Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism

Journal of Biological Chemistry

Volumn 271, Issue 41, 1996, Pages 25089-25098

  Gunz, Daniela ^a   Hess, Martin T ^a   Naegeli, Hanspeter ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ANTHRAMYCIN; METHOXSALEN; PLASMID DNA; RACHELMYCIN;

ARTICLE; CONTROLLED STUDY; DNA ADDUCT; DNA DAMAGE; DNA HELIX; EXCISION REPAIR; HELA CELL; HUMAN; HUMAN CELL; MOLECULAR RECOGNITION; PRIORITY JOURNAL; THERMODYNAMICS; ULTRAVIOLET IRRADIATION;

2-ACETYLAMINOFLUORENE; 7,8-DIHYDRO-7,8-DIHYDROXYBENZO(A)PYRENE 9,10-OXIDE; ANTHRAMYCIN; ANTIBIOTICS, ANTINEOPLASTIC; BASE SEQUENCE; BINDING SITES; BINDING, COMPETITIVE; CELL LINE; DNA; DNA ADDUCTS; DNA DAMAGE; DNA REPAIR; HELA CELLS; HUMANS; INDOLES; LEUCOMYCINS; METHOXSALEN; MUTAGENESIS, SITE-DIRECTED; PLASMIDS; RESTRICTION MAPPING; SUBSTRATE SPECIFICITY; THERMODYNAMICS; ULTRAVIOLET RAYS;

MAMMALIA;

EID: 0029840823     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.271.41.25089     Document Type: Article

References (56)

1. Friedberg, E. C., Walker, G. C., and Siede, W. (1995) DNA Repair and Mutagenesis, pp. 283-365, American Society for Microbiology, Washington, D. C.
2. Sancar, A. (1995) J. Biol. Chem. 270, 15915-15918
3. Grossman, L., and Thiangalingam, S. (1993) J. Biol. Chem. 268, 16871-16874
4. Tanaka, K., and Wood, R. D. (1994) Trends Biochem. Sci. 19, 83-86
5. Van Houten, B. (1990) Microbiol. Rev. 54, 18-51
6. Huang, J.-C., Svoboda, D. L., Reardon, J. T., and Sancar, A. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 3664-3668
7. Cleaver, J. E., and Kraemer, K. H. (1989) in The Metabolic Basis of Inherited Disease (Scriver, C. R., Beaudet, A. L., Sly, W. S., and Valle, D., eds) pp. 2949-2971, McGraw-Hill Inc., New York
8. Hoeijmakers, J. H. J. (1994) Eur. J. Cancer 30, 1912-1921
9. Cleaver, J. E. (1968) Nature 218, 652-656
10. Huang, J.-C., Hsu, D. S., Kazantsev, A., and Sancar, A. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 12213-12217
11. Aboussekhra, A., Biggerstaff, M., Shivji, M. K. K., Vilpo, J. A., Moncollin, V., Podust, V. A., Protic, Hübscher, U., Egly, J.-M., and Wood, R. D. (1995) Cell 80, 859-868
12. Mu, D., Park, C.-H., Matsunaga, T., Hsu, D. S., Reardon, J. T., and Sancar, A. (1995) J. Biol. Chem. 270, 2415-2418
13. He, Z., Henricksen, L. A., Wold, M. S., and Ingles, C. J. (1995) Nature 374, 566-569
14. O'Handley, S. F., Sanford, S. G., Xu, R., Lester, C. C., Hingerty, B. E., Broyde, S., and Krugh, T. R. (1993) Biochemistry 32, 2481-2497
15. Garcia, A., Lambert, I. B., and Fuchs, R. P. P. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 5989-5993
16. Zou, Y., Liu, T.-M., Geacintov, N. E., and Van Houten, B. (1995) Biochemistry 34, 13582-13593
17. Xu, R., Birke, S., Carberry, S. E., Geacintov, N. E., Swenberg, C. E., and Harvey, R. G. (1992) Nucleic Acids Res. 20, 6167-6176
18. Rahn, R. O., and Patrick, M. H. (1976) in Photochemistry and Photobiology of Nucleic Acids (Wang, S. Y., ed) Vol. 2, pp. 97-145, Academic Press, NY
19. Shi, Y.-B., and Hearst, J. E. (1986) Biochemistry 25, 5895-5902
20. Shi, Y.-B, Griffith, J., and Hearst, J. E. (1988) Nucleic Acids Res. 16, 8945-8952
21. Hurley, L. H., and Thurston, D. E. (1984) Pharmacol Res. 1, 53-59
22. Reynolds, V. L., McGovren, J. P., and Hurley, L. H. (1986) J. Antibiot. (Tokyo) 39, 319-334
23. Schwartz, A., Marrot, L., and Leng, M. (1989) J. Mol. Biol. 207, 445-450
24. de los Santos, C., Cosman, M., Hingerty, B. E., Ibanez, V., Margulis, L. A., Geacintov, N. E., Broyde, S., and Patel, D. J. (1992) Biochemistry 31, 5245-5252
25. Cosman, M., de los Santos, C., Fiala, R., Hingerty, B. E., Ibanez, V., Luna, E., Harvey, R., Geacintov, N. E., Broyde, S., and Patel, D. J. (1993) Biochemistry 32, 4145-4155
26. Cadet, J., Anselmino, C., Douki, T., and Voituriez, L. (1992) J. Photochem. Photobiol. B Biol. 15, 277-298
27. Hearst, J. E., Isaacs, S. T., Kanne, D., Rapoport, H., and Straub, K. (1984) Q. Rev. Biophys. 17, 1-44
28. Spielmann, H. P., Dwyer, T. J., Hearst, J. E., and Wemmer, D. E. (1995) Biochemistry 34, 12937-12953
29. Krugh, T. R., Graves, D. E., and Stone, M. (1989) Biochemistry 28, 9988-9994
30. Lee, C.-S., Sun, D., Kizu, R., and Hurley, L. H. (1991) Chem. Res. Toxicol. 4, 203-213
31. Hess, M. T., Gunz, D., and Naegeli, H. (1996) Nucleic Acids Res. 24, 824-828
32. Manley, J. L., Fire, A., Samuels, M., and Sharp, P. A. (1983) Methods Enzymol. 101, 568-582
33. Wood, R. D., Robins, P., and Lindahl, T. (1988) Cell 53, 97-106
34. Wood, R. D., and Coverley, D. (1991) BioEssays 13, 447-453
35. Hanawalt, P. C. (1994) Science 266, 1957-1958
36. Hess, M. T., Schwitter, U., Petretta, M., Giese, B., and Naegeli, H. (1996) Chem. Biol. 3, 121-128
37. Matsumoto, Y., and Bogenhagen, D. F. (1989) Mol. Cell. Biol. 9, 3750-3757
38. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
39. Sun, D., and Hurley, L. H. (1992) J. Med. Chem. 35, 1773-1782
40. Biggerstaff, M., Robins, P., Coverley, D., and Wood, R. D. (1991) Mutat. Res. 254, 217-224
41. Pierce, J. R., Case, R., and Tang, M.-S. (1989) Biochemistry 28, 5821-5826
42. Boles, T. C., and Hogan, M. E. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 5623-5627
43. Kohn, K. W., and Spears, C. L. (1970) J. Mol. Biol. 51, 551-572
44. Swenson, D. H., Li, L. H., Hurley, L. H., Rokem, J. S., Petzold, G. L., Dayton, B. D., Wallace, T. L., Lin, A. H., and Krueger, W. C. (1982) Cancer Res. 42, 2821-2828
45. Mitchell, D. L. (1988) Photochem. Photobiol. 48, 51-57
46. Szymkowski, D. E., Lawrence, C. W., and Wood, R. D. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 9823-9827
47. Hansson, J., Munn, M., Rupp, W. D., Kahn, R., and Wood, R. D. (1989) J. Biol. Chem. 264, 21788-21792
48. Lee, S.-H., Kim, D.-K., and Drissi, R. (1995) J. Biol. Chem. 270, 21800-21805
49. Li, L., Lu, X., Peterson, C. A., and Legerski, R. J. (1995) Mol. Cell. Biol. 15, 5396-5402
50. Suquet, C., Mitchell, D. L., and Smerdon, M. J. (1995) J. Biol. Chem. 270, 16507-16509
51. Taylor, J.-S., Garrett, D. S., Brockie, I. R., Svoboda, D. L., and Telser, J. (1990) Biochemistry 29, 8858-8866
52. Kim, J.-K., and Choi, B.-S. (1995) Bur. J. Biochem. 228, 849-854
53. Suh, M., Ariese, F., Small, G. J., Jankowiak, R., Hewer, A., and Phillips, D. H. (1995) Carcinogenesis 16, 2561-2569
54. Kalnik, M. W., Chang, C.-N., Johnson, F., Grollman, A. P., and Patel, D. J. (1989) Biochemistry 28, 3373-3383
55. Nazimiec, M., Grossman, L., and Tang, M. (1992) J. Biol. Chem. 267, 24716-24724
56. Lin, J.-J., and Sancar, A. (1992) Mol. Microbiol. 6, 2219-2224