum group Dhelicase subunit of TFIIH. Curr Biol 23: 204-212.
-
(2013)
Curr Biol
, vol.23
, pp. 204-212
-
-
Mathieu, N.1
Kaczmarek, N.2
Ruthemann, P.3
Luch, A.4
Naegeli, H.5
-
85
-
-
0028942129
-
DNA repair protein XPA binds replication protein A (RPA)
-
Matsuda T, Saijo M, Kuraoka I, Kobayashi T, Nakatsu Y, Nagai A, Enjoji T, Masutani C, Sugasawa K, Hanaoka F, et al. 1995. DNA repair protein XPA binds replication protein A (RPA). J Biol Chem 270: 4152-4157.
-
(1995)
J Biol Chem
, vol.270
, pp. 4152-4157
-
-
Matsuda, T.1
Saijo, M.2
Kuraoka, I.3
Kobayashi, T.4
Nakatsu, Y.5
Nagai, A.6
Enjoji, T.7
Masutani, C.8
Sugasawa, K.9
Hanaoka, F.10
-
86
-
-
34247354227
-
Perturbed gap-filling synthesis in nucleotide excision repair causes histone H2AX phosphorylation in human quiescent cells
-
Matsumoto M, Yaginuma K, Igarashi A, Imura M, Hasegawa M, Iwabuchi K, Date T, Mori T, Ishizaki K, Yamashita K, et al. 2007. Perturbed gap-filling synthesis in nucleotide excision repair causes histone H2AX phosphorylation in human quiescent cells. J Cell Sci 120: 1104-1112.
-
(2007)
J Cell Sci
, vol.120
, pp. 1104-1112
-
-
Matsumoto, M.1
Yaginuma, K.2
Igarashi, A.3
Imura, M.4
Hasegawa, M.5
Iwabuchi, K.6
Date, T.7
Mori, T.8
Ishizaki, K.9
Yamashita, K.10
-
87
-
-
34948892722
-
Recognition of DNA damage by the Rad4 nucleotide excision repair protein
-
Min JH, Pavletich NP. 2007. Recognition of DNA damage by the Rad4 nucleotide excision repair protein. Nature 449: 570-575.
-
(2007)
Nature
, vol.449
, pp. 570-575
-
-
Min, J.H.1
Pavletich, N.P.2
-
88
-
-
0035796455
-
Double-check probing of DNA bending and unwinding by XPA-RPA: An architectural function in DNA repair
-
Missura M, Buterin T, Hindges R, Hubscher U, Kasparkova J, Brabec V, Naegeli H. 2001. Double-check probing of DNA bending and unwinding by XPA-RPA: An architectural function in DNA repair. Embo J 20: 3554-3564.
-
(2001)
Embo J
, vol.20
, pp. 3554-3564
-
-
Missura, M.1
Buterin, T.2
Hindges, R.3
Hubscher, U.4
Kasparkova, J.5
Brabec, V.6
Naegeli, H.7
-
89
-
-
34250795081
-
The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions
-
Mocquet V, Kropachev K, Kolbanovskiy M, Kolbanovskiy A, Tapias A, Cai Y, Broyde S, Geacintov NE, Egly JM. 2007. The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions. Embo J 26: 2923-2932.
-
(2007)
Embo J
, vol.26
, pp. 2923-2932
-
-
Mocquet, V.1
Kropachev, K.2
Kolbanovskiy, M.3
Kolbanovskiy, A.4
Tapias, A.5
Cai, Y.6
Broyde, S.7
Geacintov, N.E.8
Egly, J.M.9
-
90
-
-
38049000832
-
Sequential recruitment of the repair factors during NER: The role of XPG in initiating the resynthesis step
-
Mocquet V, Laine JP, Riedl T, Yajin Z, Lee MY, Egly JM. 2008. Sequential recruitment of the repair factors during NER: The role of XPG in initiating the resynthesis step. EMBO J 27: 155-167.
-
(2008)
EMBO J
, vol.27
, pp. 155-167
-
-
Mocquet, V.1
Laine, J.P.2
Riedl, T.3
Yajin, Z.4
Lee, M.Y.5
Egly, J.M.6
-
91
-
-
34447302016
-
Sealing of chromosomal DNA nicks during nucleotide excision repair requires XRCC1 and DNA ligase III a in a cell-cycle-specific manner
-
Moser J, Kool H, Giakzidis I, Caldecott K, Mullenders LH, Fousteri MI. 2007. Sealing of chromosomal DNA nicks during nucleotide excision repair requires XRCC1 and DNA ligase III a in a cell-cycle-specific manner. Mol Cell 27: 311-323.
-
(2007)
Mol Cell
, vol.27
, pp. 311-323
-
-
Moser, J.1
Kool, H.2
Giakzidis, I.3
Caldecott, K.4
Mullenders, L.H.5
Fousteri, M.I.6
-
92
-
-
0028896837
-
Reconstitution of human DNA repair excision nuclease in a highly defined system
-
Mu D, Park CH, Matsunaga T, Hsu DS, Reardon JT, Sancar A. 1995. Reconstitution of human DNA repair excision nuclease in a highly defined system. J Biol Chem 270: 2415-2418.
-
(1995)
J Biol Chem
, vol.270
, pp. 2415-2418
-
-
Mu, D.1
Park, C.H.2
Matsunaga, T.3
Hsu, D.S.4
Reardon, J.T.5
Sancar, A.6
-
93
-
-
84868133144
-
Nucle-otide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: Molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies
-
Mu H, Kropachev K, Wang L, Zhang L, Kolbanovskiy A, Kolbanovskiy M, Geacintov NE, Broyde S. 2012. Nucle-otide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: Molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies. Nucleic Acids Res 40: 9675-9690.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 9675-9690
-
-
Mu, H.1
Kropachev, K.2
Wang, L.3
Zhang, L.4
Kolbanovskiy, A.5
Kolbanovskiy, M.6
Geacintov, N.E.7
Broyde, S.8
-
94
-
-
0026536763
-
The DNA heli-case and adenosine triphosphatase activities of yeast Rad3 protein are inhibited by DNA damage. A potential mechanism for damage-specific recognition
-
Naegeli H, Bardwell L, Friedberg EC. 1992. The DNA heli-case and adenosine triphosphatase activities of yeast Rad3 protein are inhibited by DNA damage. A potential mechanism for damage-specific recognition. J Biol Chem 267: 392-398.
-
(1992)
J Biol Chem
, vol.267
, pp. 392-398
-
-
Naegeli, H.1
Bardwell, L.2
Friedberg, E.C.3
-
95
-
-
0038339144
-
A novel regulation mechanism of DNA repair by damage-induced and RAD23-dependent stabilization of xeroderma pig-mentosum group C protein
-
Ng JM, Vermeulen W, van der Horst GT, Bergink S, Suga-sawa K, Vrieling H, Hoeijmakers JH. 2003. A novel regulation mechanism of DNA repair by damage-induced and RAD23-dependent stabilization of xeroderma pig-mentosum group C protein. Genes Dev 17: 1630-1645.
-
(2003)
Genes Dev
, vol.17
, pp. 1630-1645
-
-
Ng, J.M.1
Vermeulen, W.2
van der Horst, G.T.3
Bergink, S.4
Suga-Sawa, K.5
Vrieling, H.6
Hoeijmakers, J.H.7
-
96
-
-
20744446570
-
Centrin 2 stimulates nu-cleotide excision repair by interacting with xeroderma pigmentosum group C protein
-
Nishi R, Okuda Y, Watanabe E, Mori T, Iwai S, Masutani C, Sugasawa K, Hanaoka F. 2005. Centrin 2 stimulates nu-cleotide excision repair by interacting with xeroderma pigmentosum group C protein. Mol Cell Biol 25: 5664-5674.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 5664-5674
-
-
Nishi, R.1
Okuda, Y.2
Watanabe, E.3
Mori, T.4
Iwai, S.5
Masutani, C.6
Sugasawa, K.7
Hanaoka, F.8
-
97
-
-
67349276614
-
UV-DDB-dependent regulation of nucleotide excision repair kinetics in living cells
-
Nishi R, Alekseev S, Dinant C, Hoogstraten D, Houtsmuller AB, Hoeijmakers JH, Vermeulen W, Hanaoka F, Sugasawa K. 2009. UV-DDB-dependent regulation of nucleotide excision repair kinetics in living cells. DNA Repair (Amst) 8: 767-776.
-
(2009)
DNA Repair (Amst)
, vol.8
, pp. 767-776
-
-
Nishi, R.1
Alekseev, S.2
Dinant, C.3
Hoogstraten, D.4
Houtsmuller, A.B.5
Hoeijmakers, J.H.6
Vermeulen, W.7
Hanaoka, F.8
Sugasawa, K.9
-
98
-
-
0030817140
-
DNA damage recognition by XPA protein promotes efficient recruitment of transcription factor II H
-
Nocentini S, Coin F, Saijo M, Tanaka K, Egly JM. 1997. DNA damage recognition by XPA protein promotes efficient recruitment of transcription factor II H. J Biol Chem 272: 22991-22994.
-
(1997)
J Biol Chem
, vol.272
, pp. 22991-22994
-
-
Nocentini, S.1
Coin, F.2
Saijo, M.3
Tanaka, K.4
Egly, J.M.5
-
99
-
-
79960383687
-
Mind the gap: Keeping UV lesions in check
-
Novarina D, Amara F, Lazzaro F, Plevani P, Muzi-Falconi M. 2011. Mind the gap: Keeping UV lesions in check. DNA Repair (Amst) 10: 751-759.
-
(2011)
DNA Repair (Amst)
, vol.10
, pp. 751-759
-
-
Novarina, D.1
Amara, F.2
Lazzaro, F.3
Plevani, P.4
Muzi-Falconi, M.5
-
100
-
-
33744789415
-
The Y-family DNA polymerase kappa (pol k) functions in mammalian nucleotide-exci-sion repair
-
Ogi T, Lehmann AR. 2006. The Y-family DNA polymerase kappa (pol k) functions in mammalian nucleotide-exci-sion repair. Nat Cell Biol 8: 640-642.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 640-642
-
-
Ogi, T.1
Lehmann, A.R.2
-
101
-
-
77649242633
-
Three DNA polymerases, recruited by different mechanisms, carry out NER repair synthesis in human cells
-
Ogi T, Limsirichaikul S, Overmeer RM, Volker M, Takenaka K, Cloney R, Nakazawa Y, Niimi A, Miki Y, Jaspers NG, et al. 2010. Three DNA polymerases, recruited by different mechanisms, carry out NER repair synthesis in human cells. Mol Cell 37: 714-727.
-
(2010)
Mol Cell
, vol.37
, pp. 714-727
-
-
Ogi, T.1
Limsirichaikul, S.2
Overmeer, R.M.3
Volker, M.4
Takenaka, K.5
Cloney, R.6
Nakazawa, Y.7
Niimi, A.8
Miki, Y.9
Jaspers, N.G.10
-
102
-
-
70350566800
-
Molecular insights into the recruitment of TFIIH to sites of DNA damage
-
Oksenych V, de Jesus BB, Zhovmer A, Egly JM, Coin F. 2009. Molecular insights into the recruitment of TFIIH to sites of DNA damage. EMBO J 28: 2971-2980.
-
(2009)
EMBO J
, vol.28
, pp. 2971-2980
-
-
Oksenych, V.1
de Jesus, B.B.2
Zhovmer, A.3
Egly, J.M.4
Coin, F.5
-
103
-
-
79953838905
-
Structures of human exonu-clease 1 DNA complexes suggest a unified mechanism for nuclease family
-
Orans J, McSweeney EA, Iyer RR, Hast MA, Hellinga HW, Modrich P, Beese LS. 2011. Structures of human exonu-clease 1 DNA complexes suggest a unified mechanism for nuclease family. Cell 145: 212-223.
-
(2011)
Cell
, vol.145
, pp. 212-223
-
-
Orans, J.1
McSweeney, E.A.2
Iyer, R.R.3
Hast, M.A.4
Hellinga, H.W.5
Modrich, P.6
Beese, L.S.7
-
104
-
-
77950487121
-
The XPA-binding domain of ERCC1 is required for nucleotide excision repair but not other DNA repair pathways
-
Orelli B, McClendon TB, Tsodikov OV, Ellenberger T, Nie-dernhofer LJ, Schärer OD. 2010. The XPA-binding domain of ERCC1 is required for nucleotide excision repair but not other DNA repair pathways. J Biol Chem 285: 3705-3712.
-
(2010)
J Biol Chem
, vol.285
, pp. 3705-3712
-
-
Orelli, B.1
McClendon, T.B.2
Tsodikov, O.V.3
Ellenberger, T.4
Nie-Dernhofer, L.J.5
Schärer, O.D.6
-
105
-
-
79551691855
-
Replication protein A safeguards genome integrity by controlling NER incision events
-
Overmeer RM, Moser J, Volker M, Kool H, Tomkinson AE, van Zeeland AA, Mullenders LH, Fousteri M. 2011. Replication protein A safeguards genome integrity by controlling NER incision events. J Cell Biol 192: 401-415.
-
(2011)
J Cell Biol
, vol.192
, pp. 401-415
-
-
Overmeer, R.M.1
Moser, J.2
Volker, M.3
Kool, H.4
Tomkinson, A.E.5
van Zeeland, A.A.6
Mullenders, L.H.7
Fousteri, M.8
-
106
-
-
0028932889
-
The general transcription-repair factor TFIIH is recruited to the excision repair complex by the XPA protein independent of the TFIIE transcription factor
-
Park CH, Mu D, Reardon JT, Sancar A. 1995. The general transcription-repair factor TFIIH is recruited to the excision repair complex by the XPA protein independent of the TFIIE transcription factor. J Biol Chem 270: 4896-4902.
-
(1995)
J Biol Chem
, vol.270
, pp. 4896-4902
-
-
Park, C.H.1
Mu, D.2
Reardon, J.T.3
Sancar, A.4
-
107
-
-
0037013193
-
Xeroderma pigmentosum complementation group A protein (XPA) modulates RPA-DNA interactions via enhanced complex stability and inhibition of strand separation activity
-
Patrick SM, Turchi JJ. 2002. Xeroderma pigmentosum complementation group A protein (XPA) modulates RPA-DNA interactions via enhanced complex stability and inhibition of strand separation activity. J Biol Chem 277: 16096-16101.
-
(2002)
J Biol Chem
, vol.277
, pp. 16096-16101
-
-
Patrick, S.M.1
Turchi, J.J.2
-
108
-
-
84883797029
-
Nucleosome dynamics as modular systems that integrate DNA damage and repair
-
doi: 10.1101/cshper-spect.a012658
-
Peterson CL, Almouzni G. 2013. Nucleosome dynamics as modular systems that integrate DNA damage and repair. Cold Spring Harb Perspect Biol doi: 10.1101/cshper-spect.a012658.
-
(2013)
Cold Spring Harb Perspect Biol
-
-
Peterson, C.L.1
Almouzni, G.2
-
109
-
-
0000830740
-
Evidence for repair-replication of ultraviolet damaged DNA in bacteria
-
Pettijohn D, Hanawalt P. 1964. Evidence for repair-replication of ultraviolet damaged DNA in bacteria. J Mol Biol 9: 395-410.
-
(1964)
J Mol Biol
, vol.9
, pp. 395-410
-
-
Pettijohn, D.1
Hanawalt, P.2
-
110
-
-
84869111403
-
PARP1 promotes nucleotide excision repair through DDB2 stabilization and recruitment of ALC1
-
Pines A, Vrouwe MG, Marteijn JA, Typas D, Luijsterburg MS, Cansoy M, Hensbergen P, Deelder A, de Groot A, Matsumoto S, et al. 2012. PARP1 promotes nucleotide excision repair through DDB2 stabilization and recruitment of ALC1. J Cell Biol 199: 235-249.
-
(2012)
J Cell Biol
, vol.199
, pp. 235-249
-
-
Pines, A.1
Vrouwe, M.G.2
Marteijn, J.A.3
Typas, D.4
Luijsterburg, M.S.5
Cansoy, M.6
Hensbergen, P.7
Deelder, A.8
de Groot, A.9
Matsumoto, S.10
-
111
-
-
33750449326
-
New histone incorporation marks sites of UV repair in human cells
-
Polo SE, Roche D, Almouzni G. 2006. New histone incorporation marks sites of UV repair in human cells. Cell 127: 481-493.
-
(2006)
Cell
, vol.127
, pp. 481-493
-
-
Polo, S.E.1
Roche, D.2
Almouzni, G.3
-
112
-
-
0034733496
-
Nucleotide excision repair in yeast
-
Prakash S, Prakash L. 2000. Nucleotide excision repair in yeast. Mutat Res 451: 13-24.
-
(2000)
Mutat Res
, vol.451
, pp. 13-24
-
-
Prakash, S.1
Prakash, L.2
-
113
-
-
84857194573
-
Regulation of transloca-tion polarity by helicase domain 1 in SF2B helicases
-
Pugh RA, Wu CG, Spies M. 2012. Regulation of transloca-tion polarity by helicase domain 1 in SF2B helicases. EMBO J 31: 503-514.
-
(2012)
EMBO J
, vol.31
, pp. 503-514
-
-
Pugh, R.A.1
Wu, C.G.2
Spies, M.3
-
114
-
-
0042632884
-
Xeroderma pigmentosum group A protein loads as a separate factor onto DNA lesions
-
Rademakers S, Volker M, Hoogstraten D, Nigg AL, Mone MJ, Van Zeeland AA, Hoeijmakers JH, Houtsmuller AB, Vermeulen W. 2003. Xeroderma pigmentosum group A protein loads as a separate factor onto DNA lesions. Mol Cell Biol 23: 5755-5767.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 5755-5767
-
-
Rademakers, S.1
Volker, M.2
Hoogstraten, D.3
Nigg, A.L.4
Mone, M.J.5
van Zeeland, A.A.6
Hoeijmakers, J.H.7
Houtsmuller, A.B.8
Vermeulen, W.9
-
115
-
-
3042703022
-
Identification ofTFB5,anew componentof general transcription and DNA repair factor IIH
-
Ranish JA, Hahn S, Lu Y, Yi EC, Li XJ, Eng J, Aebersold R. 2004. Identification ofTFB5,anew componentof general transcription and DNA repair factor IIH. Nat Genet 36: 707-713.
-
(2004)
Nat Genet
, vol.36
, pp. 707-713
-
-
Ranish, J.A.1
Hahn, S.2
Lu, Y.3
Yi, E.C.4
Li, X.J.5
Eng, J.6
Aebersold, R.7
-
116
-
-
0001186415
-
Evidence for repair of ultra-violet damaged deoxyribonucleic acid in cultured mammalian cells
-
Rasmussen RE, Painter RB. 1964. Evidence for repair of ultra-violet damaged deoxyribonucleic acid in cultured mammalian cells. Nature 203: 1360-1362.
-
(1964)
Nature
, vol.203
, pp. 1360-1362
-
-
Rasmussen, R.E.1
Painter, R.B.2
-
117
-
-
71949103959
-
Human SNF5/INI1, acomponent of the human SWI/SNF chromatin remodeling complex, promotes nucleotide excision repair by influencing ATM recruitment and downstream H2AX phosphorylation
-
Ray A, Mir SN, Wani G, Zhao Q, Battu A, Zhu Q, Wang QE, Wani AA. 2009. Human SNF5/INI1, acomponent of the human SWI/SNF chromatin remodeling complex, promotes nucleotide excision repair by influencing ATM recruitment and downstream H2AX phosphorylation. Mol Cell Biol 29: 6206-6219.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 6206-6219
-
-
Ray, A.1
Mir, S.N.2
Wani, G.3
Zhao, Q.4
Battu, A.5
Zhu, Q.6
Wang, Q.E.7
Wani, A.A.8
-
118
-
-
0142059994
-
Recognition and repair of the cyclobutane thymine dimer, a major cause of skin cancers, by the human excision nuclease
-
Reardon JT, Sancar A. 2003. Recognition and repair of the cyclobutane thymine dimer, a major cause of skin cancers, by the human excision nuclease. Genes Dev 17: 2539-2551.
-
(2003)
Genes Dev
, vol.17
, pp. 2539-2551
-
-
Reardon, J.T.1
Sancar, A.2
-
119
-
-
0141753120
-
The comings and goings of nucleotide excision repair factors on damaged DNA
-
Riedl T, Hanaoka F, Egly JM. 2003. The comings and goings of nucleotide excision repair factors on damaged DNA. Embo J 22: 5293-5303.
-
(2003)
Embo J
, vol.22
, pp. 5293-5303
-
-
Riedl, T.1
Hanaoka, F.2
Egly, J.M.3
-
120
-
-
84873130772
-
Role of poly(ADP-ribose) polymerase-1in the removal of UV-induced DNA lesions by nucleotide excision repair
-
Robu M, Shah RG, Petitclerc N, Brind'Amour J, Kandan-Kulangara F, Shah GM. 2013. Role of poly(ADP-ribose) polymerase-1in the removal of UV-induced DNA lesions by nucleotide excision repair. Proc Natl Acad Sci 110: 1658-1663.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. 1658-1663
-
-
Robu, M.1
Shah, R.G.2
Petitclerc, N.3
Brind'Amour, J.4
Kandan-Kulangara, F.5
Shah, G.M.6
-
121
-
-
79953153739
-
Nucleotide excision repair by mutant xeroderma pigmentosum group A (XPA) proteins with deficiency in interaction with RPA
-
Saijo M, Takedachi A, Tanaka K. 2011. Nucleotide excision repair by mutant xeroderma pigmentosum group A (XPA) proteins with deficiency in interaction with RPA. J Biol Chem 286: 5476-5483.
-
(2011)
J Biol Chem
, vol.286
, pp. 5476-5483
-
-
Saijo, M.1
Takedachi, A.2
Tanaka, K.3
-
122
-
-
78650089978
-
The Ino80 chromatin-remodeling complex restores chromatin structure during UV DNA damage repair
-
Sarkar S, Kiely R, McHugh PJ. 2010. The Ino80 chromatin-remodeling complex restores chromatin structure during UV DNA damage repair. J Cell Biol 191: 1061-1068.
-
(2010)
J Cell Biol
, vol.191
, pp. 1061-1068
-
-
Sarkar, S.1
Kiely, R.2
McHugh, P.J.3
-
124
-
-
57749198023
-
Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex
-
Scrima A, Konickova R, Czyzewski BK, Kawasaki Y, Jeffrey PD, Groisman R, Nakatani Y, Iwai S, Pavletich NP, Thoma NH. 2008. Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex. Cell 135: 1213-1223.
-
(2008)
Cell
, vol.135
, pp. 1213-1223
-
-
Scrima, A.1
Konickova, R.2
Czyzewski, B.K.3
Kawasaki, Y.4
Jeffrey, P.D.5
Groisman, R.6
Nakatani, Y.7
Iwai, S.8
Pavletich, N.P.9
Thoma, N.H.10
-
125
-
-
80051961183
-
Human exonuclease 1 connects nucleotide excision repair (NER) processing with checkpoint activation in response to UV irradiation
-
Sertic S, Pizzi S, Cloney R, Lehmann AR, Marini F, Plevani P, Muzi-Falconi M. 2011. Human exonuclease 1 connects nucleotide excision repair (NER) processing with checkpoint activation in response to UV irradiation. Proc Natl Acad Sci 108: 13647-13652.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 13647-13652
-
-
Sertic, S.1
Pizzi, S.2
Cloney, R.3
Lehmann, A.R.4
Marini, F.5
Plevani, P.6
Muzi-Falconi, M.7
-
126
-
-
78651191735
-
The disappearanceof thymine dimers from DNA: An error-correcting mechanism
-
Setlow RB, Carrier WL. 1964. The disappearanceof thymine dimers from DNA: An error-correcting mechanism. Proc Natl Acad Sci 51: 226-231.
-
(1964)
Proc Natl Acad Sci
, vol.51
, pp. 226-231
-
-
Setlow, R.B.1
Carrier, W.L.2
-
127
-
-
0028965151
-
Nu-cleotide excision repair DNA synthesis by DNA polymer-ase epsilon in the presence of PCNA, RFC, and RPA
-
Shivji MK, Podust VN, Hubscher U, Wood RD. 1995. Nu-cleotide excision repair DNA synthesis by DNA polymer-ase epsilon in the presence of PCNA, RFC, and RPA. Biochemistry 34: 5011-5017.
-
(1995)
Biochemistry
, vol.34
, pp. 5011-5017
-
-
Shivji, M.K.1
Podust, V.N.2
Hubscher, U.3
Wood, R.D.4
-
128
-
-
0018125018
-
Nucleosome rearrangement in human chromatin during UV-induced DNA-reapir [sic] synthesis
-
Smerdon MJ, Lieberman MW. 1978. Nucleosome rearrangement in human chromatin during UV-induced DNA-reapir [sic] synthesis. Proc Natl Acad Sci 75: 4238-4241.
-
(1978)
Proc Natl Acad Sci
, vol.75
, pp. 4238-4241
-
-
Smerdon, M.J.1
Lieberman, M.W.2
-
129
-
-
67349212889
-
Coordination of dual incision and repair synthesis in human nucleotide excision repair
-
Staresincic L, Fagbemi AF, Enzlin JH, Gourdin AM, Wijgers N, Dunand-Sauthier I, Giglia-Mari G, Clarkson SG, Ver-meulen W, Schärer OD. 2009. Coordination of dual incision and repair synthesis in human nucleotide excision repair. EMBO J 28: 1111-1120.
-
(2009)
EMBO J
, vol.28
, pp. 1111-1120
-
-
Staresincic, L.1
Fagbemi, A.F.2
Enzlin, J.H.3
Gourdin, A.M.4
Wijgers, N.5
Dunand-Sauthier, I.6
Giglia-Mari, G.7
Clarkson, S.G.8
Ver-Meulen, W.9
Schärer, O.D.10
-
130
-
-
0029742577
-
HHR23B, a human Rad23 homolog, stimulates XPC protein in nucleotide excision repair in vitro
-
Sugasawa K, Masutani C, Uchida A, Maekawa T, van der Spek PJ, Bootsma D, Hoeijmakers JH, Hanaoka F. 1996. HHR23B, a human Rad23 homolog, stimulates XPC protein in nucleotide excision repair in vitro. Mol Cell Biol 16: 4852-4861.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 4852-4861
-
-
Sugasawa, K.1
Masutani, C.2
Uchida, A.3
Maekawa, T.4
van der Spek, P.J.5
Bootsma, D.6
Hoeijmakers, J.H.7
Hanaoka, F.8
-
131
-
-
0032134423
-
Xeroderma pigmentosum groupC protein complexisthe initiatorof global genome nucleotide excision repair
-
Sugasawa K, Ng JM, Masutani C, Iwai S, van der Spek PJ, Eker AP, Hanaoka F, Bootsma D, Hoeijmakers JH. 1998. Xeroderma pigmentosum groupC protein complexisthe initiatorof global genome nucleotide excision repair. Mol Cell 2: 223-232.
-
(1998)
Mol Cell
, vol.2
, pp. 223-232
-
-
Sugasawa, K.1
Ng, J.M.2
Masutani, C.3
Iwai, S.4
van der Spek, P.J.5
Eker, A.P.6
Hanaoka, F.7
Bootsma, D.8
Hoeijmakers, J.H.9
-
132
-
-
0035282109
-
A multistep damage recognition mechanism for global genomic nucleotide excision repair
-
Sugasawa K, Okamoto T, Shimizu Y, Masutani C, Iwai S, Hanaoka F. 2001. A multistep damage recognition mechanism for global genomic nucleotide excision repair. Genes Dev 15: 507-521.
-
(2001)
Genes Dev
, vol.15
, pp. 507-521
-
-
Sugasawa, K.1
Okamoto, T.2
Shimizu, Y.3
Masutani, C.4
Iwai, S.5
Hanaoka, F.6
-
133
-
-
0036012799
-
A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex
-
Sugasawa K, Shimizu Y, Iwai S, Hanaoka F. 2002. A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex. DNA Repair (Amst) 1: 95-107.
-
(2002)
DNA Repair (Amst)
, vol.1
, pp. 95-107
-
-
Sugasawa, K.1
Shimizu, Y.2
Iwai, S.3
Hanaoka, F.4
-
134
-
-
21044442126
-
UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex
-
Sugasawa K, Okuda Y, Saijo M, Nishi R, Matsuda N, Chu G, Mori T, Iwai S, Tanaka K, Tanaka K, et al. 2005. UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex. Cell 121: 387-400.
-
(2005)
Cell
, vol.121
, pp. 387-400
-
-
Sugasawa, K.1
Okuda, Y.2
Saijo, M.3
Nishi, R.4
Matsuda, N.5
Chu, G.6
Mori, T.7
Iwai, S.8
Tanaka, K.9
Tanaka, K.10
-
135
-
-
70449717367
-
Two-step recognition of DNA damage for mammalian nucle-otide excision repair: Directional binding of the XPC complex and DNA strand scanning
-
Sugasawa K, Akagi J, Nishi R, Iwai S, Hanaoka F. 2009. Two-step recognition of DNA damage for mammalian nucle-otide excision repair: Directional binding of the XPC complex and DNA strand scanning. Mol Cell 36: 642-653.
-
(2009)
Mol Cell
, vol.36
, pp. 642-653
-
-
Sugasawa, K.1
Akagi, J.2
Nishi, R.3
Iwai, S.4
Hanaoka, F.5
-
137
-
-
0033636515
-
Xeroderma pigmentosum p48 gene enhances global ge-nomic repair and suppresses UV-induced mutagenesis
-
Tang JY, Hwang BJ, Ford JM, Hanawalt PC, Chu G. 2000. Xeroderma pigmentosum p48 gene enhances global ge-nomic repair and suppresses UV-induced mutagenesis. Mol Cell 5: 737-744.
-
(2000)
Mol Cell
, vol.5
, pp. 737-744
-
-
Tang, J.Y.1
Hwang, B.J.2
Ford, J.M.3
Hanawalt, P.C.4
Chu, G.5
-
138
-
-
2442586630
-
Ordered conformational changes in damaged DNA induced by nucleotide excision repair factors
-
Tapias A, Auriol J, Forget D, Enzlin JH, Schärer OD, Coin F, Coulombe B, Egly JM. 2004. Ordered conformational changes in damaged DNA induced by nucleotide excision repair factors. J Biol Chem 279: 19074-19083.
-
(2004)
J Biol Chem
, vol.279
, pp. 19074-19083
-
-
Tapias, A.1
Auriol, J.2
Forget, D.3
Enzlin, J.H.4
Schärer, O.D.5
Coin, F.6
Coulombe, B.7
Egly, J.M.8
-
139
-
-
80052320934
-
Slowly progressing nucleotide excision repair in trichothiodystrophy group A patient fibroblasts
-
Theil AF, Nonnekens J, Wijgers N, Vermeulen W, Giglia-Mari G. 2011. Slowly progressing nucleotide excision repair in trichothiodystrophy group A patient fibroblasts. Mol Cell Biol 31: 3630-3638.
-
(2011)
Mol Cell Biol
, vol.31
, pp. 3630-3638
-
-
Theil, A.F.1
Nonnekens, J.2
Wijgers, N.3
Vermeulen, W.4
Giglia-Mari, G.5
-
140
-
-
84876823728
-
Disruption ofTTDA results in complete nucleotide excision repair deficiency and embryonic lethality
-
Theil AF, Nonnekens J, Streuer B, Mari PO, de Wit J, Lemai-tre C, Marteijn JA, Raams A, Maas A, Vermej M, et al. 2013. Disruption ofTTDA results in complete nucleotide excision repair deficiency and embryonic lethality. PLoS Genet 9: e1003431.
-
(2013)
PLoS Genet
, vol.9
-
-
Theil, A.F.1
Nonnekens, J.2
Streuer, B.3
Mari, P.O.4
de Wit, J.5
Lemai-Tre, C.6
Marteijn, J.A.7
Raams, A.8
Maas, A.9
Vermej, M.10
-
141
-
-
0032128265
-
Chinese hamster cells meet DNA repair: An entirely acceptable affair
-
Thompson LH. 1998. Chinese hamster cells meet DNA repair: An entirely acceptable affair. Bioessays 20: 589-597.
-
(1998)
Bioessays
, vol.20
, pp. 589-597
-
-
Thompson, L.H.1
-
142
-
-
34848864364
-
Analysis of the XPA and ssDNA-binding surfaceson the central domain ofhuman ERCC1 reveals evidence for subfunctionalization
-
Tripsianes K, Folkers GE, Zheng C, Das D, Grinstead JS, Kaptein R, Boelens R. 2007. Analysis of the XPA and ssDNA-binding surfaceson the central domain ofhuman ERCC1 reveals evidence for subfunctionalization. Nucleic Acids Res 35: 5789-5798.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5789-5798
-
-
Tripsianes, K.1
Folkers, G.E.2
Zheng, C.3
Das, D.4
Grinstead, J.S.5
Kaptein, R.6
Boelens, R.7
-
143
-
-
36249002305
-
Structural basis for the recruitment of ERCC1-XPF to nucleotide excision repair complexes by XPA
-
Tsodikov OV, Ivanov D, Orelli B, Staresincic L, Shoshani I, Oberman R, Schärer OD, Wagner G, Ellenberger T. 2007. Structural basis for the recruitment of ERCC1-XPF to nucleotide excision repair complexes by XPA. EMBO J 26: 4768-4776.
-
(2007)
EMBO J
, vol.26
, pp. 4768-4776
-
-
Tsodikov, O.V.1
Ivanov, D.2
Orelli, B.3
Staresincic, L.4
Shoshani, I.5
Oberman, R.6
Schärer, O.D.7
Wagner, G.8
Ellenberger, T.9
-
144
-
-
79953894934
-
Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily
-
Tsutakawa SE, Classen S, Chapados BR, Arvai AS, Finger LD, Guenther G, Tomlinson CG, Thompson P, Sarker AH, Shen B, et al. 2011. Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily. Cell 145: 198-211.
-
(2011)
Cell
, vol.145
, pp. 198-211
-
-
Tsutakawa, S.E.1
Classen, S.2
Chapados, B.R.3
Arvai, A.S.4
Finger, L.D.5
Guenther, G.6
Tomlinson, C.G.7
Thompson, P.8
Sarker, A.H.9
Shen, B.10
-
145
-
-
67249113070
-
Flipping of alkylated DNA damage bridges base and nucleotide excision repair
-
Tubbs JL, Latypov V, Kanugula S, Butt A, Melikishvili M, Kraehenbuehl R, Fleck O, Marriott A, Watson AJ, Verbeek B, et al. 2009. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 459: 808-813.
-
(2009)
Nature
, vol.459
, pp. 808-813
-
-
Tubbs, J.L.1
Latypov, V.2
Kanugula, S.3
Butt, A.4
Melikishvili, M.5
Kraehenbuehl, R.6
Fleck, O.7
Marriott, A.8
Watson, A.J.9
Verbeek, B.10
-
146
-
-
0035901558
-
ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleo-somes
-
Ura K, Araki M, Saeki H, Masutani C, Ito T, Iwai S, Mizu-koshi T, Kaneda Y, Hanaoka F. 2001. ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleo-somes. EMBO J 20: 2004-2014.
-
(2001)
EMBO J
, vol.20
, pp. 2004-2014
-
-
Ura, K.1
Araki, M.2
Saeki, H.3
Masutani, C.4
Ito, T.5
Iwai, S.6
Mizu-Koshi, T.7
Kaneda, Y.8
Hanaoka, F.9
-
148
-
-
0033768176
-
Sublimit-ing concentration of TFIIH transcription/DNA repair factor causes TTD-A trichothiodystrophy disorder
-
Vermeulen W, Bergmann E, Auriol J, Rademakers S, Frit P, Appeldoorn E, Hoeijmakers JH, Egly JM. 2000. Sublimit-ing concentration of TFIIH transcription/DNA repair factor causes TTD-A trichothiodystrophy disorder. Nat Genet 26: 307-313.
-
(2000)
Nat Genet
, vol.26
, pp. 307-313
-
-
Vermeulen, W.1
Bergmann, E.2
Auriol, J.3
Rademakers, S.4
Frit, P.5
Appeldoorn, E.6
Hoeijmakers, J.H.7
Egly, J.M.8
-
149
-
-
17944361949
-
Sequential assembly of the nucleotide excision repair factors in vivo
-
Volker M, Mone MJ, Karmakar P, van Hoffen A, Schul W, Vermeulen W, Hoeijmakers JH, van Driel R, van Zeeland AA, Mullenders LH. 2001. Sequential assembly of the nucleotide excision repair factors in vivo. Mol Cell 8: 213-224.
-
(2001)
Mol Cell
, vol.8
, pp. 213-224
-
-
Volker, M.1
Mone, M.J.2
Karmakar, P.3
van Hoffen, A.4
Schul, W.5
Vermeulen, W.6
Hoeijmakers, J.H.7
van Driel, R.8
van Zeeland, A.A.9
Mullenders, L.H.10
-
150
-
-
0032499719
-
Assembly, subunit composition, and footprint of human DNA repair excision nu-clease
-
Wakasugi M, Sancar A. 1998. Assembly, subunit composition, and footprint of human DNA repair excision nu-clease. Proc Natl Acad Sci 95: 6669-6674.
-
(1998)
Proc Natl Acad Sci
, vol.95
, pp. 6669-6674
-
-
Wakasugi, M.1
Sancar, A.2
-
151
-
-
0030941340
-
The non-catalytic function of XPG protein during dual incision in human nucleotide excision repair
-
Wakasugi M, Reardon JT, Sancar A. 1997. The non-catalytic function of XPG protein during dual incision in human nucleotide excision repair. J Biol Chem 272: 16030-16034.
-
(1997)
J Biol Chem
, vol.272
, pp. 16030-16034
-
-
Wakasugi, M.1
Reardon, J.T.2
Sancar, A.3
-
152
-
-
0035805554
-
Damaged DNA-binding protein DDB stimulates the excision of cyclobutane pyrimidine dimers in vitro in concert with XPA and replication protein A
-
Wakasugi M, Shimizu M, Morioka H, Linn S, Nikaido O, Matsunaga T. 2001. Damaged DNA-binding protein DDB stimulates the excision of cyclobutane pyrimidine dimers in vitro in concert with XPA and replication protein A. J Biol Chem 276: 15434-15440.
-
(2001)
J Biol Chem
, vol.276
, pp. 15434-15440
-
-
Wakasugi, M.1
Shimizu, M.2
Morioka, H.3
Linn, S.4
Nikaido, O.5
Matsunaga, T.6
-
153
-
-
0037127293
-
DDB accumulates at DNA damage sites immediately after UV irradiation and directly stimulates nucleotide excision repair
-
Wakasugi M, Kawashima A, Morioka H, Linn S, Sancar A, Mori T, Nikaido O, Matsunaga T.2002. DDB accumulates at DNA damage sites immediately after UV irradiation and directly stimulates nucleotide excision repair. J Biol Chem 277: 1637-1640.
-
(2002)
J Biol Chem
, vol.277
, pp. 1637-1640
-
-
Wakasugi, M.1
Kawashima, A.2
Morioka, H.3
Linn, S.4
Sancar, A.5
Mori, T.6
Nikaido, O.7
Matsunaga, T.8
-
154
-
-
59649126995
-
Physical and functional interaction between DDB and XPA in nucle-otide excision repair
-
Wakasugi M, Kasashima H, Fukase Y, Imura M, Imai R, Yamada S, Cleaver JE, Matsunaga T. 2009. Physical and functional interaction between DDB and XPA in nucle-otide excision repair. Nucleic Acids Res 37: 516-525.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 516-525
-
-
Wakasugi, M.1
Kasashima, H.2
Fukase, Y.3
Imura, M.4
Imai, R.5
Yamada, S.6
Cleaver, J.E.7
Matsunaga, T.8
-
155
-
-
33744781568
-
Histone H3 and H4 ubiquitylation by the CUL4-DDB-ROC1 ubiquitin ligase facilitates cellular response to DNA damage
-
Wang H, Zhai L, Xu J, Joo HY, Jackson S, Erdjument-Brom-age H, Tempst P, Xiong Y, Zhang Y. 2006. Histone H3 and H4 ubiquitylation by the CUL4-DDB-ROC1 ubiquitin ligase facilitates cellular response to DNA damage. Mol Cell 22: 383-394.
-
(2006)
Mol Cell
, vol.22
, pp. 383-394
-
-
Wang, H.1
Zhai, L.2
Xu, J.3
Joo, H.Y.4
Jackson, S.5
Erdjument-Brom-age, H.6
Tempst, P.7
Xiong, Y.8
Zhang, Y.9
-
156
-
-
0040435451
-
TFIIH with inactive XPD helicase functions in transcription initiation but is defective in DNA repair
-
Winkler GS, Araujo SJ, Fiedler U, Vermeulen W, Coin F, Egly JM, Hoeijmakers JH, Wood RD, Timmers HT, Weeda G. 2000. TFIIH with inactive XPD helicase functions in transcription initiation but is defective in DNA repair. J Biol Chem 275: 4258-4266.
-
(2000)
J Biol Chem
, vol.275
, pp. 4258-4266
-
-
Winkler, G.S.1
Araujo, S.J.2
Fiedler, U.3
Vermeulen, W.4
Coin, F.5
Egly, J.M.6
Hoeijmakers, J.H.7
Wood, R.D.8
Timmers, H.T.9
Weeda, G.10
-
157
-
-
28944440380
-
DDB1-DDB2 (xeroderma pigmentosum group E) protein complex recognizes a cyclobutane py-rimidine dimer, mismatches, apurinic/apyrimidinic sites, and compound lesions in DNA
-
Winkler GS, Araujo SJ, Fiedler U, Vermeulen W, Coin F, Egly JM, Hoeijmakers JH, Wittschieben BO, Iwai S, Wood RD. 2005. DDB1-DDB2 (xeroderma pigmentosum group E) protein complex recognizes a cyclobutane py-rimidine dimer, mismatches, apurinic/apyrimidinic sites, and compound lesions in DNA. J Biol Chem 280: 39982-39989.
-
(2005)
J Biol Chem
, vol.280
, pp. 39982-39989
-
-
Winkler, G.S.1
Araujo, S.J.2
Fiedler, U.3
Vermeulen, W.4
Coin, F.5
Egly, J.M.6
Hoeijmakers, J.H.7
Wittschieben, B.O.8
Iwai, S.9
Wood, R.D.10
-
158
-
-
45849119445
-
Crystal structureofthe FeS cluster-containing nucleotide excision repair helicase XPD
-
Wolski SC, Kuper J, Hanzelmann P, Truglio JJ, Croteau DL, Van Houten B, Kisker C. 2008. Crystal structureofthe FeS cluster-containing nucleotide excision repair helicase XPD. PLoS Biol 6: e149.
-
(2008)
PLoS Biol
, vol.6
-
-
Wolski, S.C.1
Kuper, J.2
Hanzelmann, P.3
Truglio, J.J.4
Croteau, D.L.5
van Houten, B.6
Kisker, C.7
-
159
-
-
0023878893
-
Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts
-
Wood RD, Robins P, Lindahl T. 1988. Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts. Cell 53: 97-106.
-
(1988)
Cell
, vol.53
, pp. 97-106
-
-
Wood, R.D.1
Robins, P.2
Lindahl, T.3
-
160
-
-
84867376482
-
Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chroma-tinized DNA repair
-
Yeh JI, Levine AS, Du S, Chinte U, Ghodke H, Wang H, Shi H, Hsieh CL, Conway JF, Van Houten B, et al. 2012. Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chroma-tinized DNA repair. Proc Natl Acad Sci 109: E2737-E2746.
-
(2012)
Proc Natl Acad Sci
, vol.109
-
-
Yeh, J.I.1
Levine, A.S.2
Du, S.3
Chinte, U.4
Ghodke, H.5
Wang, H.6
Shi, H.7
Hsieh, C.L.8
Conway, J.F.9
van Houten, B.10
-
161
-
-
84869407113
-
The efficiencies of damage recognition and excision correlate with duplex destabilization induced by acetylamino-fluorene adducts in human nucleotide excision repair
-
Yeo JE, Khoo A, Fagbemi AF, Scharer OD. 2012. The efficiencies of damage recognition and excision correlate with duplex destabilization induced by acetylamino-fluorene adducts in human nucleotide excision repair. Chem Res Toxicol 25: 2462-2468.
-
(2012)
Chem Res Toxicol
, vol.25
, pp. 2462-2468
-
-
Yeo, J.E.1
Khoo, A.2
Fagbemi, A.F.3
Scharer, O.D.4
-
162
-
-
0034737426
-
The xeroderma pigmentosum group C protein complex XPC-HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA
-
Yokoi M, Masutani C, Maekawa T, Sugasawa K, Ohkuma Y, Hanaoka F. 2000. The xeroderma pigmentosum group C protein complex XPC-HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA. J Biol Chem 275: 9870-9875.
-
(2000)
J Biol Chem
, vol.275
, pp. 9870-9875
-
-
Yokoi, M.1
Masutani, C.2
Maekawa, T.3
Sugasawa, K.4
Ohkuma, Y.5
Hanaoka, F.6
-
163
-
-
0037470239
-
Biochemical analysis of the damage recognition process in nucleotide excision repair
-
You JS, Wang M, Lee SH. 2003. Biochemical analysis of the damage recognition process in nucleotide excision repair. J Biol Chem 278: 7476-7485.
-
(2003)
J Biol Chem
, vol.278
, pp. 7476-7485
-
-
You, J.S.1
Wang, M.2
Lee, S.H.3
-
164
-
-
71049159100
-
Modulation of nucleotide excision repair by mammalian SWI/SNF chromatin-remodeling complex
-
Zhao Q, Wang QE, Ray A, Wani G, Han C, Milum K, Wani AA. 2009. Modulation of nucleotide excision repair by mammalian SWI/SNF chromatin-remodeling complex. J Biol Chem 284: 30424-30432.
-
(2009)
J Biol Chem
, vol.284
, pp. 30424-30432
-
-
Zhao, Q.1
Wang, Q.E.2
Ray, A.3
Wani, G.4
Han, C.5
Milum, K.6
Wani, A.A.7
-
165
-
-
33845232596
-
Recruitment of the nucleotide excision repair endonuclease XPG to sites of UV-induced dna damage depends on functional TFIIH
-
Zotter A, Luijsterburg MS, Warmerdam DO, Ibrahim S, Nigg A, van Cappellen WA, Hoeijmakers JH, van Driel R, Vermeulen W, Houtsmuller AB. 2006. Recruitment of the nucleotide excision repair endonuclease XPG to sites of UV-induced dna damage depends on functional TFIIH. Mol Cell Biol 26: 8868-8879.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 8868-8879
-
-
Zotter, A.1
Luijsterburg, M.S.2
Warmerdam, D.O.3
Ibrahim, S.4
Nigg, A.5
van Cappellen, W.A.6
Hoeijmakers, J.H.7
van Driel, R.8
Vermeulen, W.9
Houtsmuller, A.B.10
-
166
-
-
0037567268
-
Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes
-
Zou L, Elledge SJ. 2003. Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. Science 300: 1542-1548.
-
(2003)
Science
, vol.300
, pp. 1542-1548
-
-
Zou, L.1
Elledge, S.J.2
|