Ordered Conformational Changes in Damaged DNA Induced by Nucleotide Excision Repair Factors

Journal of Biological Chemistry

Volumn 279, Issue 18, 2004, Pages 19074-19083

  Tapias, Angels ^a   Auriol, Jerome ^a   Forget, Diane ^b   Enzlin, Jacqueline H ^c   Schärer, Orlando D ^c   Coin, Frederic ^a   Coulombe, Benoit ^b   Egly, Jean Marc ^a  

^a INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^b CLIN RESEARCH INSTITUTE OF MONTREAL   (Canada)

^c UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BIOSYNTHESIS; CONFORMATIONS; DNA;

DUAL INCISION; NUCLEOTIDE EXCISION REPAIR (NER);

BIOCHEMISTRY;

DNA; ENDONUCLEASE; PROTEIN; PROTEIN HR23B; RAB PROTEIN; REPLICATION PROTEIN A; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR IIH; UNCLASSIFIED DRUG; XERODERMA PIGMENTOSUM GROUP A PROTEIN; XERODERMA PIGMENTOSUM GROUP F PROTEIN; XERODERMA PIGMENTOSUM GROUP G PROTEIN;

ANIMAL CELL; ARTICLE; CONFORMATIONAL TRANSITION; DNA DAMAGE; DNA FOOTPRINTING; DNA REPAIR; DNA SYNTHESIS; EXCISION REPAIR; GENOTOXICITY; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL;

ADENOSINE TRIPHOSPHATE; DNA; DNA DAMAGE; DNA REPAIR; DNA REPAIR ENZYMES; DNA-BINDING PROTEINS; ENDONUCLEASES; HUMANS; NUCLEAR PROTEINS; NUCLEIC ACID CONFORMATION; REPLICATION PROTEIN A; TRANSCRIPTION FACTOR TFIIH; TRANSCRIPTION FACTORS; TRANSCRIPTION FACTORS, TFII; XERODERMA PIGMENTOSUM GROUP A PROTEIN;

ANIMALIA;

EID: 2442586630     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M312611200     Document Type: Article

References (59)

1. Bohr, V. A., Smith, C. A., Okumoto, D. S., and Hanawalt, P. C. (1985) Cell 40, 359-369
2. Hoeijmakers, J. H. (2001) Nature 411, 366-374
3. Mellon, I., Spivak, G., and Hanawalt, P. C. (1987) Cell 51, 241-249
4. De Laat, W. L., Jaspers, N. G., and Hoeijmakers, J. H. (1999) Genes Dev. 13, 768-785
5. Bootsma, D., Kraemer, K. H., Cleaver, J. E., and Hoeijmakers, J. H. J. (1998) in The Genetic Basis of Human Cancer (Vogelstein, B., and Kinzler, K. W., eds), pp. 245-274, McGraw-Hill Inc., New York
6. Lehmann, A. R. (2001) Genes Dev. 15, 15-23
7. Araujo, S. J., Tirode, F., Coin, F., Pospiech, H., Syvaoja, J. E., Stucki, M., Hubscher, U., Egly, J. M., and Wood, R. D. (2000) Genes Dev. 14, 349-359
8. Sancar, A. (1996) Annu. Rev. Biochem. 65, 43-81
9. Sugasawa, K., Ng, J., Masutani, C., Iwai, S., van der Spek, P., Eker, A., Hanaoka, F., Bootsma, D., and Hoeijmakers, J. (1998) Mol. Cell 2, 223-232
10. Volker, M., Mone, M. J., Karmakar, P., van Hoffen, A., Schul, W., Vermeulen, W., Hoeijmakers, J. H., van Driel, R., van Zeeland, A. A., and Mullenders, L. H. (2001) Mol. Cell 8, 213-224
11. Riedl, T., Hanaoka, F., and Egly, J. M. (2003) EMBO J. 22, 5293-5303
12. O'Donnovan, A., Davies, A. A., Moggs, J. G., West, S. C., and Wood, R. D. (1994) Nature 371, 432-435
13. Evans, E., Fellows, J., Coffer, A., and Wood, R. D. (1997) EMBO J. 16, 625-638
14. de Laat, W. L., Appeldoorn, E., Jaspers, N. G. J., and Hoeijmakers, J. H. J. (1998) J. Biol. Chem. 273, 7835-7842
15. Sijbers, A. M., de Laat, W. L., Ariza, R. R., Biggerstaff, M., Wei, Y. F., Moggs, J. G., Carter, K. C., Shell, B. K., Evans, E., de Jong, M. C., Rademakers, S., de Rooij, J., Jaspers, N. G., Hoeijmakers, J. H., and Wood, R. D. (1996) Cell 86, 811-822
16. Shivji, M. K. K., Podust, V. N., Hubsher, U., and Wood, R. D. (1995) Biochemistry 34, 5011-5017
17. Svejstrup, J. Q., Wang, Z., Feaver, W. J., Wu, X., Bushnell, D. A., Donahue, T. F., Friedberg, E. C., and Kornberg, R. D. (1995) Cell 80, 21-28
18. Houtsmuller, A. B., Rademakers, S., Nigg, A. L., Hoogstraten, D., Hoeijmakers, J. H., and Vermeulen, W. (1999) Science 284, 958-961
19. Maldonado, E., Shiekhattar, R., Sheldon, M., Cho, H., Drapkin, R., Rickert, P., Lees, E., Anderson, C. W., Linn, S., and Reinberg, D. (1996) Nature 381, 86-89
20. Araujo, S. J., Nigg, E. A., and Wood, R. D. (2001) Mol. Cell. Biol. 21, 2281-2291
21. Reardon, J. T., and Sancar, A. (2002) Mol. Cell. Biol. 22, 5938-5945
22. Henricksen, L. A., Umbricht, C. B., and Wold, M. S. (1994) J. Biol. Chem. 269, 11121-11132
23. O'Donovan, A., Scherly, D., Clarkson, S. G., and Wood, R. D. (1994) J. Biol. Chem. 269, 15965-15968
24. Sugasawa, K., Masutani, C., Uchida, A., Maekawa, T., van der Spek, P. J., Bootsma, D., Hoeijmakers, J. H., and Hanaoka, F. (1996) Mol. Cell. Biol. 16, 4852-4861
25. Gerard, M., Fischer, L., Moncollin, V., Chipoulet, J. M., Chambon, P., and Egly, J. M. (1991) J. Biol. Chem. 266, 20940-20945
26. Frit, P., Kwon, K., Coin, F., Auriol, J., Dubaele, S., Salles, B., and Egly, J. M. (2002) Mol. Cell 10, 1391-1401
27. Sambrook, J., Fritsch, E., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, pp. 6.46-6.49, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
28. Douziech, M., Coin, F., Chipoulet, J. M., Arai, Y., Ohkuma, Y., Egly, J. M., and Coulombe, B. (2000) Mol. Cell. Biol. 20, 8168-8177
29. Robert, F., and Coulombe, B. (2001) Methods Mol. Biol. 148, 383-393
30. Jiang, Y., and Gralla, J. D. (1995) J. Biol. Chem. 270, 1277-1281
31. Nocentini, S., Coin, F., Saijo, M., Tanaka, K., and Egly, J.-M. (1997) J. Biol. Sci. 272, 22991-22994
32. Masutani, C., Sugasawa, K., Yanagisawa, J., Sonoyama, T., Ui, M., Enomoto, T., Takio, K., Tanaka, K., van der Spek, P. J., Bootsma, D., Hoeijmakers, J. H. J., and Hanaoka, F. (1994) EMBO J. 13, 1831-1843
33. Schaeffer, L., Roy, R., Humbert, S., Moncollin, V., Vermeulen, W., Hoeijmakers, J. H. J., Chambon, P., and Egly, J. M. (1993) Science 260, 58-63
34. Winkler, G. S., Araujo, S. J., Fiedler, U., Vermeulen, W., Coin, F., Egly, J. M., Hoeijmakers, J. H., Wood, R. D., Timmers, H. T., and Weeda, G. (2000) J. Biol. Chem. 275, 4258-4266
35. Coin, F., Bergmann, E., Tremeau-Bravard, A., and Egly, J. M. (1999) EMBO 18, 1357-1366
36. Evans, E., Moggs, J. G., Hwang, J. R., Egly, J.-M., and Wood, R. D. (1997) EMBO J. 16, 6559-6573
37. Schweizer, U., Hey, T., Lipps, G., and Krauss, G. (1999) Nucleic Acids Res. 27, 3183-3189
38. Hermanson-Miller, I. L., and Turchi, J. J. (2002) Biochemistry 41, 2402-2408
39. Enzlin, J. H., and Scharer, O. D. (2002) EMBO J. 21, 2045-2053
40. Persinger, J., and Bartholomew, B. (2001) Methods Mol. Biol. 148, 363-381
41. Bartholomew, B., Kassavetis, G. A., Braun, B. R., and Geiduschek, E. P. (1990) EMBO J. 9, 2197-2205
42. Constantinou, A., Gunz, D., Evans, E., Lalle, P., Bates, P. A., Wood, R. D., and Clarkson, S. G. (1999) J. Biol. Chem. 274, 5637-5648
43. Mu, D., Wakasugi, M., Hsu, D. S., and Sancar, A. (1997) J. Biol. Chem. 272, 28971-28979
44. Anin, M.-F., and Leng, M. (1990) Nucleic Acids Res. 18, 4395-4400
45. Bellon, S. F., Coleman, J. H., and Lippard, S. J. (1991) Biochemistry 40, 8026-8035
46. van Garderen, C. J., and van Houte, L. P. (1994) Eur. J. Biochem. 225, 1169-1179
47. Sugasawa, K., Ng, J. M., Masutani, C., Maekawa, T., Uchida, A., van der Spek, P. J., Eker, A. P., Rademakers, S., Visser, C., Aboussekhra, A., Wood, R. D., Hanaoka, F., Bootsma, D., and Hoeijmakers, J. H. (1997) Mol. Cell. Biol. 17, 6924-6931
48. Batty, D., Rapic'-Otrin, V., Levine, A. S., and Wood, R. D. (2000) J. Mol. Biol. 300, 275-290
49. Yokoi, M., Masutani, C., Maekawa, T., Sugasawa, K., Ohkuma, Y., and Hanaoka, F. (2000) J. Biol. Chem. 275, 9870-9875
50. Jones, C. J., and Wood, R. D. (1993) Biochemistry 32, 12096-12104
51. Wakasugi, M., and Sancar, A. (1999) J. Biol. Chem. 274, 18759-18768
52. Patrick, S. M., and Turchi, J. J. (1998) Biochemistry 37, 8808-8815
53. Missura, M., Buterin, T., Hindges, R., Hubscher, U., Kasparkova, J., Brabec, V., and Naegeli, H. (2001) EMBO J. 20, 3554-3564
54. Aboussekhra, A., Biggerstaff, M., Shivji, M. K. K., Vilpo, J. A., Moncollin, V., Podust, V. N., Protic, M., Hübscher, U., Egly, J. M., and Wood, R. D. (1995) Cell 80, 859-868
55. Mu, D., Park, C. H., Matsunaga, T., Hsu, D. S., Reardon, J. T., and Sancar, A. (1995) J. Biol. Chem. 270, 2415-2418
56. de Laat, W. L., Appeldoorn, E., Sugasawa, K., Weterings, E., Jaspers, N. G., and Hoeijmakers, J. H. (1998) Genes Dev. 12, 2598-2609
57. Yuzhakov, A., Kelman, Z., Hurwitz, J., and O'Donnell, M. (1999) EMBO J. 18, 6189-6199
58. Hohl, M., Thorel, F., Clarkson, S. G., and Scharer, O. D. (2003) J. Biol. Chem. 278, 19500-19508
59. Forget, D, Langelier, M. F., Thérien C., Trinh, V., and Coulombe, B. (2004), Mol. Cell. Biol. 24, 1122-1131