New Histone Incorporation Marks Sites of UV Repair in Human Cells

Cell

Volumn 127, Issue 3, 2006, Pages 481-493

  Polo, Sophie E ^a   Roche, Danièle ^a   Almouzni, Geneviève ^a  

^a INSTITUT CURIE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN ASSEMBLY FACTOR 1; PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CELL CYCLE S PHASE; CHROMATIN; DNA DAMAGE; EPIGENETICS; EXCISION REPAIR; HUMAN; PRIORITY JOURNAL; ULTRAVIOLET IRRADIATION;

EID: 33750449326     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cell.2006.08.049     Document Type: Article

References (64)

1. Adkins M.W., and Tyler J.K. The histone chaperone Asf1p mediates global chromatin disassembly in vivo. J. Biol. Chem. 279 (2004) 52069-52074
2. Ahmad K., and Henikoff S. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell 9 (2002) 1191-1200
3. Carroll J.S., Prall O.W., Musgrove E.A., and Sutherland R.L. A pure estrogen antagonist inhibits cyclin E-Cdk2 activity in MCF-7 breast cancer cells and induces accumulation of p130-E2F4 complexes characteristic of quiescence. J. Biol. Chem. 275 (2000) 38221-38229
4. Cleaver J.E. Cancer in xeroderma pigmentosum and related disorders of DNA repair. Nat. Rev. Cancer 5 (2005) 564-573
5. Conconi A., Paquette M., Fahy D., Bespalov V.A., and Smerdon M.J. Repair-independent chromatin assembly onto active ribosomal genes in yeast after UV irradiation. Mol. Cell. Biol. 25 (2005) 9773-9783
6. de Laat W.L., Jaspers N.G., and Hoeijmakers J.H. Molecular mechanism of nucleotide excision repair. Genes Dev. 13 (1999) 768-785
7. Friedberg E.C. How nucleotide excision repair protects against cancer. Nat. Rev. Cancer 1 (2001) 22-33
8. Gaillard P.H., Martini E.M., Kaufman P.D., Stillman B., Moustacchi E., and Almouzni G. Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I. Cell 86 (1996) 887-896
9. Gaillard P.H., Moggs J.G., Roche D.M., Quivy J.P., Becker P.B., Wood R.D., and Almouzni G. Initiation and bidirectional propagation of chromatin assembly from a target site for nucleotide excision repair. EMBO J. 16 (1997) 6281-6289
10. Game J.C., and Kaufman P.D. Role of Saccharomyces cerevisiae chromatin assembly factor-I in repair of ultraviolet radiation damage in vivo. Genetics 151 (1999) 485-497
11. Gérard A., Polo S.E., Roche D., and Almouzni G. Methods for studying chromatin assembly coupled to DNA repair. Methods Enzymol. 409 (2006) 358-374
12. Green C.M., and Almouzni G. When repair meets chromatin. First in series on chromatin dynamics. EMBO Rep. 3 (2002) 28-33
13. Green C.M., and Almouzni G. Local action of the chromatin assembly factor CAF-1 at sites of nucleotide excision repair in vivo. EMBO J. 22 (2003) 5163-5174
14. Groth A., Ray-Gallet D., Quivy J.P., Lukas J., Bartek J., and Almouzni G. Human Asf1 regulates the flow of S phase histones during replicational stress. Mol. Cell 17 (2005) 301-311
15. Gunjan A., Paik J., and Verreault A. Regulation of histone synthesis and nucleosome assembly. Biochimie 87 (2005) 625-635
16. Henikoff S., and Ahmad K. Assembly of variant histones into chromatin. Annu. Rev. Cell Dev. Biol. 21 (2005) 133-153
17. Hoek M., and Stillman B. Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo. Proc. Natl. Acad. Sci. USA 100 (2003) 12183-12188
18. Janicki S.M., Tsukamoto T., Salghetti S.E., Tansey W.P., Sachidanandam R., Prasanth K.V., Ried T., Shav-Tal Y., Bertrand E., Singer R.H., and Spector D.L. From silencing to gene expression: real-time analysis in single cells. Cell 116 (2004) 683-698
19. Jenuwein T., and Allis C.D. Translating the histone code. Science 293 (2001) 1074-1080
20. Kaufman P.D., and Almouzni G. Chromatin assembly. In: DePamphilis M. (Ed). DNA Replication and Human Disease (2006), Cold Spring Harbor Laboratory Press, Woodbury, NY 121-140
21. Kaufman P.D., Kobayashi R., Kessler N., and Stillman B. The p150 and p60 subunits of chromatin assembly factor I - a molecular link between newly synthesized histones and DNA replication. Cell 81 (1995) 1105-1114
22. Kaufman P.D., Kobayashi R., and Stillman B. Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I. Genes Dev. 11 (1997) 345-357
23. Kornberg R.D. Structure of chromatin. Annu. Rev. Biochem. 46 (1977) 931-954
24. Lewis L.K., Karthikeyan G., Cassiano J., and Resnick M.A. Reduction of nucleosome assembly during new DNA synthesis impairs both major pathways of double-strand break repair. Nucleic Acids Res. 33 (2005) 4928-4939
25. Limoli C.L., and Ward J.F. A new method for introducing double-strand breaks into cellular DNA. Radiat. Res. 134 (1993) 160-169
26. Linger J., and Tyler J.K. The yeast histone chaperone chromatin assembly factor 1 protects against double-strand DNA-damaging agents. Genetics 171 (2005) 1513-1522
27. Little J.B. Genomic instability and bystander effects: a historical perspective. Oncogene 22 (2003) 6978-6987
28. Loyola A., and Almouzni G. Histone chaperones, a supporting role in the limelight. Biochim. Biophys. Acta 1677 (2004) 3-11
29. Lukas C., Falck J., Bartkova J., Bartek J., and Lukas J. Distinct spatiotemporal dynamics of mammalian checkpoint regulators induced by DNA damage. Nat. Cell Biol. 5 (2003) 255-260
30. Martini E., Roche D.M., Marheineke K., Verreault A., and Almouzni G. Recruitment of phosphorylated chromatin assembly factor 1 to chromatin after UV irradiation of human cells. J. Cell Biol. 143 (1998) 563-575
31. Mello J.A., Sillje H.H., Roche D.M., Kirschner D.B., Nigg E.A., and Almouzni G. Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway. EMBO Rep. 3 (2002) 329-334
32. Moggs J.G., Grandi P., Quivy J.P., Jonsson Z.O., Hubscher U., Becker P.B., and Almouzni G. A CAF-1-PCNA-mediated chromatin assembly pathway triggered by sensing DNA damage. Mol. Cell. Biol. 20 (2000) 1206-1218
33. Mone M.J., Volker M., Nikaido O., Mullenders L.H., van Zeeland A.A., Verschure P.J., Manders E.M., and van Driel R. Local UV-induced DNA damage in cell nuclei results in local transcription inhibition. EMBO Rep. 2 (2001) 1013-1017
34. Myung K., Pennaneach V., Kats E.S., and Kolodner R.D. Saccharomyces cerevisiae chromatin-assembly factors that act during DNA replication function in the maintenance of genome stability. Proc. Natl. Acad. Sci. USA 100 (2003) 6640-6645
35. Nabatiyan A., and Krude T. Silencing of chromatin assembly factor 1 in human cells leads to cell death and loss of chromatin assembly during DNA synthesis. Mol. Cell. Biol. 24 (2004) 2853-2862
36. Nabatiyan A., Szuts D., and Krude T. Induction of CAF-1 expression in response to DNA strand breaks in quiescent human cells. Mol. Cell. Biol. 26 (2006) 1839-1849
37. Nakatani Y., and Ogryzko V. Immunoaffinity purification of mammalian protein complexes. Methods Enzymol. 370 (2003) 430-444
38. Okano S., Lan L., Caldecott K.W., Mori T., and Yasui A. Spatial and temporal cellular responses to single-strand breaks in human cells. Mol. Cell. Biol. 23 (2003) 3974-3981
39. Osley M.A. The regulation of histone synthesis in the cell cycle. Annu. Rev. Biochem. 60 (1991) 827-861
40. Peterson C.L., and Cote J. Cellular machineries for chromosomal DNA repair. Genes Dev. 18 (2004) 602-616
41. Polo S.E., Theocharis S.E., Klijanienko J., Savignoni A., Asselain B., Vielh P., and Almouzni G. Chromatin assembly factor-1, a marker of clinical value to distinguish quiescent from proliferating cells. Cancer Res. 64 (2004) 2371-2381
42. Quivy J.P., Roche D., Kirschner D., Tagami H., Nakatani Y., and Almouzni G. A CAF-1 dependent pool of HP1 during heterochromatin duplication. EMBO J. 23 (2004) 3516-3526
43. Reardon J.T., and Sancar A. Nucleotide excision repair. Prog. Nucleic Acid Res. Mol. Biol. 79 (2005) 183-235
44. Rogakou E.P., Boon C., Redon C., and Bonner W.M. Megabase chromatin domains involved in DNA double-strand breaks in vivo. J. Cell Biol. 146 (1999) 905-916
45. Rubbi C.P., and Milner J. p53 is a chromatin accessibility factor for nucleotide excision repair of DNA damage. EMBO J. 22 (2003) 975-986
46. Schwabish M.A., and Struhl K. Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. Mol. Cell 22 (2006) 415-422
47. Schwartz B.E., and Ahmad K. Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes Dev. 19 (2005) 804-814
48. Shibahara K., and Stillman B. Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatin. Cell 96 (1999) 575-585
49. Smerdon M.J. DNA repair and the role of chromatin structure. Curr. Opin. Cell Biol. 3 (1991) 422-428
50. Smith S., and Stillman B. Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell 58 (1989) 15-25
51. Sobel R.E., Cook R.G., Perry C.A., Annunziato A.T., and Allis C.D. Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4. Proc. Natl. Acad. Sci. USA 92 (1995) 1237-1241
52. Stillman B. Chromatin assembly during SV40 DNA replication in vitro. Cell 45 (1986) 555-565
53. Taddei A., Roche D., Sibarita J.B., Turner B.M., and Almouzni G. Duplication and maintenance of heterochromatin domains. J. Cell Biol. 147 (1999) 1153-1166
54. Tagami H., Ray-Gallet D., Almouzni G., and Nakatani Y. Histone h3.1 and h3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell 116 (2004) 51-61
55. Thiriet C., and Albert P. Rapid and effective western blotting of histones from acid-urea-Triton and sodium dodecyl sulfate polyacrylamide gels: two different approaches depending on the subsequent qualitative or quantitative analysis. Electrophoresis 16 (1995) 357-361
56. Thoma F. Light and dark in chromatin repair: repair of UV-induced DNA lesions by photolyase and nucleotide excision repair. EMBO J. 18 (1999) 6585-6598
57. Tsukuda T., Fleming A.B., Nickoloff J.A., and Osley M.A. Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae. Nature 438 (2005) 379-383
58. Turner B.M. Cellular memory and the histone code. Cell 111 (2002) 285-291
59. van Attikum H., and Gasser S.M. The histone code at DNA breaks: a guide to repair?. Nat. Rev. Mol. Cell Biol. 6 (2005) 757-765
60. Vaquero A., Loyola A., and Reinberg D. The constantly changing face of chromatin. Sci. Aging Knowledge Environ. 14 (2003) RE4
61. Verreault A., Kaufman P.D., Kobayashi R., and Stillman B. Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4. Cell 87 (1996) 95-104
62. Wu R.S., Tsai S., and Bonner W.M. Patterns of histone variant synthesis can distinguish G0 from G1 cells. Cell 31 (1982) 367-374
63. Ye X., Franco A.A., Santos H., Nelson D.M., Kaufman P.D., and Adams P.D. Defective S phase chromatin assembly causes DNA damage, activation of the S phase checkpoint, and S phase arrest. Mol. Cell 11 (2003) 341-351
64. Zweidler A. Resolution of histones by polyacrylamide gel electrophoresis in presence of nonionic detergents. Methods Cell Biol. 17 (1978) 223-233