메뉴 건너뛰기




Volumn 26, Issue 20, 2012, Pages 2337-2347

Structure and conformational change of a replication protein A heterotrimer bound to ssDNA

Author keywords

DNA repair; DNA replication; RPA; ssDNA binding

Indexed keywords

REPLICATION FACTOR A; SINGLE STRANDED DNA;

EID: 84867693856     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.194787.112     Document Type: Article
Times cited : (171)

References (42)
  • 1
    • 0142135087 scopus 로고    scopus 로고
    • Independent and coordinated functions of replication protein A tandem high affinity single-stranded DNA binding domains
    • Arunkumar AI, Stauffer ME, Bochkareva E, Bochkarev A, Chazin WJ. 2003. Independent and coordinated functions of replication protein A tandem high affinity single-stranded DNA binding domains. J Biol Chem 278: 41077-41082.
    • (2003) J Biol Chem , vol.278 , pp. 41077-41082
    • Arunkumar, A.I.1    Stauffer, M.E.2    Bochkareva, E.3    Bochkarev, A.4    Chazin, W.J.5
  • 3
    • 0035954737 scopus 로고    scopus 로고
    • RPA governs endonuclease switching during processing of Okazaki fragments in eukaryotes
    • Bae SH, Bae KH, Kim JA, Seo YS. 2001. RPA governs endonuclease switching during processing of Okazaki fragments in eukaryotes. Nature 412: 456-461.
    • (2001) Nature , vol.412 , pp. 456-461
    • Bae, S.H.1    Bae, K.H.2    Kim, J.A.3    Seo, Y.S.4
  • 4
    • 0035965188 scopus 로고    scopus 로고
    • Functional analysis of the four DNA binding domains of replication protein A. The role of RPA2 in ssDNA binding
    • Bastin-Shanower SA, Brill SJ. 2001. Functional analysis of the four DNA binding domains of replication protein A. The role of RPA2 in ssDNA binding. J Biol Chem 276: 36446-36453.
    • (2001) J Biol Chem , vol.276 , pp. 36446-36453
    • Bastin-Shanower, S.A.1    Brill, S.J.2
  • 5
    • 0028333942 scopus 로고
    • Human replication protein A binds single-stranded DNA in two distinct complexes
    • Blackwell LJ, Borowiec JA. 1994. Human replication protein A binds single-stranded DNA in two distinct complexes. Mol Cell Biol 14: 3993-4001.
    • (1994) Mol Cell Biol , vol.14 , pp. 3993-4001
    • Blackwell, L.J.1    Borowiec, J.A.2
  • 6
    • 0031030449 scopus 로고    scopus 로고
    • Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA
    • Bochkarev A, Pfuetzner RA, Edwards AM, Frappier L. 1997. Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA. Nature 385: 176-181.
    • (1997) Nature , vol.385 , pp. 176-181
    • Bochkarev, A.1    Pfuetzner, R.A.2    Edwards, A.M.3    Frappier, L.4
  • 7
    • 0032512745 scopus 로고    scopus 로고
    • The RPA32 subunit of human replication protein A contains a single-stranded DNA-binding domain
    • Bochkareva E, Frappier L, Edwards AM, Bochkarev A. 1998. The RPA32 subunit of human replication protein A contains a single-stranded DNA-binding domain. J Biol Chem 273: 3932-3936.
    • (1998) J Biol Chem , vol.273 , pp. 3932-3936
    • Bochkareva, E.1    Frappier, L.2    Edwards, A.M.3    Bochkarev, A.4
  • 8
    • 0034282879 scopus 로고    scopus 로고
    • The role for zinc in replication protein A
    • Bochkareva E, Korolev S, Bochkarev A. 2000. The role for zinc in replication protein A. J Biol Chem 275: 27332-27338.
    • (2000) J Biol Chem , vol.275 , pp. 27332-27338
    • Bochkareva, E.1    Korolev, S.2    Bochkarev, A.3
  • 9
    • 0035253862 scopus 로고    scopus 로고
    • Structure of the major single-stranded DNA-binding domain of replication protein A suggests a dynamic mechanism for DNA binding
    • Bochkareva E, Belegu V, Korolev S, Bochkarev A. 2001. Structure of the major single-stranded DNA-binding domain of replication protein A suggests a dynamic mechanism for DNA binding. EMBO J 20: 612-618.
    • (2001) EMBO J , vol.20 , pp. 612-618
    • Bochkareva, E.1    Belegu, V.2    Korolev, S.3    Bochkarev, A.4
  • 10
    • 0037007223 scopus 로고    scopus 로고
    • Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA
    • Bochkareva E, Korolev S, Lees-Miller SP, Bochkarev A. 2002. Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA. EMBO J 21: 1855-1863.
    • (2002) EMBO J , vol.21 , pp. 1855-1863
    • Bochkareva, E.1    Korolev, S.2    Lees-Miller, S.P.3    Bochkarev, A.4
  • 11
    • 0030848209 scopus 로고    scopus 로고
    • Role of protein-protein interactions in the function of replication protein A (RPA): RPA modulates the activity of DNA polymerase a by multiple mechanisms
    • Braun KA, Lao Y, He Z, Ingles CJ, Wold MS. 1997. Role of protein-protein interactions in the function of replication protein A (RPA): RPA modulates the activity of DNA polymerase a by multiple mechanisms. Biochemistry 36: 8443-8454.
    • (1997) Biochemistry , vol.36 , pp. 8443-8454
    • Braun, K.A.1    Lao, Y.2    He, Z.3    Ingles, C.J.4    Wold, M.S.5
  • 12
    • 0031753251 scopus 로고    scopus 로고
    • Identification and characterization of the fourth single-stranded-DNA binding domain of replication protein A
    • Brill SJ, Bastin-Shanower S. 1998. Identification and characterization of the fourth single-stranded-DNA binding domain of replication protein A. Mol Cell Biol 18: 7225-7234.
    • (1998) Mol Cell Biol , vol.18 , pp. 7225-7234
    • Brill, S.J.1    Bastin-Shanower, S.2
  • 13
    • 34447552566 scopus 로고    scopus 로고
    • Structural characterization of human RPA sequential binding to single-stranded DNA using ssDNA as a molecular ruler
    • Cai L, Roginskaya M, Qu Y, Yang Z, Xu Y, Zou Y. 2007. Structural characterization of human RPA sequential binding to single-stranded DNA using ssDNA as a molecular ruler. Biochemistry 46: 8226-8233.
    • (2007) Biochemistry , vol.46 , pp. 8226-8233
    • Cai, L.1    Roginskaya, M.2    Qu, Y.3    Yang, Z.4    Xu, Y.5    Zou, Y.6
  • 14
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project, Number 4
    • Collaborative Computational Project, Number 4. 1994. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50: 760-763.
    • (1994) Acta Crystallogr D Biol Crystallogr , vol.50 , pp. 760-763
  • 15
  • 16
    • 33749134033 scopus 로고    scopus 로고
    • A dynamic model for replication protein A (RPA) function in DNA processing pathways
    • Fanning E, Klimovich V, Nager AR. 2006. A dynamic model for replication protein A (RPA) function in DNA processing pathways. Nucleic Acids Res 34: 4126-4137.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4126-4137
    • Fanning, E.1    Klimovich, V.2    Nager, A.R.3
  • 17
    • 77954589779 scopus 로고    scopus 로고
    • Oligonucleotide/oligosaccharide-binding fold proteins: A growing family of genome guardians
    • Flynn RL, Zou L. 2010. Oligonucleotide/oligosaccharide-binding fold proteins: A growing family of genome guardians. Crit Rev Biochem Mol Biol 45: 266-275.
    • (2010) Crit Rev Biochem Mol Biol , vol.45 , pp. 266-275
    • Flynn, R.L.1    Zou, L.2
  • 18
    • 0023260905 scopus 로고
    • P53 and DNA polymerase a compete for binding to SV40 T antigen
    • Gannon JV, Lane DP. 1987. P53 and DNA polymerase a compete for binding to SV40 T antigen. Nature 329: 456-458.
    • (1987) Nature , vol.329 , pp. 456-458
    • Gannon, J.V.1    Lane, D.P.2
  • 19
    • 0029798240 scopus 로고    scopus 로고
    • Functional domains of the 70-kilodalton subunit of human replication protein A
    • Gomes XV, Wold MS. 1996. Functional domains of the 70-kilodalton subunit of human replication protein A. Biochemistry 35: 10558-10568.
    • (1996) Biochemistry , vol.35 , pp. 10558-10568
    • Gomes, X.V.1    Wold, M.S.2
  • 20
    • 0029868656 scopus 로고    scopus 로고
    • Proteolytic mapping of human replication protein A: Evidence for multiple structural domains and a conformational change upon interaction with single-stranded DNA
    • Gomes XV, Henricksen LA, Wold MS. 1996. Proteolytic mapping of human replication protein A: Evidence for multiple structural domains and a conformational change upon interaction with single-stranded DNA. Biochemistry 35: 5586-5595.
    • (1996) Biochemistry , vol.35 , pp. 5586-5595
    • Gomes, X.V.1    Henricksen, L.A.2    Wold, M.S.3
  • 21
    • 0033060916 scopus 로고    scopus 로고
    • Interactions of the papovavirus DNA replication initiator proteins, bovine papillomavirus type 1 E1 and simian virus 40 large T antigen, with human replication protein A
    • Han Y, Loo YM, Militello KT, Melendy T. 1999. Interactions of the papovavirus DNA replication initiator proteins, bovine papillomavirus type 1 E1 and simian virus 40 large T antigen, with human replication protein A. J Virol 73: 4899-4907.
    • (1999) J Virol , vol.73 , pp. 4899-4907
    • Han, Y.1    Loo, Y.M.2    Militello, K.T.3    Melendy, T.4
  • 24
    • 0036349930 scopus 로고    scopus 로고
    • Analysis of the human replication protein A:Rad52 complex: Evidence for crosstalk between RPA32, RPA70, Rad52 and DNA
    • Jackson D, Dhar K, Wahl JK, Wold MS, Borgstahl GE. 2002. Analysis of the human replication protein A:Rad52 complex: Evidence for crosstalk between RPA32, RPA70, Rad52 and DNA. J Mol Biol 321: 133-148.
    • (2002) J Mol Biol , vol.321 , pp. 133-148
    • Jackson, D.1    Dhar, K.2    Wahl, J.K.3    Wold, M.S.4    Borgstahl, G.E.5
  • 26
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou JY, Cowan SW, Kjeldgaard M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47: 110-119.
    • (1991) Acta Crystallogr A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 27
    • 0027939024 scopus 로고
    • Interactions of human replication protein A with oligonucleotides
    • Kim C, Paulus BF, Wold MS. 1994. Interactions of human replication protein A with oligonucleotides. Biochemistry 33: 14197-14206.
    • (1994) Biochemistry , vol.33 , pp. 14197-14206
    • Kim, C.1    Paulus, B.F.2    Wold, M.S.3
  • 28
    • 0039252769 scopus 로고    scopus 로고
    • Replication protein A interactions with DNA. 2. Characterization of double-stranded DNA-binding/helix-destabilization activities and the role of the zinc-finger domain in DNA interactions
    • Lao Y, Lee CG, Wold MS. 1999. Replication protein A interactions with DNA. 2. Characterization of double-stranded DNA-binding/helix-destabilization activities and the role of the zinc-finger domain in DNA interactions. Biochemistry 38: 3974-3984.
    • (1999) Biochemistry , vol.38 , pp. 3974-3984
    • Lao, Y.1    Lee, C.G.2    Wold, M.S.3
  • 29
    • 0842304459 scopus 로고    scopus 로고
    • Recruitment of replication protein A by the papillomavirus E1 protein and modulation by singlestranded DNA
    • Loo YM, Melendy T. 2004. Recruitment of replication protein A by the papillomavirus E1 protein and modulation by singlestranded DNA. J Virol 78: 1605-1615.
    • (2004) J Virol , vol.78 , pp. 1605-1615
    • Loo, Y.M.1    Melendy, T.2
  • 30
    • 33846975786 scopus 로고    scopus 로고
    • The crystal structure of the SV40 T-antigen origin binding domain in complex with DNA
    • doi:10.1371/journal.pbio.0050023
    • Meinke G, Phelan P, Moine S, Bochkareva E, Bochkarev A, Bullock PA, Bohm A. 2007. The crystal structure of the SV40 T-antigen origin binding domain in complex with DNA. PLoS Biol 5: e23. doi:10.1371/journal.pbio.0050023.
    • (2007) PLoS Biol , vol.5
    • Meinke, G.1    Phelan, P.2    Moine, S.3    Bochkareva, E.4    Bochkarev, A.5    Bullock, P.A.6    Bohm, A.7
  • 31
    • 0027479161 scopus 로고
    • OB(oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for nonhomologous sequences
    • Murzin AG. 1993. OB(oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for nonhomologous sequences. EMBO J 12: 861-867.
    • (1993) EMBO J , vol.12 , pp. 861-867
    • Murzin, A.G.1
  • 32
    • 0032556870 scopus 로고    scopus 로고
    • Rad52 protein stimulates DNA strand exchange by Rad51 and replication protein A
    • New JH, Sugiyama T, Zaitseva E, Kowalczykowski SC. 1998. Rad52 protein stimulates DNA strand exchange by Rad51 and replication protein A. Nature 391: 407-410.
    • (1998) Nature , vol.391 , pp. 407-410
    • New, J.H.1    Sugiyama, T.2    Zaitseva, E.3    Kowalczykowski, S.C.4
  • 34
    • 57649114600 scopus 로고    scopus 로고
    • Dynamic removal of replication protein A by Dna2 facilitates primer cleavage during Okazaki fragment processing in Saccharomyces cerevisiae
    • Stewart JA, Miller AS, Campbell JL, Bambara RA. 2008. Dynamic removal of replication protein A by Dna2 facilitates primer cleavage during Okazaki fragment processing in Saccharomyces cerevisiae. J Biol Chem 283: 31356-31365.
    • (2008) J Biol Chem , vol.283 , pp. 31356-31365
    • Stewart, J.A.1    Miller, A.S.2    Campbell, J.L.3    Bambara, R.A.4
  • 36
    • 0034551795 scopus 로고    scopus 로고
    • Species specificity of human RPA in simian virus 40 DNA replication lies in T-antigen-dependent RNA primer synthesis
    • Wang M, Park JS, Ishiai M, Hurwitz J, Lee SH. 2000. Species specificity of human RPA in simian virus 40 DNA replication lies in T-antigen-dependent RNA primer synthesis. Nucleic Acids Res 28: 4742-4749.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4742-4749
    • Wang, M.1    Park, J.S.2    Ishiai, M.3    Hurwitz, J.4    Lee, S.H.5
  • 37
    • 0030908093 scopus 로고    scopus 로고
    • Replication protein A: A heterotrimeric, singlestranded DNA-binding protein required for eukaryotic DNA metabolism
    • Wold MS. 1997. Replication protein A: A heterotrimeric, singlestranded DNA-binding protein required for eukaryotic DNA metabolism. Annu Rev Biochem 66: 61-92.
    • (1997) Annu Rev Biochem , vol.66 , pp. 61-92
    • Wold, M.S.1
  • 38
    • 0242507460 scopus 로고    scopus 로고
    • Replication protein A interactions with DNA: Differential binding of the core domains and analysis of the DNA interaction surface
    • Wyka IM, Dhar K, Binz SK, Wold MS. 2003. Replication protein A interactions with DNA: Differential binding of the core domains and analysis of the DNA interaction surface. Biochemistry 42: 12909-12918.
    • (2003) Biochemistry , vol.42 , pp. 12909-12918
    • Wyka, I.M.1    Dhar, K.2    Binz, S.K.3    Wold, M.S.4
  • 39
    • 0037195277 scopus 로고    scopus 로고
    • Dimerization of human XPA and formation of XPA2-RPA protein complex
    • Yang ZG, Liu Y, Mao LY, Zhang JT, Zou Y. 2002. Dimerization of human XPA and formation of XPA2-RPA protein complex. Biochemistry 41: 13012-13020.
    • (2002) Biochemistry , vol.41 , pp. 13012-13020
    • Yang, Z.G.1    Liu, Y.2    Mao, L.Y.3    Zhang, J.T.4    Zou, Y.5
  • 40
    • 14144253224 scopus 로고    scopus 로고
    • The BRCA2 homologue Brh2 nucleates RAD51 filament formation at a dsDNA-ssDNA junction
    • Yang H, Li Q, Fan J, Holloman WK, Pavletich NP. 2005. The BRCA2 homologue Brh2 nucleates RAD51 filament formation at a dsDNA-ssDNA junction. Nature 433: 653-657.
    • (2005) Nature , vol.433 , pp. 653-657
    • Yang, H.1    Li, Q.2    Fan, J.3    Holloman, W.K.4    Pavletich, N.P.5
  • 41
    • 0033230401 scopus 로고    scopus 로고
    • Multiple competition reactions for RPA order the assembly of the DNA polymerase d holoenzyme
    • Yuzhakov A, Kelman Z, Hurwitz J, O'Donnell M. 1999. Multiple competition reactions for RPA order the assembly of the DNA polymerase d holoenzyme. EMBO J 18: 6189-6199.
    • (1999) EMBO J , vol.18 , pp. 6189-6199
    • Yuzhakov, A.1    Kelman, Z.2    Hurwitz, J.3    O'Donnell, M.4
  • 42
    • 33745607897 scopus 로고    scopus 로고
    • Functions of human replication protein A (RPA): From DNA replication to DNA damage and stress responses
    • Zou Y, Liu Y, Wu X, Shell SM. 2006. Functions of human replication protein A (RPA): From DNA replication to DNA damage and stress responses. J Cell Physiol 208: 267-273.
    • (2006) J Cell Physiol , vol.208 , pp. 267-273
    • Zou, Y.1    Liu, Y.2    Wu, X.3    Shell, S.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.